RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 LINC00315P59091 139 aa3.49□□□□□ -1.85
USP48-202ENST00000374730 SNRPD3P62318 126 aaKnown RBP3.49□□□□□ -1.85
USP48-202ENST00000374730 DEFB113Q30KQ7 82 aa3.49□□□□□ -1.85
USP48-202ENST00000374730 C10orf99Q6UWK7 81 aa3.49□□□□□ -1.85
USP48-202ENST00000374730 FOXI2Q6ZQN5 318 aa3.49□□□□□ -1.85
USP48-202ENST00000374730 ERASQ7Z444 233 aa3.49□□□□□ -1.85
USP48-202ENST00000374730 Q8N2B8 174 aa3.49□□□□□ -1.85
USP48-202ENST00000374730 TEX29Q8N6K0 151 aa3.49□□□□□ -1.85
USP48-202ENST00000374730 C14orf178Q8N769 122 aaPredicted RBP3.49□□□□□ -1.85
USP48-202ENST00000374730 TOMM6Q96B49 74 aa3.49□□□□□ -1.85
USP48-202ENST00000374730 C9orf85Q96MD7 179 aa3.49□□□□□ -1.85
USP48-202ENST00000374730 FOXC2Q99958 501 aa3.49□□□□□ -1.85
USP48-202ENST00000374730 HHLA3Q9XRX5 114 aa3.49□□□□□ -1.85
USP48-202ENST00000374730 NF1P21359 2839 aa3.49□□□□□ -1.85
USP48-202ENST00000374730 DOPEY2Q9Y3R5 2298 aa3.49□□□□□ -1.85
USP48-202ENST00000374730 ZNF469Q96JG9 3925 aaPredicted RBP3.49□□□□□ -1.85
USP48-202ENST00000374730 AGRNO00468 2067 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 IGKV3-7A0A075B6H7 116 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 TRAV26-1A0A087WT03 109 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 IGHV3-16A0A0C4DH30 117 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 TRBV6-5A0A0K0K1A5 114 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 A6NDN8 102 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 A8MTW9 85 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 F8VRH5 84 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 LINC01619G3V211 115 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.48□□□□□ -1.85
USP48-202ENST00000374730 H7C1H1 209 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 CCL24O00175 119 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 GNRH2O43555 120 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 MGPP08493 103 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 ZNF688P0C7X2 276 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 NMUP48645 174 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 SRSF9Q13242 221 aaKnown RBP eCLIP3.48□□□□□ -1.85
USP48-202ENST00000374730 ADAMTSL5Q6ZMM2 481 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 Q6ZVH6 145 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 NOTCH2NLQ7Z3S9 236 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 TRPT1Q86TN4 253 aaKnown RBP3.48□□□□□ -1.85
USP48-202ENST00000374730 PCP2Q8IVA1 136 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 TMEM86BQ8N661 226 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 RPL39LQ96EH5 51 aaKnown RBP3.48□□□□□ -1.85
USP48-202ENST00000374730 MRPL35Q9NZE8 188 aaKnown RBP3.48□□□□□ -1.85
USP48-202ENST00000374730 C2CD3Q4AC94 2353 aa3.48□□□□□ -1.85
USP48-202ENST00000374730 IGHV1OR15-1A0A075B7D0 117 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 IGKV2D-26A0A0A0MRZ7 120 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 TRAV12-3A0A0B4J271 114 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 H3BRM9 83 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 CCL25O15444 150 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 CD7P09564 240 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 CDKN1BP46527 198 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 POLR2KP53803 58 aaKnown RBP3.47□□□□□ -1.85
USP48-202ENST00000374730 RIPPLY3P57055 190 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 SYNJ2BPP57105 145 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 VAMP3Q15836 100 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 TAL2Q16559 108 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 LINC01620Q4KN68 170 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 AMTNQ6UX39 209 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 C2orf66Q6UXQ4 117 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 MAPKAPK5-AS1Q8N8E1 139 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 MAPK1IP1LQ8NDC0 245 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 SCGB3A1Q96QR1 104 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 EDA2RQ9HAV5 297 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 ZNF256Q9Y2P7 627 aaPredicted RBP3.47□□□□□ -1.85
USP48-202ENST00000374730 NACAE9PAV3 2078 aa3.47□□□□□ -1.85
USP48-202ENST00000374730 TRBV27A0A0K0K1C4 114 aa3.46□□□□□ -1.86
USP48-202ENST00000374730 K7EP13 123 aa3.46□□□□□ -1.86
USP48-202ENST00000374730 CIDEAO60543 219 aa3.46□□□□□ -1.86
USP48-202ENST00000374730 TCTEX1D4Q5JR98 221 aa3.46□□□□□ -1.86
USP48-202ENST00000374730 GTSCR1Q86UQ5 136 aa3.46□□□□□ -1.86
USP48-202ENST00000374730 C4orf3Q8WVX3 66 aa3.46□□□□□ -1.86
USP48-202ENST00000374730 BAALCQ8WXS3 180 aa3.46□□□□□ -1.86
USP48-202ENST00000374730 PTH2Q96A98 100 aa3.46□□□□□ -1.86
USP48-202ENST00000374730 TMEM141Q96I45 108 aa3.46□□□□□ -1.86
USP48-202ENST00000374730 TIMM17AQ99595 171 aa3.46□□□□□ -1.86
USP48-202ENST00000374730 CHAC1Q9BUX1 264 aa3.46□□□□□ -1.86
USP48-202ENST00000374730 CYSLTR1Q9Y271 337 aa3.46□□□□□ -1.86
USP48-202ENST00000374730 SELENOKQ9Y6D0 94 aa3.46□□□□□ -1.86
USP48-202ENST00000374730 TRBV25-1A0A075B6N4 114 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 TRAV12-2A0A075B6T6 113 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 TRAV8-6A0A0B4J262 113 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 A0A1B0GVY2 172 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 SDHAF1A6NFY7 115 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 IGIPA6NJ69 53 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 OR11H12B2RN74 326 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 M0QY20 66 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 CRYGDP07320 174 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 RHOHQ15669 191 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 SPINK13Q1W4C9 94 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 NSUN5P1Q3KNT7 163 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 UFSP1Q6NVU6 142 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 ZFP2Q6ZN57 461 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 OR11H1Q8NG94 326 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 OR4C5Q8NGB2 326 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 OR11H2Q8NH07 326 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 KIR2DL4Q99706 377 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 LINC00467Q9BRT7 94 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 SORL1Q92673 2214 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 ITPR2Q14571 2701 aa3.45□□□□□ -1.86
USP48-202ENST00000374730 FLNAP21333 2647 aaKnown RBP3.44□□□□□ -1.86
USP48-202ENST00000374730 IGLV4-69A0A075B6H9 119 aa3.44□□□□□ -1.86
USP48-202ENST00000374730 TRBV7-3A0A075B6L6 115 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms