RNA–Protein interactions for RNA: ENST00000306177.9

USP42-201, Transcript of ubiquitin specific peptidase 42, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP42, Length 5,155 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-201ENST00000306177 ZFAND3Q9H8U3 227 aa12.02□□□□□ -0.48
USP42-201ENST00000306177 RBM3P98179 157 aaKnown RBP12.02□□□□□ -0.49
USP42-201ENST00000306177 DEFB114Q30KQ6 69 aa12.02□□□□□ -0.49
USP42-201ENST00000306177 GDF5OSQ5U4N7 250 aa12.02□□□□□ -0.49
USP42-201ENST00000306177 PLXNB1O43157 2135 aa12.01□□□□□ -0.49
USP42-201ENST00000306177 TM2D2Q9BX73 214 aa12.01□□□□□ -0.49
USP42-201ENST00000306177 H3BQ85 93 aa12.01□□□□□ -0.49
USP42-201ENST00000306177 Q6ZUT4 128 aa12.01□□□□□ -0.49
USP42-201ENST00000306177 MYO9AB2RTY4 2548 aa12.01□□□□□ -0.49
USP42-201ENST00000306177 C20orf173Q96LM9 149 aa12.01□□□□□ -0.49
USP42-201ENST00000306177 Q6ZTI0 123 aa12□□□□□ -0.49
USP42-201ENST00000306177 ZNF843Q8N446 348 aa12□□□□□ -0.49
USP42-201ENST00000306177 MBD6Q96DN6 1003 aa12□□□□□ -0.49
USP42-201ENST00000306177 TAX1BP3O14907 124 aa12□□□□□ -0.49
USP42-201ENST00000306177 NCR3O14931 201 aa12□□□□□ -0.49
USP42-201ENST00000306177 RS1O15537 224 aa12□□□□□ -0.49
USP42-201ENST00000306177 TEN1Q86WV5 123 aa12□□□□□ -0.49
USP42-201ENST00000306177 MIR7-3HGQ8N6C7 128 aa12□□□□□ -0.49
USP42-201ENST00000306177 CEMP1Q6PRD7 247 aaPredicted RBP12□□□□□ -0.49
USP42-201ENST00000306177 P0DMU3 169 aa11.99□□□□□ -0.49
USP42-201ENST00000306177 FAM231AP0DMU4 169 aa11.99□□□□□ -0.49
USP42-201ENST00000306177 FAM231CP0DMU5 169 aa11.99□□□□□ -0.49
USP42-201ENST00000306177 LRP4O75096 1905 aa11.99□□□□□ -0.49
USP42-201ENST00000306177 SORL1Q92673 2214 aa11.99□□□□□ -0.49
USP42-201ENST00000306177 RNASE8Q8TDE3 154 aaKnown RBP11.98□□□□□ -0.49
USP42-201ENST00000306177 SMIM9A6NGZ8 99 aa11.97□□□□□ -0.49
USP42-201ENST00000306177 Q6ZSV7 163 aa11.96□□□□□ -0.49
USP42-201ENST00000306177 KLK5Q9Y337 293 aaPredicted RBP11.96□□□□□ -0.49
USP42-201ENST00000306177 LECT2O14960 151 aa11.96□□□□□ -0.49
USP42-201ENST00000306177 C5orf47Q569G3 176 aa11.96□□□□□ -0.49
USP42-201ENST00000306177 NFE4Q86UQ8 179 aa11.96□□□□□ -0.49
USP42-201ENST00000306177 WFDC2Q14508 124 aa11.96□□□□□ -0.5
USP42-201ENST00000306177 A0A0B4J2C4 111 aa11.95□□□□□ -0.5
USP42-201ENST00000306177 CEP295Q9C0D2 2601 aa11.95□□□□□ -0.5
USP42-201ENST00000306177 LYRM9A8MSI8 78 aa11.95□□□□□ -0.5
USP42-201ENST00000306177 Q8N6K4 173 aa11.95□□□□□ -0.5
USP42-201ENST00000306177 TRBV10-2A0A0K0K1G8 114 aa11.95□□□□□ -0.5
USP42-201ENST00000306177 DIRC1Q969H9 104 aa11.95□□□□□ -0.5
USP42-201ENST00000306177 SPANXCQ9NY87 97 aa11.95□□□□□ -0.5
USP42-201ENST00000306177 JMJD7-PLA2G4BH0Y9G9 81 aa11.94□□□□□ -0.5
USP42-201ENST00000306177 ZFAND2AQ8N6M9 145 aa11.94□□□□□ -0.5
USP42-201ENST00000306177 TRAV26-1A0A087WT03 109 aa11.94□□□□□ -0.5
USP42-201ENST00000306177 NDUFS5O43920 106 aa11.94□□□□□ -0.5
USP42-201ENST00000306177 CRIP1P50238 77 aa11.94□□□□□ -0.5
USP42-201ENST00000306177 MIAQ16674 131 aa11.94□□□□□ -0.5
USP42-201ENST00000306177 CLEC2BQ92478 149 aa11.94□□□□□ -0.5
USP42-201ENST00000306177 KIAA1549Q9HCM3 1950 aa11.94□□□□□ -0.5
USP42-201ENST00000306177 FAM222AQ5U5X8 452 aa11.94□□□□□ -0.5
USP42-201ENST00000306177 C11orf45Q8TAV5 145 aa11.94□□□□□ -0.5
USP42-201ENST00000306177 H3BT86 120 aa11.93□□□□□ -0.5
USP42-201ENST00000306177 CDSNQ15517 529 aa11.93□□□□□ -0.5
USP42-201ENST00000306177 C2CD3Q4AC94 2353 aa11.93□□□□□ -0.5
USP42-201ENST00000306177 NEXN-AS1Q8NBZ9 246 aa11.93□□□□□ -0.5
USP42-201ENST00000306177 PSMB8P28062 276 aa11.92□□□□□ -0.5
USP42-201ENST00000306177 C10orf99Q6UWK7 81 aa11.92□□□□□ -0.5
USP42-201ENST00000306177 INAFM1C9JVW0 142 aa11.92□□□□□ -0.5
USP42-201ENST00000306177 UBE2AP49459 152 aa11.92□□□□□ -0.5
USP42-201ENST00000306177 PSMG3-AS1Q96PY0 264 aa11.92□□□□□ -0.5
USP42-201ENST00000306177 A0A0J9YXY3 114 aa11.92□□□□□ -0.5
USP42-201ENST00000306177 LINC00467Q9BRT7 94 aa11.92□□□□□ -0.5
USP42-201ENST00000306177 IGHV4-28A0A0C4DH34 117 aa11.91□□□□□ -0.5
USP42-201ENST00000306177 H7C423 109 aa11.91□□□□□ -0.5
USP42-201ENST00000306177 REG3AQ06141 175 aa11.91□□□□□ -0.5
USP42-201ENST00000306177 FOXI1Q12951 378 aa11.91□□□□□ -0.5
USP42-201ENST00000306177 LINC00269Q8N2A0 174 aa11.91□□□□□ -0.5
USP42-201ENST00000306177 B5MCH6 92 aa11.9□□□□□ -0.5
USP42-201ENST00000306177 NREPQ16612 68 aa11.9□□□□□ -0.5
USP42-201ENST00000306177 IGLV2-11P01706 119 aa11.9□□□□□ -0.5
USP42-201ENST00000306177 ZNF702PQ9H963 129 aa11.9□□□□□ -0.51
USP42-201ENST00000306177 CFAP126Q5VTH2 177 aa11.89□□□□□ -0.51
USP42-201ENST00000306177 M0QY20 66 aa11.89□□□□□ -0.51
USP42-201ENST00000306177 U3KQK5 164 aa11.89□□□□□ -0.51
USP42-201ENST00000306177 UNC80Q8N2C7 3258 aa11.89□□□□□ -0.51
USP42-201ENST00000306177 IGKV3D-7A0A0C4DH55 119 aa11.89□□□□□ -0.51
USP42-201ENST00000306177 TMEM256-PLSCR3K7ERE1 68 aa11.88□□□□□ -0.51
USP42-201ENST00000306177 IGLV4-3A0A075B6K6 122 aa11.88□□□□□ -0.51
USP42-201ENST00000306177 UFSP1Q6NVU6 142 aa11.88□□□□□ -0.51
USP42-201ENST00000306177 RNF185Q96GF1 192 aa11.88□□□□□ -0.51
USP42-201ENST00000306177 TNRC6BQ9UPQ9 1833 aaKnown RBP11.88□□□□□ -0.51
USP42-201ENST00000306177 NDUFB1O75438 58 aa11.88□□□□□ -0.51
USP42-201ENST00000306177 CDKN2A-AS1Q9UH64 79 aa11.87□□□□□ -0.51
USP42-201ENST00000306177 HCFC1P51610 2035 aa11.87□□□□□ -0.51
USP42-201ENST00000306177 IL17DQ8TAD2 202 aa11.87□□□□□ -0.51
USP42-201ENST00000306177 NDUFC2O95298 119 aa11.87□□□□□ -0.51
USP42-201ENST00000306177 YPEL4Q96NS1 127 aa11.87□□□□□ -0.51
USP42-201ENST00000306177 ARHGAP32A7KAX9 2087 aa11.87□□□□□ -0.51
USP42-201ENST00000306177 HIGD2BQ4VC39 106 aa11.87□□□□□ -0.51
USP42-201ENST00000306177 TANC2Q9HCD6 1990 aa11.86□□□□□ -0.51
USP42-201ENST00000306177 ZNF22P17026 224 aaPredicted RBP11.86□□□□□ -0.51
USP42-201ENST00000306177 ANKRD11Q6UB99 2663 aaPredicted RBP11.86□□□□□ -0.51
USP42-201ENST00000306177 CHCHD10Q8WYQ3 142 aaPredicted RBP11.86□□□□□ -0.51
USP42-201ENST00000306177 COX7BP24311 80 aa11.86□□□□□ -0.51
USP42-201ENST00000306177 TRBV6-4A0A1B0GX49 114 aa11.86□□□□□ -0.51
USP42-201ENST00000306177 TMEM223A0PJW6 202 aa11.86□□□□□ -0.51
USP42-201ENST00000306177 HIST2H2BDQ6DRA6 164 aa11.86□□□□□ -0.51
USP42-201ENST00000306177 SMIM20Q8N5G0 67 aa11.85□□□□□ -0.51
USP42-201ENST00000306177 ATOX1O00244 68 aa11.85□□□□□ -0.51
USP42-201ENST00000306177 SS18L2Q9UHA2 77 aa11.85□□□□□ -0.51
USP42-201ENST00000306177 PRRC2AP48634 2157 aaKnown RBP11.85□□□□□ -0.51
USP42-201ENST00000306177 MIFP14174 115 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms