RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 IGHV1-69DA0A0B4J2H0 117 aa13.37□□□□□ -0.27
SQSTM1-202ENST00000389805 TRBV12-3P01733 135 aa13.37□□□□□ -0.27
SQSTM1-202ENST00000389805 IGHV1-69P01742 117 aa13.37□□□□□ -0.27
SQSTM1-202ENST00000389805 ORMDL2Q53FV1 153 aa13.37□□□□□ -0.27
SQSTM1-202ENST00000389805 TRAV8-2A0A0B4J237 113 aa13.37□□□□□ -0.27
SQSTM1-202ENST00000389805 CFC1BP0CG36 223 aa13.37□□□□□ -0.27
SQSTM1-202ENST00000389805 CFC1P0CG37 223 aa13.37□□□□□ -0.27
SQSTM1-202ENST00000389805 COX6B1P14854 86 aa13.37□□□□□ -0.27
SQSTM1-202ENST00000389805 TRPT1Q86TN4 253 aaKnown RBP13.37□□□□□ -0.27
SQSTM1-202ENST00000389805 NRGNQ92686 78 aa13.37□□□□□ -0.27
SQSTM1-202ENST00000389805 CCL19Q99731 98 aa13.37□□□□□ -0.27
SQSTM1-202ENST00000389805 TRAV41A0A0B4J266 112 aa13.36□□□□□ -0.27
SQSTM1-202ENST00000389805 IGHV4-30-2A0A087WSY4 118 aa13.36□□□□□ -0.27
SQSTM1-202ENST00000389805 DUSP14O95147 198 aaKnown RBP13.36□□□□□ -0.27
SQSTM1-202ENST00000389805 C11orf86A6NJI1 115 aa13.35□□□□□ -0.27
SQSTM1-202ENST00000389805 C9JAW5 83 aa13.35□□□□□ -0.27
SQSTM1-202ENST00000389805 NHLRC4P0CG21 123 aaPredicted RBP13.35□□□□□ -0.27
SQSTM1-202ENST00000389805 PRR9Q5T870 116 aa13.35□□□□□ -0.27
SQSTM1-202ENST00000389805 ZANQ9Y493 2812 aa13.35□□□□□ -0.27
SQSTM1-202ENST00000389805 A0A0J9YY99 117 aa13.35□□□□□ -0.27
SQSTM1-202ENST00000389805 MOB4Q9Y3A3 225 aa13.35□□□□□ -0.27
SQSTM1-202ENST00000389805 ARL3P36405 182 aa13.35□□□□□ -0.27
SQSTM1-202ENST00000389805 CRLF1O75462 422 aa13.34□□□□□ -0.27
SQSTM1-202ENST00000389805 ATP5J2P56134 94 aa13.34□□□□□ -0.27
SQSTM1-202ENST00000389805 METTL26Q96S19 204 aa13.34□□□□□ -0.27
SQSTM1-202ENST00000389805 TRBV7-1A0A0A6YYK4 115 aa13.34□□□□□ -0.27
SQSTM1-202ENST00000389805 TRAV4A0A0B4J268 109 aa13.34□□□□□ -0.27
SQSTM1-202ENST00000389805 IGHV3-11P01762 117 aa13.34□□□□□ -0.27
SQSTM1-202ENST00000389805 DEFB1P60022 68 aa13.34□□□□□ -0.27
SQSTM1-202ENST00000389805 KLK9Q2XQG4 91 aa13.34□□□□□ -0.27
SQSTM1-202ENST00000389805 LYRM7Q5U5X0 104 aa13.34□□□□□ -0.27
SQSTM1-202ENST00000389805 UNQ9165/PRO28630Q6UXU0 137 aa13.34□□□□□ -0.27
SQSTM1-202ENST00000389805 SLC50A1Q9BRV3 221 aa13.34□□□□□ -0.27
SQSTM1-202ENST00000389805 PIMREGQ9BSJ6 248 aa13.34□□□□□ -0.27
SQSTM1-202ENST00000389805 KLK9Q9UKQ9 250 aa13.34□□□□□ -0.27
SQSTM1-202ENST00000389805 TSPEAR-AS2P59090 65 aa13.33□□□□□ -0.28
SQSTM1-202ENST00000389805 BLCAPP62952 87 aa13.33□□□□□ -0.28
SQSTM1-202ENST00000389805 C10orf105Q8TEF2 133 aa13.33□□□□□ -0.28
SQSTM1-202ENST00000389805 SLC25A20O43772 301 aa13.33□□□□□ -0.28
SQSTM1-202ENST00000389805 S100A4P26447 101 aaKnown RBP13.33□□□□□ -0.28
SQSTM1-202ENST00000389805 CRYGDP07320 174 aa13.32□□□□□ -0.28
SQSTM1-202ENST00000389805 TMEM170BQ5T4T1 132 aa13.32□□□□□ -0.28
SQSTM1-202ENST00000389805 CFAP161Q6P656 301 aa13.32□□□□□ -0.28
SQSTM1-202ENST00000389805 CCDC179H3BU77 68 aa13.32□□□□□ -0.28
SQSTM1-202ENST00000389805 H3BUX3 64 aa13.32□□□□□ -0.28
SQSTM1-202ENST00000389805 C10orf126Q8N4M7 172 aa13.32□□□□□ -0.28
SQSTM1-202ENST00000389805 GAGE2BQ13066 116 aa13.32□□□□□ -0.28
SQSTM1-202ENST00000389805 GAGE2EQ4V326 116 aa13.32□□□□□ -0.28
SQSTM1-202ENST00000389805 GAGE2DQ9UEU5 116 aa13.32□□□□□ -0.28
SQSTM1-202ENST00000389805 C19orf54Q5BKX5 351 aa13.31□□□□□ -0.28
SQSTM1-202ENST00000389805 AVPP01185 164 aa13.31□□□□□ -0.28
SQSTM1-202ENST00000389805 IGHV3-30P01768 117 aa13.31□□□□□ -0.28
SQSTM1-202ENST00000389805 IGHV3-30-5P0DP03 117 aa13.31□□□□□ -0.28
SQSTM1-202ENST00000389805 DOPEY2Q9Y3R5 2298 aa13.3□□□□□ -0.28
SQSTM1-202ENST00000389805 SNCGO76070 127 aa13.3□□□□□ -0.28
SQSTM1-202ENST00000389805 CITED1Q99966 193 aa13.3□□□□□ -0.28
SQSTM1-202ENST00000389805 PRO1854Q9UHT4 67 aa13.3□□□□□ -0.28
SQSTM1-202ENST00000389805 TMEM262E9PQX1 116 aa13.3□□□□□ -0.28
SQSTM1-202ENST00000389805 RPL39P62891 51 aaKnown RBP13.3□□□□□ -0.28
SQSTM1-202ENST00000389805 IGKV3-7A0A075B6H7 116 aa13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 RBAKDNA6NC62 111 aa13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 SBSPONQ8IVN8 264 aa13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 NTN5Q8WTR8 489 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 BEX4Q9NWD9 120 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 IGLV4-69A0A075B6H9 119 aa13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 RNF223E7ERA6 249 aa13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 C20orf173Q96LM9 149 aa13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 PHLDA3Q9Y5J5 127 aa13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 U3KQE9 123 aa13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 LRRK2Q5S007 2527 aa13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 TSHBP01222 138 aa13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 NDUFV3P56181 108 aaKnown RBP13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 SHISA2Q6UWI4 295 aa13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 C16orf92Q96LL3 132 aa13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 VCX2Q9H322 139 aa13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 TP53TG1Q9Y2A0 90 aa13.29□□□□□ -0.28
SQSTM1-202ENST00000389805 TLN2Q9Y4G6 2542 aa13.28□□□□□ -0.28
SQSTM1-202ENST00000389805 IGHV3-64A0A075B6Q5 118 aa13.28□□□□□ -0.28
SQSTM1-202ENST00000389805 IGHV4-4A0A075B6R2 117 aa13.28□□□□□ -0.28
SQSTM1-202ENST00000389805 HERVK_113P61574 105 aa13.28□□□□□ -0.28
SQSTM1-202ENST00000389805 SMIM20Q8N5G0 67 aa13.28□□□□□ -0.28
SQSTM1-202ENST00000389805 DPH3P1Q9H4G8 78 aa13.28□□□□□ -0.28
SQSTM1-202ENST00000389805 FBN2P35556 2912 aa13.27□□□□□ -0.28
SQSTM1-202ENST00000389805 A4D1N5 150 aa13.27□□□□□ -0.28
SQSTM1-202ENST00000389805 TTC32Q5I0X7 151 aa13.27□□□□□ -0.28
SQSTM1-202ENST00000389805 RHODO00212 210 aa13.27□□□□□ -0.29
SQSTM1-202ENST00000389805 ELANEP08246 267 aa13.27□□□□□ -0.29
SQSTM1-202ENST00000389805 CREBBPQ92793 2442 aa13.27□□□□□ -0.29
SQSTM1-202ENST00000389805 PF4V1P10720 104 aa13.26□□□□□ -0.29
SQSTM1-202ENST00000389805 Q1RN00 199 aa13.26□□□□□ -0.29
SQSTM1-202ENST00000389805 ZNF462Q96JM2 2506 aa13.26□□□□□ -0.29
SQSTM1-202ENST00000389805 GNRH2O43555 120 aa13.26□□□□□ -0.29
SQSTM1-202ENST00000389805 EIF4EBP3O60516 100 aaPredicted RBP13.26□□□□□ -0.29
SQSTM1-202ENST00000389805 HERV-K104P63124 156 aa13.26□□□□□ -0.29
SQSTM1-202ENST00000389805 TRAV2A0A0B4J234 112 aa13.26□□□□□ -0.29
SQSTM1-202ENST00000389805 FAM223BA6NKX1 122 aa13.26□□□□□ -0.29
SQSTM1-202ENST00000389805 RPL11P62913 178 aaKnown RBP13.26□□□□□ -0.29
SQSTM1-202ENST00000389805 TMEM95Q3KNT9 176 aa13.26□□□□□ -0.29
SQSTM1-202ENST00000389805 GPHB5Q86YW7 130 aa13.26□□□□□ -0.29
SQSTM1-202ENST00000389805 FAM223AQ8IWN6 122 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms