RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 CREBBPQ92793 2442 aa7.34□□□□□ -1.24
SS18-203ENST00000415083 OR11H12B2RN74 326 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 MED14OSP0DP75 135 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 UCNP55089 124 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 TAL2Q16559 108 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 OR11H1Q8NG94 326 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 OR11H2Q8NH07 326 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 C10orf105Q8TEF2 133 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 FAM104AQ969W3 186 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 IGHV4OR15-8A0A075B7B6 117 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 A0A087WW49 117 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 A0A087WWL8 130 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 F8W1H4 67 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 RRN3P1Q2M238 152 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 ORMDL2Q53FV1 153 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 PSMG4Q5JS54 123 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 PTH2Q96A98 100 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 PGPEP1Q9NXJ5 209 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 LOC107984156A0A0G2JMH3 177 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 ARL17AQ8IVW1 177 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 ZNF418Q8TF45 676 aaPredicted RBP7.33□□□□□ -1.24
SS18-203ENST00000415083 MDFICQ9P1T7 246 aa7.33□□□□□ -1.24
SS18-203ENST00000415083 NACAE9PAV3 2078 aa7.32□□□□□ -1.24
SS18-203ENST00000415083 CIDEAO60543 219 aa7.32□□□□□ -1.24
SS18-203ENST00000415083 SCGB1D4Q6XE38 83 aa7.32□□□□□ -1.24
SS18-203ENST00000415083 ZFP2Q6ZN57 461 aa7.32□□□□□ -1.24
SS18-203ENST00000415083 OPRPNQ99935 248 aaPredicted RBP7.32□□□□□ -1.24
SS18-203ENST00000415083 MRPL16Q9NX20 251 aaKnown RBP7.32□□□□□ -1.24
SS18-203ENST00000415083 APOMO95445 188 aa7.32□□□□□ -1.24
SS18-203ENST00000415083 CD7P09564 240 aa7.32□□□□□ -1.24
SS18-203ENST00000415083 PF4V1P10720 104 aa7.32□□□□□ -1.24
SS18-203ENST00000415083 S100A4P26447 101 aaKnown RBP7.32□□□□□ -1.24
SS18-203ENST00000415083 UBE2D1P51668 147 aa7.32□□□□□ -1.24
SS18-203ENST00000415083 DOPEY2Q9Y3R5 2298 aa7.32□□□□□ -1.24
SS18-203ENST00000415083 LINC01549A6NIU2 74 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 RPL11P62913 178 aaKnown RBP7.31□□□□□ -1.24
SS18-203ENST00000415083 NRGNQ92686 78 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 PRORYQ9H606 182 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 SORL1Q92673 2214 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 CSPG4Q6UVK1 2322 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 TRAV12-2A0A075B6T6 113 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 P0DMU3 169 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 FAM231AP0DMU4 169 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 FAM231CP0DMU5 169 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 SRSF9Q13242 221 aaKnown RBP eCLIP7.31□□□□□ -1.24
SS18-203ENST00000415083 TP53TG1Q9Y2A0 90 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 TRAV12-3A0A0B4J271 114 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 ZNF815PA8K554 130 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 HOXA3O43365 443 aaPredicted RBP7.31□□□□□ -1.24
SS18-203ENST00000415083 RBMY1A1P0DJD3 496 aaKnown RBP7.31□□□□□ -1.24
SS18-203ENST00000415083 RBMY1CP0DJD4 496 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 PSMB2P49721 201 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 FHL3Q13643 280 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 RBMY1FQ15415 496 aaKnown RBP7.31□□□□□ -1.24
SS18-203ENST00000415083 USMG5Q96IX5 58 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.31□□□□□ -1.241e-7■■■■□ 26.1
SS18-203ENST00000415083 TEX15Q9BXT5 2789 aa7.31□□□□□ -1.24
SS18-203ENST00000415083 J3QR89 54 aa7.3□□□□□ -1.24
SS18-203ENST00000415083 C9orf85Q96MD7 179 aa7.3□□□□□ -1.24
SS18-203ENST00000415083 CLUHP3Q96NS8 147 aa7.3□□□□□ -1.24
SS18-203ENST00000415083 IGHV3-16A0A0C4DH30 117 aa7.3□□□□□ -1.24
SS18-203ENST00000415083 H3BUA1 57 aa7.3□□□□□ -1.24
SS18-203ENST00000415083 NDUFS8O00217 210 aa7.3□□□□□ -1.24
SS18-203ENST00000415083 PSMB8P28062 276 aa7.3□□□□□ -1.24
SS18-203ENST00000415083 Q9UF83 564 aa7.3□□□□□ -1.24
SS18-203ENST00000415083 ZNF580Q9UK33 172 aa7.3□□□□□ -1.24
SS18-203ENST00000415083 TRBV7-9A0A0J9YWB2 115 aa7.3□□□□□ -1.24
SS18-203ENST00000415083 A0A0J9YY99 117 aa7.3□□□□□ -1.24
SS18-203ENST00000415083 DAZ1Q9NQZ3 744 aaKnown RBP7.3□□□□□ -1.24
SS18-203ENST00000415083 TSPAN13O95857 204 aa7.29□□□□□ -1.24
SS18-203ENST00000415083 PRM2P04554 102 aa7.29□□□□□ -1.24
SS18-203ENST00000415083 RPL32P62910 135 aaKnown RBP7.29□□□□□ -1.24
SS18-203ENST00000415083 NFE4Q86UQ8 179 aa7.29□□□□□ -1.24
SS18-203ENST00000415083 SYT8Q8NBV8 401 aa7.29□□□□□ -1.24
SS18-203ENST00000415083 POLQO75417 2590 aa7.29□□□□□ -1.24
SS18-203ENST00000415083 LGALS9O00182 355 aa7.29□□□□□ -1.24
SS18-203ENST00000415083 TRBV27A0A0K0K1C4 114 aa7.28□□□□□ -1.24
SS18-203ENST00000415083 M0QY20 66 aa7.28□□□□□ -1.24
SS18-203ENST00000415083 IGKV3-20P01619 116 aa7.28□□□□□ -1.24
SS18-203ENST00000415083 ZNF876PQ49A33 203 aa7.28□□□□□ -1.24
SS18-203ENST00000415083 Q8N1Y9 231 aa7.28□□□□□ -1.24
SS18-203ENST00000415083 NF1P21359 2839 aa7.28□□□□□ -1.24
SS18-203ENST00000415083 SDHAF1A6NFY7 115 aa7.27□□□□□ -1.24
SS18-203ENST00000415083 IGHV3-30P01768 117 aa7.27□□□□□ -1.24
SS18-203ENST00000415083 IGHV4-59P01825 116 aa7.27□□□□□ -1.24
SS18-203ENST00000415083 ZNF688P0C7X2 276 aa7.27□□□□□ -1.24
SS18-203ENST00000415083 IGHV3-30-5P0DP03 117 aa7.27□□□□□ -1.24
SS18-203ENST00000415083 CKS1BP61024 79 aa7.27□□□□□ -1.24
SS18-203ENST00000415083 PIEZO1Q92508 2521 aa7.27□□□□□ -1.25
SS18-203ENST00000415083 DOPEY1Q5JWR5 2465 aa7.27□□□□□ -1.25
SS18-203ENST00000415083 A0A096LNT2 108 aa7.27□□□□□ -1.25
SS18-203ENST00000415083 A0A0J9YX75 114 aa7.27□□□□□ -1.25
SS18-203ENST00000415083 UBE2D3P61077 147 aa7.27□□□□□ -1.25
SS18-203ENST00000415083 UBE2D2P62837 147 aa7.27□□□□□ -1.25
SS18-203ENST00000415083 CFAP126Q5VTH2 177 aa7.27□□□□□ -1.25
SS18-203ENST00000415083 K7EMT4 169 aa7.27□□□□□ -1.25
SS18-203ENST00000415083 CFC1BP0CG36 223 aa7.27□□□□□ -1.25
SS18-203ENST00000415083 CFC1P0CG37 223 aa7.27□□□□□ -1.25
SS18-203ENST00000415083 SPATA25Q9BR10 227 aa7.27□□□□□ -1.25
SS18-203ENST00000415083 PIMREGQ9BSJ6 248 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 113.8 ms