RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 U3KQK5 164 aa11.03□□□□□ -0.64
SHROOM1-208ENST00000617339 CLPSL1A2RUU4 121 aa11.03□□□□□ -0.64
SHROOM1-208ENST00000617339 SCGB1C2P0DMR2 95 aa11.03□□□□□ -0.64
SHROOM1-208ENST00000617339 PGPEP1Q9NXJ5 209 aa11.03□□□□□ -0.64
SHROOM1-208ENST00000617339 B5MCH6 92 aa11.02□□□□□ -0.64
SHROOM1-208ENST00000617339 MGPP08493 103 aa11.02□□□□□ -0.64
SHROOM1-208ENST00000617339 ZFAND3Q9H8U3 227 aa11.02□□□□□ -0.64
SHROOM1-208ENST00000617339 HIGD1BQ9P298 99 aa11.02□□□□□ -0.64
SHROOM1-208ENST00000617339 RRN3P1Q2M238 152 aa11.02□□□□□ -0.65
SHROOM1-208ENST00000617339 RHPN1-AS1Q9BWJ2 59 aa11.02□□□□□ -0.65
SHROOM1-208ENST00000617339 ZNF469Q96JG9 3925 aaPredicted RBP11.02□□□□□ -0.65
SHROOM1-208ENST00000617339 TM2D2Q9BX73 214 aa11.02□□□□□ -0.65
SHROOM1-208ENST00000617339 RNF183Q96D59 192 aa11.01□□□□□ -0.65
SHROOM1-208ENST00000617339 RNASE4P34096 147 aaKnown RBP11.01□□□□□ -0.65
SHROOM1-208ENST00000617339 NSUN5P1Q3KNT7 163 aa11.01□□□□□ -0.65
SHROOM1-208ENST00000617339 MYOZ3Q8TDC0 251 aa11.01□□□□□ -0.65
SHROOM1-208ENST00000617339 FABP5P3A8MUU1 101 aa11□□□□□ -0.65
SHROOM1-208ENST00000617339 PSMG4Q5JS54 123 aa11□□□□□ -0.65
SHROOM1-208ENST00000617339 GATD1Q8NB37 220 aa11□□□□□ -0.65
SHROOM1-208ENST00000617339 FOXI1Q12951 378 aa10.99□□□□□ -0.65
SHROOM1-208ENST00000617339 FAM74A4Q5TZK3 123 aa10.99□□□□□ -0.65
SHROOM1-208ENST00000617339 RNF185Q96GF1 192 aa10.99□□□□□ -0.65
SHROOM1-208ENST00000617339 C20orf173Q96LM9 149 aa10.99□□□□□ -0.65
SHROOM1-208ENST00000617339 C11orf21Q9P2W6 132 aa10.99□□□□□ -0.65
SHROOM1-208ENST00000617339 TMEM238LA0A1B0GVL6 79 aa10.99□□□□□ -0.65
SHROOM1-208ENST00000617339 UBR5O95071 2799 aaPredicted RBP10.99□□□□□ -0.65
SHROOM1-208ENST00000617339 LINC01549A6NIU2 74 aa10.99□□□□□ -0.65
SHROOM1-208ENST00000617339 LYPD1Q8N2G4 141 aa10.99□□□□□ -0.65
SHROOM1-208ENST00000617339 KLHL30-AS1Q8NEE0 82 aa10.99□□□□□ -0.65
SHROOM1-208ENST00000617339 UNC79Q9P2D8 2635 aa10.99□□□□□ -0.65
SHROOM1-208ENST00000617339 TRBV7-1A0A0A6YYK4 115 aa10.98□□□□□ -0.65
SHROOM1-208ENST00000617339 XGP55808 180 aa10.98□□□□□ -0.65
SHROOM1-208ENST00000617339 ZFP2Q6ZN57 461 aa10.98□□□□□ -0.65
SHROOM1-208ENST00000617339 HLA-DRB4P13762 266 aa10.98□□□□□ -0.65
SHROOM1-208ENST00000617339 SRSF1Q07955 248 aaKnown RBP eCLIP10.98□□□□□ -0.651e-7■■□□□ 13.1
SHROOM1-208ENST00000617339 PDE6HQ13956 83 aa10.98□□□□□ -0.65
SHROOM1-208ENST00000617339 TCTEX1D4Q5JR98 221 aa10.98□□□□□ -0.65
SHROOM1-208ENST00000617339 SCGB1D4Q6XE38 83 aa10.98□□□□□ -0.65
SHROOM1-208ENST00000617339 NFE4Q86UQ8 179 aa10.98□□□□□ -0.65
SHROOM1-208ENST00000617339 PRO0461Q9UI25 63 aa10.98□□□□□ -0.65
SHROOM1-208ENST00000617339 HLA-DRB4X5D2U9 266 aa10.98□□□□□ -0.65
SHROOM1-208ENST00000617339 H7C2G1 150 aa10.98□□□□□ -0.65
SHROOM1-208ENST00000617339 SRSF9Q13242 221 aaKnown RBP eCLIP10.98□□□□□ -0.65
SHROOM1-208ENST00000617339 SMIM20Q8N5G0 67 aa10.97□□□□□ -0.65
SHROOM1-208ENST00000617339 TRAV12-2A0A075B6T6 113 aa10.97□□□□□ -0.65
SHROOM1-208ENST00000617339 TRAV8-2A0A0B4J237 113 aa10.97□□□□□ -0.65
SHROOM1-208ENST00000617339 OR11H12B2RN74 326 aa10.97□□□□□ -0.65
SHROOM1-208ENST00000617339 FHL3Q13643 280 aa10.97□□□□□ -0.65
SHROOM1-208ENST00000617339 OR11H1Q8NG94 326 aa10.97□□□□□ -0.65
SHROOM1-208ENST00000617339 OR11H2Q8NH07 326 aa10.97□□□□□ -0.65
SHROOM1-208ENST00000617339 NXT2Q9NPJ8 142 aaKnown RBP10.97□□□□□ -0.65
SHROOM1-208ENST00000617339 ATP5LO75964 103 aa10.97□□□□□ -0.65
SHROOM1-208ENST00000617339 CFAP161Q6P656 301 aa10.97□□□□□ -0.65
SHROOM1-208ENST00000617339 CDIP1Q9H305 208 aa10.97□□□□□ -0.65
SHROOM1-208ENST00000617339 SMR3AQ99954 134 aa10.96□□□□□ -0.65
SHROOM1-208ENST00000617339 NBEAL2Q6ZNJ1 2754 aa10.96□□□□□ -0.65
SHROOM1-208ENST00000617339 PRSS29PA6NIE9 313 aa10.96□□□□□ -0.65
SHROOM1-208ENST00000617339 PRR9Q5T870 116 aa10.96□□□□□ -0.65
SHROOM1-208ENST00000617339 C1QTNF4Q9BXJ3 329 aa10.96□□□□□ -0.65
SHROOM1-208ENST00000617339 ZMAT4Q9H898 229 aa10.96□□□□□ -0.65
SHROOM1-208ENST00000617339 GNRH2O43555 120 aa10.96□□□□□ -0.66
SHROOM1-208ENST00000617339 C18orf65Q6ZTR6 163 aa10.96□□□□□ -0.66
SHROOM1-208ENST00000617339 KIR2DL4Q99706 377 aa10.96□□□□□ -0.66
SHROOM1-208ENST00000617339 ID1P41134 155 aa10.95□□□□□ -0.66
SHROOM1-208ENST00000617339 SMCPP49901 116 aaPredicted RBP10.95□□□□□ -0.66
SHROOM1-208ENST00000617339 EMP1P54849 157 aa10.95□□□□□ -0.66
SHROOM1-208ENST00000617339 IGKV3D-20A0A0C4DH25 116 aa10.95□□□□□ -0.66
SHROOM1-208ENST00000617339 Q6ZUT4 128 aa10.95□□□□□ -0.66
SHROOM1-208ENST00000617339 MORN3Q6PF18 240 aaPredicted RBP10.95□□□□□ -0.66
SHROOM1-208ENST00000617339 PHLDA3Q9Y5J5 127 aa10.95□□□□□ -0.66
SHROOM1-208ENST00000617339 TRBV20-1A0A075B6N2 111 aa10.94□□□□□ -0.66
SHROOM1-208ENST00000617339 TRBV6-1A0A0K0K1D8 114 aa10.94□□□□□ -0.66
SHROOM1-208ENST00000617339 A6NDX4 124 aa10.94□□□□□ -0.66
SHROOM1-208ENST00000617339 PRM2P04554 102 aa10.94□□□□□ -0.66
SHROOM1-208ENST00000617339 TTC32Q5I0X7 151 aa10.94□□□□□ -0.66
SHROOM1-208ENST00000617339 DLX4Q92988 240 aaPredicted RBP10.94□□□□□ -0.66
SHROOM1-208ENST00000617339 TRAV12-3A0A0B4J271 114 aa10.93□□□□□ -0.66
SHROOM1-208ENST00000617339 IGHG2P01859 326 aa10.93□□□□□ -0.66
SHROOM1-208ENST00000617339 LAGE3Q14657 143 aa10.93□□□□□ -0.66
SHROOM1-208ENST00000617339 TEX29Q8N6K0 151 aa10.93□□□□□ -0.66
SHROOM1-208ENST00000617339 C14orf178Q8N769 122 aaPredicted RBP10.93□□□□□ -0.66
SHROOM1-208ENST00000617339 C3orf56Q8N813 242 aa10.93□□□□□ -0.66
SHROOM1-208ENST00000617339 IGHV4-31P0DP07 118 aa10.93□□□□□ -0.66
SHROOM1-208ENST00000617339 Q8N8P6 123 aa10.93□□□□□ -0.66
SHROOM1-208ENST00000617339 LINC00477Q96M19 166 aa10.93□□□□□ -0.66
SHROOM1-208ENST00000617339 VPREB3Q9UKI3 123 aa10.93□□□□□ -0.66
SHROOM1-208ENST00000617339 MYMXA0A1B0GTQ4 84 aa10.92□□□□□ -0.66
SHROOM1-208ENST00000617339 ZNF815PA8K554 130 aa10.92□□□□□ -0.66
SHROOM1-208ENST00000617339 IGLC6P0CF74 106 aa10.92□□□□□ -0.66
SHROOM1-208ENST00000617339 SNRPD3P62318 126 aaKnown RBP10.92□□□□□ -0.66
SHROOM1-208ENST00000617339 HERV-K104P63124 156 aa10.92□□□□□ -0.66
SHROOM1-208ENST00000617339 TRBV7-3A0A075B6L6 115 aa10.92□□□□□ -0.66
SHROOM1-208ENST00000617339 DAZ1Q9NQZ3 744 aaKnown RBP10.92□□□□□ -0.66
SHROOM1-208ENST00000617339 SETXQ7Z333 2677 aaKnown RBP10.92□□□□□ -0.66
SHROOM1-208ENST00000617339 A0A087WX48 190 aa10.92□□□□□ -0.66
SHROOM1-208ENST00000617339 SLURP1P55000 103 aa10.92□□□□□ -0.66
SHROOM1-208ENST00000617339 PLEKHB2Q96CS7 222 aa10.92□□□□□ -0.66
SHROOM1-208ENST00000617339 SLC50A1Q9BRV3 221 aa10.92□□□□□ -0.66
SHROOM1-208ENST00000617339 CFAP126Q5VTH2 177 aa10.91□□□□□ -0.66
SHROOM1-208ENST00000617339 SCGB3A1Q96QR1 104 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms