RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 C14orf178Q8N769 122 aaPredicted RBP11.57□□□□□ -0.56
CCDC40-202ENST00000374876 MYOZ3Q8TDC0 251 aa11.57□□□□□ -0.56
CCDC40-202ENST00000374876 KLLNB2CW77 178 aa11.57□□□□□ -0.56
CCDC40-202ENST00000374876 ATP5LO75964 103 aa11.57□□□□□ -0.56
CCDC40-202ENST00000374876 TCTAP57738 103 aa11.57□□□□□ -0.56
CCDC40-202ENST00000374876 C2orf91Q6ZV80 131 aa11.57□□□□□ -0.56
CCDC40-202ENST00000374876 Q6ZVH6 145 aa11.57□□□□□ -0.56
CCDC40-202ENST00000374876 UBE2E2Q96LR5 201 aa11.57□□□□□ -0.56
CCDC40-202ENST00000374876 LGALS1P09382 135 aaKnown RBP11.56□□□□□ -0.56
CCDC40-202ENST00000374876 FGF6P10767 208 aa11.56□□□□□ -0.56
CCDC40-202ENST00000374876 ODF1Q14990 250 aa11.56□□□□□ -0.56
CCDC40-202ENST00000374876 FAM159AQ6UWV7 190 aa11.56□□□□□ -0.56
CCDC40-202ENST00000374876 PKD1L1Q8TDX9 2849 aa11.55□□□□□ -0.56
CCDC40-202ENST00000374876 MGPP08493 103 aa11.55□□□□□ -0.56
CCDC40-202ENST00000374876 ZNF688P0C7X2 276 aa11.55□□□□□ -0.56
CCDC40-202ENST00000374876 RNASE3P12724 160 aaKnown RBP11.55□□□□□ -0.56
CCDC40-202ENST00000374876 SNRPD3P62318 126 aaKnown RBP11.55□□□□□ -0.56
CCDC40-202ENST00000374876 ZNF124Q15973 351 aa11.55□□□□□ -0.56
CCDC40-202ENST00000374876 PSMG4Q5JS54 123 aa11.55□□□□□ -0.56
CCDC40-202ENST00000374876 AP1S3Q96PC3 154 aa11.55□□□□□ -0.56
CCDC40-202ENST00000374876 SMIM2Q9BVW6 85 aa11.55□□□□□ -0.56
CCDC40-202ENST00000374876 SYNJ2BPP57105 145 aa11.55□□□□□ -0.56
CCDC40-202ENST00000374876 BOD1L2Q8IYS8 172 aa11.55□□□□□ -0.56
CCDC40-202ENST00000374876 NMUP48645 174 aa11.54□□□□□ -0.56
CCDC40-202ENST00000374876 C4orf3Q8WVX3 66 aa11.54□□□□□ -0.56
CCDC40-202ENST00000374876 RAX2Q96IS3 184 aa11.54□□□□□ -0.56
CCDC40-202ENST00000374876 SUMO2P61956 95 aaKnown RBP11.53□□□□□ -0.56
CCDC40-202ENST00000374876 RASL10AQ92737 203 aa11.53□□□□□ -0.56
CCDC40-202ENST00000374876 C20orf78Q9BR46 151 aa11.53□□□□□ -0.56
CCDC40-202ENST00000374876 ZMAT4Q9H898 229 aa11.53□□□□□ -0.56
CCDC40-202ENST00000374876 IGHV4OR15-8A0A075B7B6 117 aa11.53□□□□□ -0.56
CCDC40-202ENST00000374876 A0A087WW49 117 aa11.53□□□□□ -0.56
CCDC40-202ENST00000374876 TRAV12-3A0A0B4J271 114 aa11.53□□□□□ -0.56
CCDC40-202ENST00000374876 IGKCP01834 107 aa11.53□□□□□ -0.56
CCDC40-202ENST00000374876 PF4P02776 101 aa11.53□□□□□ -0.56
CCDC40-202ENST00000374876 OR11H1Q8NG94 326 aa11.53□□□□□ -0.56
CCDC40-202ENST00000374876 CCL24O00175 119 aa11.52□□□□□ -0.56
CCDC40-202ENST00000374876 LGALS9O00182 355 aa11.52□□□□□ -0.56
CCDC40-202ENST00000374876 DPM2O94777 84 aa11.52□□□□□ -0.56
CCDC40-202ENST00000374876 ORMDL2Q53FV1 153 aa11.52□□□□□ -0.56
CCDC40-202ENST00000374876 OR9G4Q8NGQ1 327 aa11.52□□□□□ -0.56
CCDC40-202ENST00000374876 RPL39LQ96EH5 51 aaKnown RBP11.52□□□□□ -0.56
CCDC40-202ENST00000374876 C7orf71A4D174 169 aa11.52□□□□□ -0.57
CCDC40-202ENST00000374876 K7EQG2 157 aa11.52□□□□□ -0.57
CCDC40-202ENST00000374876 NXPH4O95158 308 aa11.52□□□□□ -0.57
CCDC40-202ENST00000374876 HOXD3P31249 432 aaPredicted RBP11.52□□□□□ -0.57
CCDC40-202ENST00000374876 TMEM97Q5BJF2 176 aa11.52□□□□□ -0.57
CCDC40-202ENST00000374876 ODF3Q96PU9 254 aa11.52□□□□□ -0.57
CCDC40-202ENST00000374876 A0A0J9YX75 114 aa11.51□□□□□ -0.57
CCDC40-202ENST00000374876 PPP1R17O96001 155 aa11.51□□□□□ -0.57
CCDC40-202ENST00000374876 IGKV3-20P01619 116 aa11.51□□□□□ -0.57
CCDC40-202ENST00000374876 CD7P09564 240 aa11.51□□□□□ -0.57
CCDC40-202ENST00000374876 PCP2Q8IVA1 136 aa11.51□□□□□ -0.57
CCDC40-202ENST00000374876 HHLA3Q9XRX5 114 aa11.51□□□□□ -0.57
CCDC40-202ENST00000374876 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.5□□□□□ -0.57
CCDC40-202ENST00000374876 TAX1BP3O14907 124 aa11.5□□□□□ -0.57
CCDC40-202ENST00000374876 SIVA1O15304 175 aa11.5□□□□□ -0.57
CCDC40-202ENST00000374876 PTTG1IPP53801 180 aa11.5□□□□□ -0.57
CCDC40-202ENST00000374876 K7EMI3 77 aa11.5□□□□□ -0.57
CCDC40-202ENST00000374876 CMYA5Q8N3K9 4069 aa11.49□□□□□ -0.57
CCDC40-202ENST00000374876 UBE2V1Q13404 147 aa11.49□□□□□ -0.57
CCDC40-202ENST00000374876 MGAM2Q2M2H8 2515 aa11.49□□□□□ -0.57
CCDC40-202ENST00000374876 SEC11AP67812 179 aa11.48□□□□□ -0.57
CCDC40-202ENST00000374876 VAMP3Q15836 100 aa11.48□□□□□ -0.57
CCDC40-202ENST00000374876 LINC00482Q8N8I6 264 aa11.48□□□□□ -0.57
CCDC40-202ENST00000374876 MRPL35Q9NZE8 188 aaKnown RBP11.48□□□□□ -0.57
CCDC40-202ENST00000374876 TRAV12-2A0A075B6T6 113 aa11.48□□□□□ -0.57
CCDC40-202ENST00000374876 A0A087WX48 190 aa11.48□□□□□ -0.57
CCDC40-202ENST00000374876 SLURP1P55000 103 aa11.48□□□□□ -0.57
CCDC40-202ENST00000374876 HSD52Q0P140 79 aa11.48□□□□□ -0.57
CCDC40-202ENST00000374876 POM121L12Q8N7R1 296 aa11.48□□□□□ -0.57
CCDC40-202ENST00000374876 SCGB3A1Q96QR1 104 aa11.48□□□□□ -0.57
CCDC40-202ENST00000374876 NOTCH3Q9UM47 2321 aa11.48□□□□□ -0.57
CCDC40-202ENST00000374876 CBY3A6NI87 242 aa11.47□□□□□ -0.57
CCDC40-202ENST00000374876 CCL25O15444 150 aa11.47□□□□□ -0.57
CCDC40-202ENST00000374876 DUSP14O95147 198 aaKnown RBP11.47□□□□□ -0.57
CCDC40-202ENST00000374876 CDKN1BP46527 198 aa11.47□□□□□ -0.57
CCDC40-202ENST00000374876 FHL3Q13643 280 aa11.47□□□□□ -0.57
CCDC40-202ENST00000374876 ZC2HC1BQ5TFG8 222 aa11.47□□□□□ -0.57
CCDC40-202ENST00000374876 GTSCR1Q86UQ5 136 aa11.47□□□□□ -0.57
CCDC40-202ENST00000374876 TOMM6Q96B49 74 aa11.47□□□□□ -0.57
CCDC40-202ENST00000374876 KIF25-AS1Q9Y6Z4 181 aa11.47□□□□□ -0.57
CCDC40-202ENST00000374876 IGKV2D-26A0A0A0MRZ7 120 aa11.47□□□□□ -0.57
CCDC40-202ENST00000374876 LINC01619G3V211 115 aa11.47□□□□□ -0.57
CCDC40-202ENST00000374876 PLNP26678 52 aa11.47□□□□□ -0.57
CCDC40-202ENST00000374876 CSTL1Q9H114 145 aa11.47□□□□□ -0.57
CCDC40-202ENST00000374876 LINC00315P59091 139 aa11.46□□□□□ -0.57
CCDC40-202ENST00000374876 SPINK13Q1W4C9 94 aa11.46□□□□□ -0.57
CCDC40-202ENST00000374876 ERASQ7Z444 233 aa11.46□□□□□ -0.57
CCDC40-202ENST00000374876 WFDC9Q8NEX5 89 aa11.46□□□□□ -0.57
CCDC40-202ENST00000374876 A0A087WWL8 130 aa11.45□□□□□ -0.58
CCDC40-202ENST00000374876 TRAV12-1A0A0B4J245 112 aa11.45□□□□□ -0.58
CCDC40-202ENST00000374876 IGHV3-16A0A0C4DH30 117 aa11.45□□□□□ -0.58
CCDC40-202ENST00000374876 F5H697 171 aa11.45□□□□□ -0.58
CCDC40-202ENST00000374876 ADAMTSL5Q6ZMM2 481 aa11.45□□□□□ -0.58
CCDC40-202ENST00000374876 FOXI2Q6ZQN5 318 aa11.45□□□□□ -0.58
CCDC40-202ENST00000374876 DLX4Q92988 240 aaPredicted RBP11.45□□□□□ -0.58
CCDC40-202ENST00000374876 JPT2Q9H910 190 aa11.45□□□□□ -0.58
CCDC40-202ENST00000374876 A6NDN8 102 aa11.45□□□□□ -0.58
CCDC40-202ENST00000374876 H7C1H1 209 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms