RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 CNFNQ9BYD5 112 aa6.82□□□□□ -1.32
CUX1-216ENST00000558469 EDA2RQ9HAV5 297 aa6.82□□□□□ -1.32
CUX1-216ENST00000558469 STAB2Q8WWQ8 2551 aa6.82□□□□□ -1.32
CUX1-216ENST00000558469 A0A087WWL8 130 aa6.81□□□□□ -1.32
CUX1-216ENST00000558469 TRAV4A0A0B4J268 109 aa6.81□□□□□ -1.32
CUX1-216ENST00000558469 A8MWV9 139 aa6.81□□□□□ -1.32
CUX1-216ENST00000558469 RS1O15537 224 aa6.81□□□□□ -1.32
CUX1-216ENST00000558469 HTN3P15516 51 aa6.81□□□□□ -1.32
CUX1-216ENST00000558469 RIGQ13278 110 aa6.81□□□□□ -1.32
CUX1-216ENST00000558469 FAM74A4Q5TZK3 123 aa6.81□□□□□ -1.32
CUX1-216ENST00000558469 MRPL54Q6P161 138 aaKnown RBP6.81□□□□□ -1.32
CUX1-216ENST00000558469 Q6ZTC4 211 aa6.81□□□□□ -1.32
CUX1-216ENST00000558469 C14orf178Q8N769 122 aaPredicted RBP6.81□□□□□ -1.32
CUX1-216ENST00000558469 POM121L12Q8N7R1 296 aa6.81□□□□□ -1.32
CUX1-216ENST00000558469 ZNF479Q96JC4 524 aa6.81□□□□□ -1.32
CUX1-216ENST00000558469 BTF3L4Q96K17 158 aa6.81□□□□□ -1.32
CUX1-216ENST00000558469 SAMD10Q9BYL1 202 aa6.81□□□□□ -1.32
CUX1-216ENST00000558469 IGHV3-73A0A0B4J1V6 119 aa6.8□□□□□ -1.32
CUX1-216ENST00000558469 GHRHP01286 108 aa6.8□□□□□ -1.32
CUX1-216ENST00000558469 ATP5G1P05496 136 aa6.8□□□□□ -1.32
CUX1-216ENST00000558469 TRGC1P0CF51 173 aa6.8□□□□□ -1.32
CUX1-216ENST00000558469 SMIM17P0DL12 118 aa6.8□□□□□ -1.32
CUX1-216ENST00000558469 EVI2AP22794 236 aa6.8□□□□□ -1.32
CUX1-216ENST00000558469 CAMPP49913 170 aa6.8□□□□□ -1.32
CUX1-216ENST00000558469 TMEM88Q6PEY1 159 aa6.8□□□□□ -1.32
CUX1-216ENST00000558469 CBLN2Q8IUK8 224 aa6.8□□□□□ -1.32
CUX1-216ENST00000558469 C18orf15Q96N68 181 aa6.8□□□□□ -1.32
CUX1-216ENST00000558469 AP1S3Q96PC3 154 aa6.8□□□□□ -1.32
CUX1-216ENST00000558469 TRAV9-1A0A075B6T8 112 aa6.79□□□□□ -1.32
CUX1-216ENST00000558469 TRGV4A0A0C4DH28 118 aa6.79□□□□□ -1.32
CUX1-216ENST00000558469 A0A1B0GW15 77 aa6.79□□□□□ -1.32
CUX1-216ENST00000558469 SCO1O75880 301 aa6.79□□□□□ -1.32
CUX1-216ENST00000558469 CRYGDP07320 174 aa6.79□□□□□ -1.32
CUX1-216ENST00000558469 HBBP68871 147 aa6.79□□□□□ -1.32
CUX1-216ENST00000558469 SMIM15Q7Z3B0 74 aa6.79□□□□□ -1.32
CUX1-216ENST00000558469 ATP5L2Q7Z4Y8 100 aa6.79□□□□□ -1.32
CUX1-216ENST00000558469 SMCO4Q9NRQ5 59 aa6.79□□□□□ -1.32
CUX1-216ENST00000558469 DEFB131BA0A096LNP1 70 aa6.78□□□□□ -1.32
CUX1-216ENST00000558469 TGIF2-C20orf24A0A0A6YYL0 155 aa6.78□□□□□ -1.32
CUX1-216ENST00000558469 A0A1B0GXF2 115 aa6.78□□□□□ -1.32
CUX1-216ENST00000558469 F5H768 121 aa6.78□□□□□ -1.32
CUX1-216ENST00000558469 S100A8P05109 93 aa6.78□□□□□ -1.32
CUX1-216ENST00000558469 MGPP08493 103 aa6.78□□□□□ -1.32
CUX1-216ENST00000558469 HOXA5P20719 270 aa6.78□□□□□ -1.32
CUX1-216ENST00000558469 FHL2Q14192 279 aa6.78□□□□□ -1.32
CUX1-216ENST00000558469 ELOBQ15370 118 aa6.78□□□□□ -1.32
CUX1-216ENST00000558469 UFSP1Q6NVU6 142 aa6.78□□□□□ -1.32
CUX1-216ENST00000558469 ZFP2Q6ZN57 461 aa6.78□□□□□ -1.32
CUX1-216ENST00000558469 TMEM191AQ9H0A3 160 aa6.78□□□□□ -1.32
CUX1-216ENST00000558469 DPH3P1Q9H4G8 78 aa6.78□□□□□ -1.32
CUX1-216ENST00000558469 KIF25-AS1Q9Y6Z4 181 aa6.78□□□□□ -1.32
CUX1-216ENST00000558469 TRAV10A0A0B4J240 114 aa6.77□□□□□ -1.33
CUX1-216ENST00000558469 F5H697 171 aa6.77□□□□□ -1.33
CUX1-216ENST00000558469 RHODO00212 210 aa6.77□□□□□ -1.33
CUX1-216ENST00000558469 CIDEAO60543 219 aa6.77□□□□□ -1.33
CUX1-216ENST00000558469 RAB4BP61018 213 aa6.77□□□□□ -1.33
CUX1-216ENST00000558469 ZNF56Q15929 161 aa6.77□□□□□ -1.33
CUX1-216ENST00000558469 LINC00315P59091 139 aa6.76□□□□□ -1.33
CUX1-216ENST00000558469 RASL11AQ6T310 242 aa6.76□□□□□ -1.33
CUX1-216ENST00000558469 Q6ZSN1 163 aa6.76□□□□□ -1.33
CUX1-216ENST00000558469 PHLDA1Q8WV24 401 aaPredicted RBP6.76□□□□□ -1.33
CUX1-216ENST00000558469 YPEL4Q96NS1 127 aa6.76□□□□□ -1.33
CUX1-216ENST00000558469 HHLA3Q9XRX5 114 aa6.76□□□□□ -1.33
CUX1-216ENST00000558469 DNAH7Q8WXX0 4024 aa6.75□□□□□ -1.33
CUX1-216ENST00000558469 TRBV24-1A0A075B6N3 115 aa6.75□□□□□ -1.33
CUX1-216ENST00000558469 A0A0J9YY99 117 aa6.75□□□□□ -1.33
CUX1-216ENST00000558469 GATA1P15976 413 aaPredicted RBP6.75□□□□□ -1.33
CUX1-216ENST00000558469 RAB4AP20338 218 aa6.75□□□□□ -1.33
CUX1-216ENST00000558469 FAM104BQ5XKR9 115 aa6.75□□□□□ -1.33
CUX1-216ENST00000558469 TMEM136Q6ZRR5 245 aa6.75□□□□□ -1.33
CUX1-216ENST00000558469 AMN1Q8IY45 258 aa6.75□□□□□ -1.33
CUX1-216ENST00000558469 SLC25A29Q8N8R3 303 aa6.75□□□□□ -1.33
CUX1-216ENST00000558469 FAM210BQ96KR6 192 aa6.75□□□□□ -1.33
CUX1-216ENST00000558469 WWC2-AS2Q96NR7 200 aa6.75□□□□□ -1.33
CUX1-216ENST00000558469 PRO0255Q9UI72 69 aa6.75□□□□□ -1.33
CUX1-216ENST00000558469 TRAV26-1A0A087WT03 109 aa6.74□□□□□ -1.33
CUX1-216ENST00000558469 TRAV26-2A0A0B4J265 109 aa6.74□□□□□ -1.33
CUX1-216ENST00000558469 TRBV6-4A0A1B0GX49 114 aa6.74□□□□□ -1.33
CUX1-216ENST00000558469 PAX4O43316 350 aa6.74□□□□□ -1.33
CUX1-216ENST00000558469 CRYBA4P53673 196 aa6.74□□□□□ -1.33
CUX1-216ENST00000558469 SLAQ13239 276 aa6.74□□□□□ -1.33
CUX1-216ENST00000558469 SUMO4Q6EEV6 95 aa6.74□□□□□ -1.33
CUX1-216ENST00000558469 GATD1Q8NB37 220 aa6.74□□□□□ -1.33
CUX1-216ENST00000558469 RNF185Q96GF1 192 aa6.74□□□□□ -1.33
CUX1-216ENST00000558469 GNB1LQ9BYB4 327 aa6.74□□□□□ -1.33
CUX1-216ENST00000558469 CSMD3Q7Z407 3707 aa6.73□□□□□ -1.33
CUX1-216ENST00000558469 K7EQD1 137 aa6.73□□□□□ -1.33
CUX1-216ENST00000558469 P0DMU3 169 aa6.73□□□□□ -1.33
CUX1-216ENST00000558469 FAM231AP0DMU4 169 aa6.73□□□□□ -1.33
CUX1-216ENST00000558469 FAM231CP0DMU5 169 aa6.73□□□□□ -1.33
CUX1-216ENST00000558469 COX19Q49B96 90 aa6.73□□□□□ -1.33
CUX1-216ENST00000558469 MRPL51Q4U2R6 128 aaKnown RBP6.73□□□□□ -1.33
CUX1-216ENST00000558469 CEMP1Q6PRD7 247 aaPredicted RBP6.73□□□□□ -1.33
CUX1-216ENST00000558469 MUC7Q8TAX7 377 aa6.73□□□□□ -1.33
CUX1-216ENST00000558469 VSIG2Q96IQ7 327 aa6.73□□□□□ -1.33
CUX1-216ENST00000558469 PRADC1Q9BSG0 188 aa6.73□□□□□ -1.33
CUX1-216ENST00000558469 LOC100131303A0A0U1RQF7 123 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 NUPR2A6NF83 97 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 COLCA2A8K830 154 aa6.72□□□□□ -1.33
CUX1-216ENST00000558469 IGLL5B9A064 214 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms