RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 FUSP35637 526 aaKnown RBP eCLIP6.94□□□□□ -1.3
LIMCH1-202ENST00000381753 FOXI1Q12951 378 aa6.94□□□□□ -1.3
LIMCH1-202ENST00000381753 JMJD1CQ15652 2540 aa6.94□□□□□ -1.3
LIMCH1-202ENST00000381753 CXCL5P42830 114 aa6.94□□□□□ -1.3
LIMCH1-202ENST00000381753 REG3GQ6UW15 175 aa6.94□□□□□ -1.3
LIMCH1-202ENST00000381753 Q6ZTC4 211 aa6.94□□□□□ -1.3
LIMCH1-202ENST00000381753 VSIRQ9H7M9 311 aa6.94□□□□□ -1.3
LIMCH1-202ENST00000381753 PSMB8P28062 276 aa6.93□□□□□ -1.3
LIMCH1-202ENST00000381753 FAM231BA6NCW3 169 aa6.93□□□□□ -1.3
LIMCH1-202ENST00000381753 FSTL3O95633 263 aa6.93□□□□□ -1.3
LIMCH1-202ENST00000381753 C2CD3Q4AC94 2353 aa6.93□□□□□ -1.3
LIMCH1-202ENST00000381753 POM121L12Q8N7R1 296 aa6.93□□□□□ -1.3
LIMCH1-202ENST00000381753 DEFB1P60022 68 aa6.93□□□□□ -1.3
LIMCH1-202ENST00000381753 ANKHD1Q8IWZ3 2542 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-202ENST00000381753 IGHV1-58A0A0C4DH39 117 aa6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 PRSS46E5RG02 174 aa6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 H0Y9J4 135 aa6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 CRYBA4P53673 196 aa6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 ZC2HC1BQ5TFG8 222 aa6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 STPG4Q8N801 248 aa6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 SYCNQ0VAF6 134 aa6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 MIAQ16674 131 aa6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 TRAV13-2A0A0B4J235 113 aa6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 FGF6P10767 208 aa6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 C1orf158Q8N1D5 194 aa6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 LOC107984640A0A0U1RRK4 108 aa6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 Q6Q795 121 aa6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 CARHSP1Q9Y2V2 147 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 ZNF524Q96C55 264 aa6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 SPANXA1Q9NS26 97 aa6.92□□□□□ -1.3
LIMCH1-202ENST00000381753 DLEU1O43261 78 aa6.91□□□□□ -1.3
LIMCH1-202ENST00000381753 RSPO1Q2MKA7 263 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-202ENST00000381753 IGLV3-1P01715 115 aa6.91□□□□□ -1.3
LIMCH1-202ENST00000381753 POU2AF1Q16633 256 aa6.91□□□□□ -1.3
LIMCH1-202ENST00000381753 Q5BKY6 102 aa6.91□□□□□ -1.3
LIMCH1-202ENST00000381753 GFRA4Q9GZZ7 299 aa6.91□□□□□ -1.3
LIMCH1-202ENST00000381753 PTPRDP23468 1912 aa6.9□□□□□ -1.3
LIMCH1-202ENST00000381753 C6orf223Q8N319 242 aa6.9□□□□□ -1.3
LIMCH1-202ENST00000381753 NUP35Q8NFH5 326 aa6.9□□□□□ -1.3
LIMCH1-202ENST00000381753 COX7B2Q8TF08 81 aa6.9□□□□□ -1.3
LIMCH1-202ENST00000381753 RNF126Q9BV68 326 aa6.9□□□□□ -1.3
LIMCH1-202ENST00000381753 SPINK6Q6UWN8 80 aa6.9□□□□□ -1.3
LIMCH1-202ENST00000381753 ZFP2Q6ZN57 461 aa6.9□□□□□ -1.3
LIMCH1-202ENST00000381753 CHCHD10Q8WYQ3 142 aaPredicted RBP6.9□□□□□ -1.3
LIMCH1-202ENST00000381753 PLAC8L1A1L4L8 177 aa6.9□□□□□ -1.31
LIMCH1-202ENST00000381753 CCDC140Q96MF4 163 aa6.9□□□□□ -1.31
LIMCH1-202ENST00000381753 DYSFO75923 2080 aa6.89□□□□□ -1.31
LIMCH1-202ENST00000381753 K7EQG2 157 aa6.89□□□□□ -1.31
LIMCH1-202ENST00000381753 RPL28P46779 137 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-202ENST00000381753 RBM3P98179 157 aaKnown RBP6.89□□□□□ -1.31
LIMCH1-202ENST00000381753 Q6ZRM9 215 aa6.89□□□□□ -1.31
LIMCH1-202ENST00000381753 ZNF664Q8N3J9 261 aa6.89□□□□□ -1.31
LIMCH1-202ENST00000381753 TRBV10-1A0A0K0K1A3 114 aa6.89□□□□□ -1.31
LIMCH1-202ENST00000381753 LGALS9BQ3B8N2 356 aa6.89□□□□□ -1.31
LIMCH1-202ENST00000381753 HRCT1Q6UXD1 115 aa6.89□□□□□ -1.31
LIMCH1-202ENST00000381753 C9JAW5 83 aa6.89□□□□□ -1.31
LIMCH1-202ENST00000381753 ZFYVE26Q68DK2 2539 aa6.88□□□□□ -1.31
LIMCH1-202ENST00000381753 UTF1Q5T230 341 aa6.88□□□□□ -1.31
LIMCH1-202ENST00000381753 ABCA12Q86UK0 2595 aa6.88□□□□□ -1.31
LIMCH1-202ENST00000381753 RNF222A6NCQ9 220 aa6.88□□□□□ -1.31
LIMCH1-202ENST00000381753 J3QRE1 110 aa6.88□□□□□ -1.31
LIMCH1-202ENST00000381753 CEP192Q8TEP8 1941 aa6.88□□□□□ -1.31
LIMCH1-202ENST00000381753 C9JQL5 133 aa6.88□□□□□ -1.31
LIMCH1-202ENST00000381753 SEC61GP60059 68 aa6.88□□□□□ -1.31
LIMCH1-202ENST00000381753 LELP1Q5T871 98 aa6.88□□□□□ -1.31
LIMCH1-202ENST00000381753 Q6ZS46 218 aa6.88□□□□□ -1.31
LIMCH1-202ENST00000381753 C1orf137Q5JT78 98 aa6.88□□□□□ -1.31
LIMCH1-202ENST00000381753 Q8N8P6 123 aa6.88□□□□□ -1.31
LIMCH1-202ENST00000381753 PROK1P58294 105 aa6.87□□□□□ -1.31
LIMCH1-202ENST00000381753 PPDPFQ9H3Y8 114 aa6.87□□□□□ -1.31
LIMCH1-202ENST00000381753 HERV-K104P63124 156 aa6.87□□□□□ -1.31
LIMCH1-202ENST00000381753 LHFPL1Q86WI0 220 aa6.87□□□□□ -1.31
LIMCH1-202ENST00000381753 IGLV1-51P01701 117 aa6.87□□□□□ -1.31
LIMCH1-202ENST00000381753 SPATA12Q7Z6I5 190 aa6.87□□□□□ -1.31
LIMCH1-202ENST00000381753 SHANK1Q9Y566 2161 aa6.87□□□□□ -1.31
LIMCH1-202ENST00000381753 WI2-2373I1.2A0A1W2PRP0 233 aa6.86□□□□□ -1.31
LIMCH1-202ENST00000381753 WFDC1Q9HC57 220 aa6.86□□□□□ -1.31
LIMCH1-202ENST00000381753 MDFICQ9P1T7 246 aa6.86□□□□□ -1.31
LIMCH1-202ENST00000381753 ADAMTS20P59510 1910 aa6.86□□□□□ -1.31
LIMCH1-202ENST00000381753 LY6LH3BQJ8 138 aa6.86□□□□□ -1.31
LIMCH1-202ENST00000381753 IGLV9-49A0A0B4J1Y8 123 aa6.86□□□□□ -1.31
LIMCH1-202ENST00000381753 IGLV2-14P01704 120 aa6.86□□□□□ -1.31
LIMCH1-202ENST00000381753 TRAV12-1A0A0B4J245 112 aa6.86□□□□□ -1.31
LIMCH1-202ENST00000381753 TRBV6-1A0A0K0K1D8 114 aa6.86□□□□□ -1.31
LIMCH1-202ENST00000381753 DIRC1Q969H9 104 aa6.86□□□□□ -1.31
LIMCH1-202ENST00000381753 COL5A1P20908 1838 aaPredicted RBP6.86□□□□□ -1.31
LIMCH1-202ENST00000381753 LINC01556Q5JQF7 62 aa6.85□□□□□ -1.31
LIMCH1-202ENST00000381753 C20orf78Q9BR46 151 aa6.85□□□□□ -1.31
LIMCH1-202ENST00000381753 UFSP1Q6NVU6 142 aa6.85□□□□□ -1.31
LIMCH1-202ENST00000381753 SBSPONQ8IVN8 264 aa6.85□□□□□ -1.31
LIMCH1-202ENST00000381753 SORL1Q92673 2214 aa6.85□□□□□ -1.31
LIMCH1-202ENST00000381753 CASC2Q6XLA1 102 aa6.85□□□□□ -1.31
LIMCH1-202ENST00000381753 TMEM258P61165 79 aa6.85□□□□□ -1.31
LIMCH1-202ENST00000381753 WNK1Q9H4A3 2382 aa6.85□□□□□ -1.31
LIMCH1-202ENST00000381753 CIRBP-AS1Q8TBR5 109 aa6.84□□□□□ -1.31
LIMCH1-202ENST00000381753 PRR14LQ5THK1 2151 aa6.84□□□□□ -1.31
LIMCH1-202ENST00000381753 A0A1W2PPR1 153 aa6.84□□□□□ -1.31
LIMCH1-202ENST00000381753 SYS1-DBNDD2H3BUS1 97 aa6.84□□□□□ -1.31
LIMCH1-202ENST00000381753 TRACP01848 142 aa6.84□□□□□ -1.31
LIMCH1-202ENST00000381753 BVES-AS1Q5T3Y7 98 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms