RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 MTUS2Q5JR59 1369 aa10.48□□□□□ -0.73
LIMD1-201ENST00000273317 GOLGA3Q08378 1498 aa10.48□□□□□ -0.73
LIMD1-201ENST00000273317 ARID4BQ4LE39 1312 aaPredicted RBP10.46□□□□□ -0.73
LIMD1-201ENST00000273317 ERICH6BQ5W0A0 696 aa10.46□□□□□ -0.74
LIMD1-201ENST00000273317 PPM1GO15355 546 aaPredicted RBP10.45□□□□□ -0.74
LIMD1-201ENST00000273317 ZRSR1Q15695 479 aaKnown RBP10.45□□□□□ -0.74
LIMD1-201ENST00000273317 CHGAP10645 457 aaKnown RBP10.45□□□□□ -0.74
LIMD1-201ENST00000273317 RB1CC1Q8TDY2 1594 aa10.45□□□□□ -0.74
LIMD1-201ENST00000273317 IRX6P78412 446 aaPredicted RBP10.44□□□□□ -0.74
LIMD1-201ENST00000273317 EIF4G2P78344 907 aaKnown RBP eCLIP10.44□□□□□ -0.74
LIMD1-201ENST00000273317 ARID3AQ99856 593 aa10.43□□□□□ -0.74
LIMD1-201ENST00000273317 PTMAP06454 111 aaKnown RBP10.43□□□□□ -0.74
LIMD1-201ENST00000273317 CDCA8Q53HL2 280 aa10.43□□□□□ -0.74
LIMD1-201ENST00000273317 GOLGA6L6A8MZA4 724 aa10.43□□□□□ -0.74
LIMD1-201ENST00000273317 NPM1P06748 294 aaKnown RBP eCLIP10.43□□□□□ -0.74
LIMD1-201ENST00000273317 CHMP4BQ9H444 224 aaKnown RBP10.42□□□□□ -0.74
LIMD1-201ENST00000273317 TULP1O00294 542 aaPredicted RBP10.41□□□□□ -0.74
LIMD1-201ENST00000273317 CFAP53Q96M91 514 aa10.41□□□□□ -0.74
LIMD1-201ENST00000273317 SCAF1Q9H7N4 1312 aaKnown RBP10.41□□□□□ -0.74
LIMD1-201ENST00000273317 TSPY4P0CV99 314 aa10.41□□□□□ -0.74
LIMD1-201ENST00000273317 TSPY10P0CW01 314 aa10.41□□□□□ -0.74
LIMD1-201ENST00000273317 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.4□□□□□ -0.74
LIMD1-201ENST00000273317 NAP1L5Q96NT1 182 aaPredicted RBP10.38□□□□□ -0.75
LIMD1-201ENST00000273317 CEP162Q5TB80 1403 aa10.38□□□□□ -0.75
LIMD1-201ENST00000273317 FTSJ3Q8IY81 847 aaKnown RBP10.37□□□□□ -0.75
LIMD1-201ENST00000273317 MIER1Q8N108 512 aa10.37□□□□□ -0.75
LIMD1-201ENST00000273317 NRDCO43847 1150 aa10.37□□□□□ -0.75
LIMD1-201ENST00000273317 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.37□□□□□ -0.753e-6■■■■□ 20.1
LIMD1-201ENST00000273317 SALL2Q9Y467 1007 aaPredicted RBP10.37□□□□□ -0.75
LIMD1-201ENST00000273317 MS4A1P11836 297 aa10.36□□□□□ -0.75
LIMD1-201ENST00000273317 CEP164Q9UPV0 1460 aa10.36□□□□□ -0.75
LIMD1-201ENST00000273317 SENP3-EIF4A1A0A087X0R7 540 aa10.36□□□□□ -0.75
LIMD1-201ENST00000273317 ZBTB7CA1YPR0 619 aa10.35□□□□□ -0.75
LIMD1-201ENST00000273317 CHIC2Q9UKJ5 165 aa10.34□□□□□ -0.75
LIMD1-201ENST00000273317 DNTTIP2Q5QJE6 756 aaKnown RBP10.34□□□□□ -0.75
LIMD1-201ENST00000273317 KNSTRNQ9Y448 316 aa10.34□□□□□ -0.75
LIMD1-201ENST00000273317 NACADO15069 1562 aa10.33□□□□□ -0.76
LIMD1-201ENST00000273317 CHAF1AQ13111 956 aaPredicted RBP10.33□□□□□ -0.76
LIMD1-201ENST00000273317 PPP4R2Q9NY27 417 aa10.33□□□□□ -0.76
LIMD1-201ENST00000273317 KDM2AQ9Y2K7 1162 aa10.33□□□□□ -0.76
LIMD1-201ENST00000273317 NOP58Q9Y2X3 529 aaKnown RBP10.33□□□□□ -0.76
LIMD1-201ENST00000273317 L1TD1Q5T7N2 865 aaKnown RBP10.32□□□□□ -0.76
LIMD1-201ENST00000273317 CFAP44Q96MT7 982 aa10.31□□□□□ -0.76
LIMD1-201ENST00000273317 PTMSP20962 102 aa10.3□□□□□ -0.76
LIMD1-201ENST00000273317 PPP1R15AO75807 674 aaPredicted RBP10.3□□□□□ -0.76
LIMD1-201ENST00000273317 KIF27Q86VH2 1401 aa10.29□□□□□ -0.76
LIMD1-201ENST00000273317 PNNQ9H307 717 aaKnown RBP10.29□□□□□ -0.76
LIMD1-201ENST00000273317 LAS1LQ9Y4W2 734 aaKnown RBP10.29□□□□□ -0.76
LIMD1-201ENST00000273317 TAOK2Q9UL54 1235 aa10.28□□□□□ -0.76
LIMD1-201ENST00000273317 NCBP3Q53F19 620 aaKnown RBP10.28□□□□□ -0.76
LIMD1-201ENST00000273317 MAPK8IP3Q9UPT6 1336 aa10.27□□□□□ -0.76
LIMD1-201ENST00000273317 FHAD1B1AJZ9 1412 aa10.27□□□□□ -0.77
LIMD1-201ENST00000273317 TNIKQ9UKE5 1360 aa10.27□□□□□ -0.77
LIMD1-201ENST00000273317 HSP90AB1P08238 724 aaKnown RBP10.27□□□□□ -0.77
LIMD1-201ENST00000273317 BAZ1BQ9UIG0 1483 aaKnown RBP10.27□□□□□ -0.77
LIMD1-201ENST00000273317 HSCBQ8IWL3 235 aa10.26□□□□□ -0.77
LIMD1-201ENST00000273317 NUDCQ9Y266 331 aa10.26□□□□□ -0.77
LIMD1-201ENST00000273317 WRNQ14191 1432 aaPredicted RBP eCLIP10.24□□□□□ -0.77
LIMD1-201ENST00000273317 CHMP7Q8WUX9 453 aaPredicted RBP10.24□□□□□ -0.77
LIMD1-201ENST00000273317 RRP7BPQ9NSQ0 103 aa10.24□□□□□ -0.77
LIMD1-201ENST00000273317 MCCP23508 829 aa10.23□□□□□ -0.77
LIMD1-201ENST00000273317 PLPPR3Q6T4P5 718 aa10.23□□□□□ -0.77
LIMD1-201ENST00000273317 SENP3Q9H4L4 574 aaPredicted RBP10.23□□□□□ -0.77
LIMD1-201ENST00000273317 PLEKHD1A6NEE1 506 aa10.22□□□□□ -0.77
LIMD1-201ENST00000273317 MSNP26038 577 aaKnown RBP10.22□□□□□ -0.77
LIMD1-201ENST00000273317 MYO15BQ96JP2 1530 aa10.22□□□□□ -0.77
LIMD1-201ENST00000273317 BAZ1AQ9NRL2 1556 aaPredicted RBP10.21□□□□□ -0.77
LIMD1-201ENST00000273317 C14orf37Q86TY3 774 aa10.21□□□□□ -0.77
LIMD1-201ENST00000273317 KANK1Q14678 1352 aa10.21□□□□□ -0.78
LIMD1-201ENST00000273317 SUPT16HQ9Y5B9 1047 aaKnown RBP10.21□□□□□ -0.78
LIMD1-201ENST00000273317 PLEKHG5O94827 1062 aa10.2□□□□□ -0.78
LIMD1-201ENST00000273317 CARD11Q9BXL7 1154 aa10.2□□□□□ -0.78
LIMD1-201ENST00000273317 GOLGA6L4A6NEF3 574 aa10.2□□□□□ -0.78
LIMD1-201ENST00000273317 FGD1P98174 961 aa10.2□□□□□ -0.78
LIMD1-201ENST00000273317 CCER2I3L3R5 266 aa10.19□□□□□ -0.78
LIMD1-201ENST00000273317 HAP1P54257 671 aaPredicted RBP10.18□□□□□ -0.78
LIMD1-201ENST00000273317 TIMELESSQ9UNS1 1208 aa10.18□□□□□ -0.78
LIMD1-201ENST00000273317 OS9Q13438 667 aaPredicted RBP10.18□□□□□ -0.78
LIMD1-201ENST00000273317 ARHGAP35Q9NRY4 1499 aa10.18□□□□□ -0.78
LIMD1-201ENST00000273317 A0A0G2JS52 829 aa10.18□□□□□ -0.78
LIMD1-201ENST00000273317 KCNJ4P48050 445 aa10.17□□□□□ -0.78
LIMD1-201ENST00000273317 RGS3P49796 1198 aa10.17□□□□□ -0.78
LIMD1-201ENST00000273317 CFDP1Q9UEE9 299 aaPredicted RBP10.17□□□□□ -0.78
LIMD1-201ENST00000273317 CCNB3Q8WWL7 1395 aa10.17□□□□□ -0.78
LIMD1-201ENST00000273317 GBP4Q96PP9 640 aa10.17□□□□□ -0.78
LIMD1-201ENST00000273317 HIRIP3Q9BW71 556 aaPredicted RBP10.15□□□□□ -0.78
LIMD1-201ENST00000273317 SYAP1Q96A49 352 aaPredicted RBP10.15□□□□□ -0.78
LIMD1-201ENST00000273317 KTN1Q86UP2 1357 aaKnown RBP10.15□□□□□ -0.79
LIMD1-201ENST00000273317 KIAA2012Q0VF49 1180 aa10.14□□□□□ -0.79
LIMD1-201ENST00000273317 EIF3AQ14152 1382 aaKnown RBP10.13□□□□□ -0.79
LIMD1-201ENST00000273317 TMF1P82094 1093 aa10.13□□□□□ -0.79
LIMD1-201ENST00000273317 HTATSF1O43719 755 aaKnown RBP10.13□□□□□ -0.79
LIMD1-201ENST00000273317 DRC7Q8IY82 874 aa10.13□□□□□ -0.79
LIMD1-201ENST00000273317 CALD1Q05682 793 aaKnown RBP10.13□□□□□ -0.79
LIMD1-201ENST00000273317 POGKQ9P215 609 aa10.12□□□□□ -0.79
LIMD1-201ENST00000273317 FRAT1Q92837 279 aaPredicted RBP10.12□□□□□ -0.79
LIMD1-201ENST00000273317 USP35Q9P2H5 1018 aa10.12□□□□□ -0.79
LIMD1-201ENST00000273317 PLCB2Q00722 1185 aa10.12□□□□□ -0.79
LIMD1-201ENST00000273317 IPO8O15397 1037 aaKnown RBP10.12□□□□□ -0.79
LIMD1-201ENST00000273317 DEKP35659 375 aaKnown RBP10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms