RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 TONSLQ96HA7 1378 aa16.94■□□□□ 0.3
USP38-201ENST00000307017 SPRYD3Q8NCJ5 442 aa16.93■□□□□ 0.3
USP38-201ENST00000307017 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.92■□□□□ 0.3
USP38-201ENST00000307017 PLCB2Q00722 1185 aa16.9■□□□□ 0.3
USP38-201ENST00000307017 DNTTIP2Q5QJE6 756 aaKnown RBP16.89■□□□□ 0.29
USP38-201ENST00000307017 WDR43Q15061 677 aaKnown RBP eCLIP16.89■□□□□ 0.29
USP38-201ENST00000307017 TRIM44Q96DX7 344 aaPredicted RBP16.88■□□□□ 0.29
USP38-201ENST00000307017 C14orf37Q86TY3 774 aa16.88■□□□□ 0.29
USP38-201ENST00000307017 SUPT16HQ9Y5B9 1047 aaKnown RBP16.86■□□□□ 0.29
USP38-201ENST00000307017 PTMAP06454 111 aaKnown RBP16.83■□□□□ 0.29
USP38-201ENST00000307017 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.82■□□□□ 0.28
USP38-201ENST00000307017 ABCC9O60706 1549 aa16.82■□□□□ 0.28
USP38-201ENST00000307017 NEUROD2Q15784 382 aa16.81■□□□□ 0.28
USP38-201ENST00000307017 PPM1GO15355 546 aaPredicted RBP16.8■□□□□ 0.28
USP38-201ENST00000307017 ANP32EQ9BTT0 268 aa16.78■□□□□ 0.28
USP38-201ENST00000307017 CDK11BP21127 795 aaKnown RBP16.78■□□□□ 0.28
USP38-201ENST00000307017 RGS3P49796 1198 aa16.78■□□□□ 0.28
USP38-201ENST00000307017 ESF1Q9H501 851 aaKnown RBP16.77■□□□□ 0.27
USP38-201ENST00000307017 TNNT2P45379 298 aaPredicted RBP16.76■□□□□ 0.27
USP38-201ENST00000307017 RRP7BPQ9NSQ0 103 aa16.72■□□□□ 0.27
USP38-201ENST00000307017 RGL3Q3MIN7 710 aa16.72■□□□□ 0.27
USP38-201ENST00000307017 B4GALNT3Q6L9W6 998 aa16.72■□□□□ 0.27
USP38-201ENST00000307017 MYH16Q9H6N6 1097 aa16.7■□□□□ 0.26
USP38-201ENST00000307017 NAP1L2Q9ULW6 460 aaPredicted RBP16.67■□□□□ 0.26
USP38-201ENST00000307017 ERICH6BQ5W0A0 696 aa16.67■□□□□ 0.26
USP38-201ENST00000307017 ANO8Q9HCE9 1232 aaPredicted RBP16.66■□□□□ 0.26
USP38-201ENST00000307017 FRAT1Q92837 279 aaPredicted RBP16.65■□□□□ 0.26
USP38-201ENST00000307017 CSRNP3Q8WYN3 585 aa16.65■□□□□ 0.26
USP38-201ENST00000307017 BECN1Q14457 450 aa16.62■□□□□ 0.25
USP38-201ENST00000307017 DEKP35659 375 aaKnown RBP16.61■□□□□ 0.25
USP38-201ENST00000307017 CC2D1BQ5T0F9 858 aaKnown RBP16.61■□□□□ 0.25
USP38-201ENST00000307017 DDRGK1Q96HY6 314 aa16.59■□□□□ 0.25
USP38-201ENST00000307017 GZF1Q9H116 711 aaPredicted RBP16.59■□□□□ 0.25
USP38-201ENST00000307017 NOP58Q9Y2X3 529 aaKnown RBP16.58■□□□□ 0.24
USP38-201ENST00000307017 SOX12O15370 315 aa16.57■□□□□ 0.24
USP38-201ENST00000307017 FTSJ3Q8IY81 847 aaKnown RBP16.56■□□□□ 0.24
USP38-201ENST00000307017 ZRSR1Q15695 479 aaKnown RBP16.54■□□□□ 0.24
USP38-201ENST00000307017 HSP90AB1P08238 724 aaKnown RBP16.54■□□□□ 0.24
USP38-201ENST00000307017 MYO15BQ96JP2 1530 aa16.54■□□□□ 0.24
USP38-201ENST00000307017 PDE4CQ08493 712 aa16.53■□□□□ 0.24
USP38-201ENST00000307017 APBB1O00213 710 aa16.53■□□□□ 0.24
USP38-201ENST00000307017 GOLGA6L22H0YM25 854 aa16.53■□□□□ 0.24
USP38-201ENST00000307017 KCNH8Q96L42 1107 aa16.52■□□□□ 0.24
USP38-201ENST00000307017 CLSTN1O94985 981 aa16.52■□□□□ 0.23
USP38-201ENST00000307017 LMOD2Q6P5Q4 547 aa16.51■□□□□ 0.23
USP38-201ENST00000307017 SIN3AQ96ST3 1273 aa16.5■□□□□ 0.23
USP38-201ENST00000307017 PRM3Q9NNZ6 103 aa16.47■□□□□ 0.23
USP38-201ENST00000307017 EIF4G2P78344 907 aaKnown RBP eCLIP16.45■□□□□ 0.22
USP38-201ENST00000307017 DRC7Q8IY82 874 aa16.45■□□□□ 0.22
USP38-201ENST00000307017 FOXD4L1Q9NU39 408 aa16.45■□□□□ 0.22
USP38-201ENST00000307017 HAP1P54257 671 aaPredicted RBP16.44■□□□□ 0.22
USP38-201ENST00000307017 SCRIBQ14160 1630 aa16.42■□□□□ 0.22
USP38-201ENST00000307017 OS9Q13438 667 aaPredicted RBP16.42■□□□□ 0.22
USP38-201ENST00000307017 PPP1R15AO75807 674 aaPredicted RBP16.41■□□□□ 0.22
USP38-201ENST00000307017 U2SURPO15042 1029 aaKnown RBP16.4■□□□□ 0.22
USP38-201ENST00000307017 CASC1Q6TDU7 716 aa16.4■□□□□ 0.22
USP38-201ENST00000307017 FGD1P98174 961 aa16.4■□□□□ 0.22
USP38-201ENST00000307017 NPHP1O15259 732 aa16.39■□□□□ 0.22
USP38-201ENST00000307017 SAFB2Q14151 953 aaKnown RBP eCLIP16.39■□□□□ 0.21
USP38-201ENST00000307017 SLKQ9H2G2 1235 aaPredicted RBP16.39■□□□□ 0.21
USP38-201ENST00000307017 KCNJ4P48050 445 aa16.38■□□□□ 0.21
USP38-201ENST00000307017 RBM19Q9Y4C8 960 aaKnown RBP16.37■□□□□ 0.21
USP38-201ENST00000307017 ISY1Q9ULR0 285 aaKnown RBP16.37■□□□□ 0.21
USP38-201ENST00000307017 FOXD4L5Q5VV16 416 aaPredicted RBP16.36■□□□□ 0.21
USP38-201ENST00000307017 FOXD4L4Q8WXT5 416 aaPredicted RBP16.36■□□□□ 0.21
USP38-201ENST00000307017 NOL8Q76FK4 1167 aaKnown RBP16.35■□□□□ 0.21
USP38-201ENST00000307017 MSNP26038 577 aaKnown RBP16.35■□□□□ 0.21
USP38-201ENST00000307017 BCL11BQ9C0K0 894 aaPredicted RBP16.35■□□□□ 0.21
USP38-201ENST00000307017 KNSTRNQ9Y448 316 aa16.33■□□□□ 0.2
USP38-201ENST00000307017 CARD11Q9BXL7 1154 aa16.32■□□□□ 0.2
USP38-201ENST00000307017 MTUS2Q5JR59 1369 aa16.31■□□□□ 0.2
USP38-201ENST00000307017 PPP4R2Q9NY27 417 aa16.31■□□□□ 0.2
USP38-201ENST00000307017 FBXO3Q9UK99 471 aa16.31■□□□□ 0.2
USP38-201ENST00000307017 TSPY4P0CV99 314 aa16.3■□□□□ 0.2
USP38-201ENST00000307017 TSPY10P0CW01 314 aa16.3■□□□□ 0.2
USP38-201ENST00000307017 DCAF1Q9Y4B6 1507 aa16.3■□□□□ 0.2
USP38-201ENST00000307017 NPM1P06748 294 aaKnown RBP eCLIP16.29■□□□□ 0.2
USP38-201ENST00000307017 KRI1Q8N9T8 703 aaKnown RBP16.29■□□□□ 0.2
USP38-201ENST00000307017 FOXD1Q16676 465 aa16.27■□□□□ 0.2
USP38-201ENST00000307017 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.27■□□□□ 0.19
USP38-201ENST00000307017 HSCBQ8IWL3 235 aa16.27■□□□□ 0.19
USP38-201ENST00000307017 CREBRFQ8IUR6 639 aa16.26■□□□□ 0.19
USP38-201ENST00000307017 SLC4A3P48751 1232 aa16.26■□□□□ 0.19
USP38-201ENST00000307017 MAPK8IP3Q9UPT6 1336 aa16.26■□□□□ 0.19
USP38-201ENST00000307017 FOXD4L6Q3SYB3 417 aaPredicted RBP16.25■□□□□ 0.19
USP38-201ENST00000307017 FOXD4L3Q6VB84 417 aaPredicted RBP16.25■□□□□ 0.19
USP38-201ENST00000307017 GOLGA6L4A6NEF3 574 aa16.25■□□□□ 0.19
USP38-201ENST00000307017 ZNF330Q9Y3S2 320 aaPredicted RBP16.24■□□□□ 0.19
USP38-201ENST00000307017 TIMELESSQ9UNS1 1208 aa16.23■□□□□ 0.19
USP38-201ENST00000307017 BAZ1BQ9UIG0 1483 aaKnown RBP16.23■□□□□ 0.19
USP38-201ENST00000307017 GOLGA2Q08379 1002 aa16.21■□□□□ 0.18
USP38-201ENST00000307017 CFAP53Q96M91 514 aa16.2■□□□□ 0.18
USP38-201ENST00000307017 CCDC9Q9Y3X0 531 aaKnown RBP16.2■□□□□ 0.18
USP38-201ENST00000307017 CHAF1AQ13111 956 aaPredicted RBP16.2■□□□□ 0.18
USP38-201ENST00000307017 GOLGA6L6A8MZA4 724 aa16.19■□□□□ 0.18
USP38-201ENST00000307017 HSP90B1P14625 803 aaKnown RBP16.19■□□□□ 0.18
USP38-201ENST00000307017 ZCCHC6Q5VYS8 1495 aaKnown RBP16.19■□□□□ 0.18
USP38-201ENST00000307017 MFAP1P55081 439 aaKnown RBP16.18■□□□□ 0.18
USP38-201ENST00000307017 MLECQ14165 292 aa16.17■□□□□ 0.18
USP38-201ENST00000307017 POGKQ9P215 609 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms