RNA–Protein interactions for RNA: ENST00000283254.11

SCN3A-201, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SCN3A, Length 9,091 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-201ENST00000283254 HNRNPUQ00839 825 aaKnown RBP eCLIP5.34□□□□□ -1.55
SCN3A-201ENST00000283254 NRDCO43847 1150 aa5.34□□□□□ -1.55
SCN3A-201ENST00000283254 PLEKHD1A6NEE1 506 aa5.34□□□□□ -1.55
SCN3A-201ENST00000283254 ARID4BQ4LE39 1312 aaPredicted RBP5.34□□□□□ -1.55
SCN3A-201ENST00000283254 EEA1Q15075 1411 aa5.34□□□□□ -1.55
SCN3A-201ENST00000283254 NPHP1O15259 732 aa5.34□□□□□ -1.56
SCN3A-201ENST00000283254 GTF3C3Q9Y5Q9 886 aa5.33□□□□□ -1.56
SCN3A-201ENST00000283254 MYO15BQ96JP2 1530 aa5.33□□□□□ -1.56
SCN3A-201ENST00000283254 MRS2Q9HD23 443 aa5.32□□□□□ -1.56
SCN3A-201ENST00000283254 GOLGA6L6A8MZA4 724 aa5.32□□□□□ -1.56
SCN3A-201ENST00000283254 HDGFP51858 240 aaKnown RBP5.32□□□□□ -1.56
SCN3A-201ENST00000283254 MS4A1P11836 297 aa5.31□□□□□ -1.56
SCN3A-201ENST00000283254 NUDCQ9Y266 331 aa5.31□□□□□ -1.56
SCN3A-201ENST00000283254 CLIP1P30622 1438 aa5.31□□□□□ -1.56
SCN3A-201ENST00000283254 CHMP4AQ9BY43 222 aa5.31□□□□□ -1.56
SCN3A-201ENST00000283254 KNSTRNQ9Y448 316 aa5.31□□□□□ -1.56
SCN3A-201ENST00000283254 MAPK8IP3Q9UPT6 1336 aa5.31□□□□□ -1.56
SCN3A-201ENST00000283254 DDRGK1Q96HY6 314 aa5.3□□□□□ -1.56
SCN3A-201ENST00000283254 L1TD1Q5T7N2 865 aaKnown RBP5.3□□□□□ -1.56
SCN3A-201ENST00000283254 KANK1Q14678 1352 aa5.3□□□□□ -1.56
SCN3A-201ENST00000283254 FAM9BQ8IZU0 186 aa5.3□□□□□ -1.56
SCN3A-201ENST00000283254 RB1CC1Q8TDY2 1594 aa5.29□□□□□ -1.56
SCN3A-201ENST00000283254 GOLGA2Q08379 1002 aa5.29□□□□□ -1.56
SCN3A-201ENST00000283254 ZBTB7CA1YPR0 619 aa5.29□□□□□ -1.56
SCN3A-201ENST00000283254 PNNQ9H307 717 aaKnown RBP5.29□□□□□ -1.56
SCN3A-201ENST00000283254 DCAF1Q9Y4B6 1507 aa5.29□□□□□ -1.56
SCN3A-201ENST00000283254 FTSJ3Q8IY81 847 aaKnown RBP5.29□□□□□ -1.56
SCN3A-201ENST00000283254 TNNT2P45379 298 aaPredicted RBP5.28□□□□□ -1.56
SCN3A-201ENST00000283254 CHIC2Q9UKJ5 165 aa5.28□□□□□ -1.56
SCN3A-201ENST00000283254 CFAP44Q96MT7 982 aa5.28□□□□□ -1.56
SCN3A-201ENST00000283254 ERCC6Q03468 1493 aa5.28□□□□□ -1.56
SCN3A-201ENST00000283254 TRIM44Q96DX7 344 aaPredicted RBP5.28□□□□□ -1.56
SCN3A-201ENST00000283254 CFDP1Q9UEE9 299 aaPredicted RBP5.27□□□□□ -1.57
SCN3A-201ENST00000283254 POGKQ9P215 609 aa5.27□□□□□ -1.57
SCN3A-201ENST00000283254 FGD1P98174 961 aa5.27□□□□□ -1.57
SCN3A-201ENST00000283254 ARXQ96QS3 562 aa5.27□□□□□ -1.57
SCN3A-201ENST00000283254 PTMAP06454 111 aaKnown RBP5.26□□□□□ -1.57
SCN3A-201ENST00000283254 KDM2AQ9Y2K7 1162 aa5.26□□□□□ -1.57
SCN3A-201ENST00000283254 FKBP8Q14318 412 aa5.26□□□□□ -1.57
SCN3A-201ENST00000283254 KIF27Q86VH2 1401 aa5.26□□□□□ -1.57
SCN3A-201ENST00000283254 CHAF1AQ13111 956 aaPredicted RBP5.26□□□□□ -1.57
SCN3A-201ENST00000283254 LMOD2Q6P5Q4 547 aa5.25□□□□□ -1.57
SCN3A-201ENST00000283254 TMX4Q9H1E5 349 aaPredicted RBP5.25□□□□□ -1.57
SCN3A-201ENST00000283254 OS9Q13438 667 aaPredicted RBP5.25□□□□□ -1.57
SCN3A-201ENST00000283254 KCNH8Q96L42 1107 aa5.25□□□□□ -1.57
SCN3A-201ENST00000283254 HDAC5Q9UQL6 1122 aa5.25□□□□□ -1.57
SCN3A-201ENST00000283254 DDX10Q13206 875 aaKnown RBP5.24□□□□□ -1.57
SCN3A-201ENST00000283254 GOLGA3Q08378 1498 aa5.24□□□□□ -1.57
SCN3A-201ENST00000283254 CCDC34Q96HJ3 373 aa5.24□□□□□ -1.57
SCN3A-201ENST00000283254 KCNJ4P48050 445 aa5.24□□□□□ -1.57
SCN3A-201ENST00000283254 BAZ1BQ9UIG0 1483 aaKnown RBP5.24□□□□□ -1.57
SCN3A-201ENST00000283254 FHAD1B1AJZ9 1412 aa5.23□□□□□ -1.57
SCN3A-201ENST00000283254 ZCCHC6Q5VYS8 1495 aaKnown RBP5.23□□□□□ -1.57
SCN3A-201ENST00000283254 CCNB3Q8WWL7 1395 aa5.23□□□□□ -1.57
SCN3A-201ENST00000283254 GOLGA6L4A6NEF3 574 aa5.23□□□□□ -1.57
SCN3A-201ENST00000283254 MCCP23508 829 aa5.22□□□□□ -1.57
SCN3A-201ENST00000283254 CLSTN1O94985 981 aa5.22□□□□□ -1.57
SCN3A-201ENST00000283254 CALD1Q05682 793 aaKnown RBP5.22□□□□□ -1.57
SCN3A-201ENST00000283254 PPM1GO15355 546 aaPredicted RBP5.22□□□□□ -1.57
SCN3A-201ENST00000283254 ERICH6BQ5W0A0 696 aa5.22□□□□□ -1.57
SCN3A-201ENST00000283254 SALL2Q9Y467 1007 aaPredicted RBP5.22□□□□□ -1.57
SCN3A-201ENST00000283254 CARD11Q9BXL7 1154 aa5.21□□□□□ -1.58
SCN3A-201ENST00000283254 EIF3AQ14152 1382 aaKnown RBP5.21□□□□□ -1.58
SCN3A-201ENST00000283254 KIAA2012Q0VF49 1180 aa5.21□□□□□ -1.58
SCN3A-201ENST00000283254 CEP164Q9UPV0 1460 aa5.2□□□□□ -1.58
SCN3A-201ENST00000283254 HTATSF1O43719 755 aaKnown RBP5.2□□□□□ -1.58
SCN3A-201ENST00000283254 PLEKHG5O94827 1062 aa5.2□□□□□ -1.58
SCN3A-201ENST00000283254 RRP7BPQ9NSQ0 103 aa5.2□□□□□ -1.58
SCN3A-201ENST00000283254 WRNQ14191 1432 aaPredicted RBP eCLIP5.2□□□□□ -1.58
SCN3A-201ENST00000283254 NACADO15069 1562 aa5.2□□□□□ -1.58
SCN3A-201ENST00000283254 GNL2Q13823 731 aaKnown RBP5.19□□□□□ -1.58
SCN3A-201ENST00000283254 DNTTIP2Q5QJE6 756 aaKnown RBP5.19□□□□□ -1.58
SCN3A-201ENST00000283254 ANO8Q9HCE9 1232 aaPredicted RBP5.19□□□□□ -1.58
SCN3A-201ENST00000283254 CARMIL2Q6F5E8 1435 aa5.19□□□□□ -1.58
SCN3A-201ENST00000283254 CEP162Q5TB80 1403 aa5.19□□□□□ -1.58
SCN3A-201ENST00000283254 ISY1Q9ULR0 285 aaKnown RBP5.18□□□□□ -1.58
SCN3A-201ENST00000283254 IPO8O15397 1037 aaKnown RBP5.18□□□□□ -1.58
SCN3A-201ENST00000283254 TRHP20396 242 aaPredicted RBP5.18□□□□□ -1.58
SCN3A-201ENST00000283254 RGL3Q3MIN7 710 aa5.18□□□□□ -1.58
SCN3A-201ENST00000283254 TULP1O00294 542 aaPredicted RBP5.18□□□□□ -1.58
SCN3A-201ENST00000283254 RTF1Q92541 710 aaKnown RBP5.18□□□□□ -1.58
SCN3A-201ENST00000283254 TMF1P82094 1093 aa5.18□□□□□ -1.58
SCN3A-201ENST00000283254 KIAA1211Q6ZU35 1233 aa5.17□□□□□ -1.58
SCN3A-201ENST00000283254 USP35Q9P2H5 1018 aa5.17□□□□□ -1.58
SCN3A-201ENST00000283254 HDGFL2Q7Z4V5 671 aaPredicted RBP5.17□□□□□ -1.58
SCN3A-201ENST00000283254 PTMSP20962 102 aa5.17□□□□□ -1.58
SCN3A-201ENST00000283254 TIMELESSQ9UNS1 1208 aa5.17□□□□□ -1.58
SCN3A-201ENST00000283254 SPAG9O60271 1321 aaKnown RBP5.17□□□□□ -1.58
SCN3A-201ENST00000283254 HSCBQ8IWL3 235 aa5.16□□□□□ -1.58
SCN3A-201ENST00000283254 GPATCH3Q96I76 525 aa5.16□□□□□ -1.58
SCN3A-201ENST00000283254 NAP1L2Q9ULW6 460 aaPredicted RBP5.16□□□□□ -1.58
SCN3A-201ENST00000283254 CHMP4CQ96CF2 233 aa5.16□□□□□ -1.58
SCN3A-201ENST00000283254 U2SURPO15042 1029 aaKnown RBP5.16□□□□□ -1.58
SCN3A-201ENST00000283254 KIF3AQ9Y496 699 aa5.16□□□□□ -1.58
SCN3A-201ENST00000283254 NBR1Q14596 966 aa5.15□□□□□ -1.58
SCN3A-201ENST00000283254 SRPK2P78362 688 aaKnown RBP5.15□□□□□ -1.58
SCN3A-201ENST00000283254 CSB-PGBD3P0DP91 1061 aa5.15□□□□□ -1.58
SCN3A-201ENST00000283254 LAS1LQ9Y4W2 734 aaKnown RBP5.15□□□□□ -1.58
SCN3A-201ENST00000283254 STK31Q9BXU1 1019 aa5.15□□□□□ -1.59
SCN3A-201ENST00000283254 HMMRO75330 724 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms