RNA–Protein interactions for RNA: ENST00000315285.7

SPAST-201, Transcript of spastin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene SPAST, Length 5,117 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPAST-201ENST00000315285 IRX6P78412 446 aaPredicted RBP18.55■□□□□ 0.56
SPAST-201ENST00000315285 SLC24A1O60721 1099 aa18.54■□□□□ 0.56
SPAST-201ENST00000315285 CHMP7Q8WUX9 453 aaPredicted RBP18.51■□□□□ 0.55
SPAST-201ENST00000315285 SOGA1O94964 1423 aa18.51■□□□□ 0.55
SPAST-201ENST00000315285 WDR43Q15061 677 aaKnown RBP eCLIP18.47■□□□□ 0.55
SPAST-201ENST00000315285 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.45■□□□□ 0.54
SPAST-201ENST00000315285 UPF2Q9HAU5 1272 aaKnown RBP18.44■□□□□ 0.54
SPAST-201ENST00000315285 SIN3AQ96ST3 1273 aa18.43■□□□□ 0.54
SPAST-201ENST00000315285 NPM1P06748 294 aaKnown RBP eCLIP18.42■□□□□ 0.54
SPAST-201ENST00000315285 STAG3Q9UJ98 1225 aa18.42■□□□□ 0.54
SPAST-201ENST00000315285 MROH2BQ7Z745 1585 aa18.42■□□□□ 0.54
SPAST-201ENST00000315285 CCNB3Q8WWL7 1395 aa18.41■□□□□ 0.54
SPAST-201ENST00000315285 NBR1Q14596 966 aa18.39■□□□□ 0.53
SPAST-201ENST00000315285 ESF1Q9H501 851 aaKnown RBP18.39■□□□□ 0.53
SPAST-201ENST00000315285 PLEKHD1A6NEE1 506 aa18.38■□□□□ 0.53
SPAST-201ENST00000315285 HSP90AA1P07900 732 aaKnown RBP18.36■□□□□ 0.53
SPAST-201ENST00000315285 VPS8Q8N3P4 1428 aa18.35■□□□□ 0.53
SPAST-201ENST00000315285 CCDC88BA6NC98 1476 aa18.35■□□□□ 0.53
SPAST-201ENST00000315285 CFDP1Q9UEE9 299 aaPredicted RBP18.35■□□□□ 0.53
SPAST-201ENST00000315285 ABCC8Q09428 1581 aa18.34■□□□□ 0.53
SPAST-201ENST00000315285 SUPT16HQ9Y5B9 1047 aaKnown RBP18.34■□□□□ 0.53
SPAST-201ENST00000315285 FHAD1B1AJZ9 1412 aa18.33■□□□□ 0.53
SPAST-201ENST00000315285 RGL3Q3MIN7 710 aa18.31■□□□□ 0.52
SPAST-201ENST00000315285 CARMIL1Q5VZK9 1371 aa18.3■□□□□ 0.52
SPAST-201ENST00000315285 CUX2O14529 1486 aa18.28■□□□□ 0.52
SPAST-201ENST00000315285 KCNH8Q96L42 1107 aa18.27■□□□□ 0.52
SPAST-201ENST00000315285 CARD11Q9BXL7 1154 aa18.27■□□□□ 0.51
SPAST-201ENST00000315285 TIMELESSQ9UNS1 1208 aa18.26■□□□□ 0.51
SPAST-201ENST00000315285 ANP32BQ92688 251 aaKnown RBP18.26■□□□□ 0.51
SPAST-201ENST00000315285 SENP3-EIF4A1A0A087X0R7 540 aa18.26■□□□□ 0.51
SPAST-201ENST00000315285 KANK4Q5T7N3 995 aaPredicted RBP18.23■□□□□ 0.51
SPAST-201ENST00000315285 EIF5BO60841 1220 aaKnown RBP18.21■□□□□ 0.51
SPAST-201ENST00000315285 SETD5Q9C0A6 1442 aa18.21■□□□□ 0.51
SPAST-201ENST00000315285 ANP32EQ9BTT0 268 aa18.19■□□□□ 0.5
SPAST-201ENST00000315285 PPP4R2Q9NY27 417 aa18.18■□□□□ 0.5
SPAST-201ENST00000315285 KNSTRNQ9Y448 316 aa18.18■□□□□ 0.5
SPAST-201ENST00000315285 CDCA8Q53HL2 280 aa18.17■□□□□ 0.5
SPAST-201ENST00000315285 WIZO95785 1651 aa18.16■□□□□ 0.5
SPAST-201ENST00000315285 CCER2I3L3R5 266 aa18.14■□□□□ 0.5
SPAST-201ENST00000315285 DDRGK1Q96HY6 314 aa18.14■□□□□ 0.49
SPAST-201ENST00000315285 PLPPR3Q6T4P5 718 aa18.14■□□□□ 0.49
SPAST-201ENST00000315285 TOP2AP11388 1531 aaKnown RBP18.13■□□□□ 0.49
SPAST-201ENST00000315285 ARHGAP35Q9NRY4 1499 aa18.13■□□□□ 0.49
SPAST-201ENST00000315285 ARXQ96QS3 562 aa18.1■□□□□ 0.49
SPAST-201ENST00000315285 RAB3GAP2Q9H2M9 1393 aa18.1■□□□□ 0.49
SPAST-201ENST00000315285 SMARCA2P51531 1590 aa18.1■□□□□ 0.49
SPAST-201ENST00000315285 EIF4G1Q04637 1599 aaKnown RBP18.09■□□□□ 0.49
SPAST-201ENST00000315285 MYH16Q9H6N6 1097 aa18.09■□□□□ 0.49
SPAST-201ENST00000315285 SENP3Q9H4L4 574 aaPredicted RBP18.08■□□□□ 0.49
SPAST-201ENST00000315285 CFAP53Q96M91 514 aa18.08■□□□□ 0.48
SPAST-201ENST00000315285 BECN1Q14457 450 aa18.07■□□□□ 0.48
SPAST-201ENST00000315285 HSPA5P11021 654 aaKnown RBP18.06■□□□□ 0.48
SPAST-201ENST00000315285 B4GALNT3Q6L9W6 998 aa18.05■□□□□ 0.48
SPAST-201ENST00000315285 DCAF11Q8TEB1 546 aa18.04■□□□□ 0.48
SPAST-201ENST00000315285 CC2D1BQ5T0F9 858 aaKnown RBP18.02■□□□□ 0.48
SPAST-201ENST00000315285 PPP1R15AO75807 674 aaPredicted RBP18.01■□□□□ 0.47
SPAST-201ENST00000315285 NEUROD2Q15784 382 aa18■□□□□ 0.47
SPAST-201ENST00000315285 FMN1Q68DA7 1419 aa17.99■□□□□ 0.47
SPAST-201ENST00000315285 RAPGEF2Q9Y4G8 1499 aa17.98■□□□□ 0.47
SPAST-201ENST00000315285 ERCC6Q03468 1493 aa17.97■□□□□ 0.47
SPAST-201ENST00000315285 FOXD1Q16676 465 aa17.97■□□□□ 0.47
SPAST-201ENST00000315285 TMF1P82094 1093 aa17.97■□□□□ 0.47
SPAST-201ENST00000315285 PPM1GO15355 546 aaPredicted RBP17.97■□□□□ 0.47
SPAST-201ENST00000315285 NOP58Q9Y2X3 529 aaKnown RBP17.96■□□□□ 0.47
SPAST-201ENST00000315285 FTSJ3Q8IY81 847 aaKnown RBP17.95■□□□□ 0.46
SPAST-201ENST00000315285 PKD2Q13563 968 aa17.95■□□□□ 0.46
SPAST-201ENST00000315285 RGS3P49796 1198 aa17.94■□□□□ 0.46
SPAST-201ENST00000315285 MPHOSPH9Q99550 1183 aa17.94■□□□□ 0.46
SPAST-201ENST00000315285 TDRD9Q8NDG6 1382 aaKnown RBP17.92■□□□□ 0.46
SPAST-201ENST00000315285 RUSC2Q8N2Y8 1516 aa17.92■□□□□ 0.46
SPAST-201ENST00000315285 RBM19Q9Y4C8 960 aaKnown RBP17.92■□□□□ 0.46
SPAST-201ENST00000315285 MAPK8IP3Q9UPT6 1336 aa17.91■□□□□ 0.46
SPAST-201ENST00000315285 FRAT1Q92837 279 aaPredicted RBP17.91■□□□□ 0.46
SPAST-201ENST00000315285 LAS1LQ9Y4W2 734 aaKnown RBP17.91■□□□□ 0.46
SPAST-201ENST00000315285 NUDCQ9Y266 331 aa17.91■□□□□ 0.46
SPAST-201ENST00000315285 TNNT2P45379 298 aaPredicted RBP17.9■□□□□ 0.46
SPAST-201ENST00000315285 DHX57Q6P158 1386 aaKnown RBP17.88■□□□□ 0.45
SPAST-201ENST00000315285 FHOD3Q2V2M9 1422 aa17.87■□□□□ 0.45
SPAST-201ENST00000315285 SMARCA4P51532 1647 aa17.87■□□□□ 0.45
SPAST-201ENST00000315285 ERICH6BQ5W0A0 696 aa17.87■□□□□ 0.45
SPAST-201ENST00000315285 GOLGA6L22H0YM25 854 aa17.86■□□□□ 0.45
SPAST-201ENST00000315285 GLIPR1L2Q4G1C9 344 aa17.86■□□□□ 0.45
SPAST-201ENST00000315285 ATAD2BQ9ULI0 1458 aa17.85■□□□□ 0.45
SPAST-201ENST00000315285 POGKQ9P215 609 aa17.85■□□□□ 0.45
SPAST-201ENST00000315285 C14orf37Q86TY3 774 aa17.85■□□□□ 0.45
SPAST-201ENST00000315285 PDS5BQ9NTI5 1447 aa17.85■□□□□ 0.45
SPAST-201ENST00000315285 KTN1Q86UP2 1357 aaKnown RBP17.83■□□□□ 0.45
SPAST-201ENST00000315285 CADPSQ9ULU8 1353 aa17.83■□□□□ 0.45
SPAST-201ENST00000315285 L3MBTL2Q969R5 705 aa17.83■□□□□ 0.44
SPAST-201ENST00000315285 KANK1Q14678 1352 aa17.83■□□□□ 0.44
SPAST-201ENST00000315285 NUP155O75694 1391 aa17.82■□□□□ 0.44
SPAST-201ENST00000315285 ZBTB7CA1YPR0 619 aa17.82■□□□□ 0.44
SPAST-201ENST00000315285 TRIM44Q96DX7 344 aaPredicted RBP17.82■□□□□ 0.44
SPAST-201ENST00000315285 CARMIL2Q6F5E8 1435 aa17.82■□□□□ 0.44
SPAST-201ENST00000315285 U2SURPO15042 1029 aaKnown RBP17.81■□□□□ 0.44
SPAST-201ENST00000315285 MS4A1P11836 297 aa17.8■□□□□ 0.44
SPAST-201ENST00000315285 ANKRD30AQ9BXX3 1397 aa17.8■□□□□ 0.44
SPAST-201ENST00000315285 PLEKHG5O94827 1062 aa17.79■□□□□ 0.44
SPAST-201ENST00000315285 TSHZ2Q9NRE2 1034 aa17.79■□□□□ 0.44
SPAST-201ENST00000315285 RALBP1Q15311 655 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms