RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 HOXA4Q00056 320 aaPredicted RBP5□□□□□ -1.61
ZNF540-201ENST00000316433 FP248Q71RG6 208 aaPredicted RBP5□□□□□ -1.61
ZNF540-201ENST00000316433 ZNF491Q8N8L2 437 aa5□□□□□ -1.61
ZNF540-201ENST00000316433 U3KQE9 123 aa5□□□□□ -1.61
ZNF540-201ENST00000316433 NRACQ8N912 160 aa5□□□□□ -1.61
ZNF540-201ENST00000316433 AMELXQ99217 191 aa5□□□□□ -1.61
ZNF540-201ENST00000316433 TRAV8-3A0A0A6YYJ7 113 aa5□□□□□ -1.61
ZNF540-201ENST00000316433 M0R3E3 92 aa5□□□□□ -1.61
ZNF540-201ENST00000316433 PRB4P10163 310 aaPredicted RBP5□□□□□ -1.61
ZNF540-201ENST00000316433 EGR2P11161 476 aaPredicted RBP5□□□□□ -1.61
ZNF540-201ENST00000316433 UBE2E1P51965 193 aa5□□□□□ -1.61
ZNF540-201ENST00000316433 ORMDL2Q53FV1 153 aa5□□□□□ -1.61
ZNF540-201ENST00000316433 PAPPA-AS1Q5QFB9 102 aa5□□□□□ -1.61
ZNF540-201ENST00000316433 FAM216BQ8N7L0 139 aa5□□□□□ -1.61
ZNF540-201ENST00000316433 SLC50A1Q9BRV3 221 aa5□□□□□ -1.61
ZNF540-201ENST00000316433 TECTAO75443 2155 aa4.99□□□□□ -1.61
ZNF540-201ENST00000316433 C11orf86A6NJI1 115 aa4.99□□□□□ -1.61
ZNF540-201ENST00000316433 USP17L23D6RBM5 183 aa4.99□□□□□ -1.61
ZNF540-201ENST00000316433 ERCC8Q13216 396 aa4.99□□□□□ -1.61
ZNF540-201ENST00000316433 FAM223AQ8IWN6 122 aa4.99□□□□□ -1.61
ZNF540-201ENST00000316433 CCL13Q99616 98 aa4.99□□□□□ -1.61
ZNF540-201ENST00000316433 IGHV3-64DA0A0J9YX35 117 aa4.99□□□□□ -1.61
ZNF540-201ENST00000316433 F8W735 103 aaPredicted RBP4.99□□□□□ -1.61
ZNF540-201ENST00000316433 PRSS2P07478 247 aa4.99□□□□□ -1.61
ZNF540-201ENST00000316433 PMAIP1Q13794 54 aa4.99□□□□□ -1.61
ZNF540-201ENST00000316433 C19orf54Q5BKX5 351 aa4.99□□□□□ -1.61
ZNF540-201ENST00000316433 FAM201AQ5SY85 155 aa4.99□□□□□ -1.61
ZNF540-201ENST00000316433 ARRDC1-AS1Q9H2J1 176 aa4.99□□□□□ -1.61
ZNF540-201ENST00000316433 M0R1B8 84 aa4.98□□□□□ -1.61
ZNF540-201ENST00000316433 TFF1P04155 84 aa4.98□□□□□ -1.61
ZNF540-201ENST00000316433 LGALS3P17931 250 aaKnown RBP4.98□□□□□ -1.61
ZNF540-201ENST00000316433 DAND5Q8N907 189 aa4.98□□□□□ -1.61
ZNF540-201ENST00000316433 CNEP1R1Q8N9A8 125 aa4.98□□□□□ -1.61
ZNF540-201ENST00000316433 RNASE6Q93091 150 aaKnown RBP4.98□□□□□ -1.61
ZNF540-201ENST00000316433 KNCNA6PVL3 124 aa4.98□□□□□ -1.61
ZNF540-201ENST00000316433 RNF182Q8N6D2 247 aa4.98□□□□□ -1.61
ZNF540-201ENST00000316433 SMIM2Q9BVW6 85 aa4.98□□□□□ -1.61
ZNF540-201ENST00000316433 TRIOO75962 3097 aa4.98□□□□□ -1.61
ZNF540-201ENST00000316433 IGLV4-69A0A075B6H9 119 aa4.98□□□□□ -1.61
ZNF540-201ENST00000316433 A8MZ25 164 aa4.98□□□□□ -1.61
ZNF540-201ENST00000316433 BUB3O43684 328 aa4.98□□□□□ -1.61
ZNF540-201ENST00000316433 GFRALQ6UXV0 394 aa4.98□□□□□ -1.61
ZNF540-201ENST00000316433 C9orf47Q6ZRZ4 202 aa4.98□□□□□ -1.61
ZNF540-201ENST00000316433 Q96MF0 132 aa4.98□□□□□ -1.61
ZNF540-201ENST00000316433 SPEGQ15772 3267 aa4.98□□□□□ -1.61
ZNF540-201ENST00000316433 TRAV26-2A0A0B4J265 109 aa4.97□□□□□ -1.61
ZNF540-201ENST00000316433 FAM223BA6NKX1 122 aa4.97□□□□□ -1.61
ZNF540-201ENST00000316433 H3BUA1 57 aa4.97□□□□□ -1.61
ZNF540-201ENST00000316433 PPP1R17O96001 155 aa4.97□□□□□ -1.61
ZNF540-201ENST00000316433 DLX1P56177 255 aa4.97□□□□□ -1.61
ZNF540-201ENST00000316433 CNTRLQ7Z7A1 2325 aa4.97□□□□□ -1.61
ZNF540-201ENST00000316433 TNCP24821 2201 aa4.97□□□□□ -1.61
ZNF540-201ENST00000316433 SPRY3O43610 288 aa4.97□□□□□ -1.61
ZNF540-201ENST00000316433 CIRBPQ14011 172 aaKnown RBP4.97□□□□□ -1.61
ZNF540-201ENST00000316433 C2orf66Q6UXQ4 117 aa4.97□□□□□ -1.61
ZNF540-201ENST00000316433 DAZ4Q86SG3 579 aaKnown RBP4.97□□□□□ -1.61
ZNF540-201ENST00000316433 FAM110DQ8TAY7 271 aaPredicted RBP4.97□□□□□ -1.61
ZNF540-201ENST00000316433 DAZ1Q9NQZ3 744 aaKnown RBP4.97□□□□□ -1.61
ZNF540-201ENST00000316433 MYO15AQ9UKN7 3530 aa4.97□□□□□ -1.61
ZNF540-201ENST00000316433 A0A087WVE0 104 aa4.96□□□□□ -1.61
ZNF540-201ENST00000316433 IGHV1-69DA0A0B4J2H0 117 aa4.96□□□□□ -1.61
ZNF540-201ENST00000316433 I3L3M4 83 aa4.96□□□□□ -1.61
ZNF540-201ENST00000316433 TRGV3P03979 118 aa4.96□□□□□ -1.61
ZNF540-201ENST00000316433 CD164Q04900 197 aa4.96□□□□□ -1.61
ZNF540-201ENST00000316433 FANCD2OSQ96PS1 177 aa4.96□□□□□ -1.61
ZNF540-201ENST00000316433 LAMA1P25391 3075 aa4.96□□□□□ -1.62
ZNF540-201ENST00000316433 LYZP61626 148 aa4.96□□□□□ -1.62
ZNF540-201ENST00000316433 RUSC1-AS1Q66K80 236 aa4.96□□□□□ -1.62
ZNF540-201ENST00000316433 Q6JHZ5 121 aa4.96□□□□□ -1.62
ZNF540-201ENST00000316433 IGKV3D-7A0A0C4DH55 119 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 CCL21O00585 134 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 IGHG2P01859 326 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 ZNF80P51504 273 aaPredicted RBP4.95□□□□□ -1.62
ZNF540-201ENST00000316433 MRPS36P82909 103 aaKnown RBP4.95□□□□□ -1.62
ZNF540-201ENST00000316433 DAZ2Q13117 558 aaKnown RBP4.95□□□□□ -1.62
ZNF540-201ENST00000316433 DYNAPQ8N1N2 210 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 LEAP2Q969E1 77 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 DAZ3Q9NR90 486 aaKnown RBP4.95□□□□□ -1.62
ZNF540-201ENST00000316433 IGHV3OR16-10A0A075B7F0 116 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 INAFM2P0DMQ5 153 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 HCP5Q6MZN7 132 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 COPS9Q8WXC6 57 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 ZFAND3Q9H8U3 227 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 BRWD1Q9NSI6 2320 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 PRUNE2Q8WUY3 3088 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 CEP290O15078 2479 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 SVILO95425 2214 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 RBMY1BA6NDE4 496 aaKnown RBP4.95□□□□□ -1.62
ZNF540-201ENST00000316433 RBMY1EA6NEQ0 496 aaKnown RBP4.95□□□□□ -1.62
ZNF540-201ENST00000316433 RBMY1DP0C7P1 496 aaKnown RBP4.95□□□□□ -1.62
ZNF540-201ENST00000316433 RBMY1A1P0DJD3 496 aaKnown RBP4.95□□□□□ -1.62
ZNF540-201ENST00000316433 RBMY1CP0DJD4 496 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 RBMY1FQ15415 496 aaKnown RBP4.95□□□□□ -1.62
ZNF540-201ENST00000316433 C11orf71Q6IPW1 123 aa4.95□□□□□ -1.62
ZNF540-201ENST00000316433 CCL3L1P16619 93 aa4.94□□□□□ -1.62
ZNF540-201ENST00000316433 XCL1P47992 114 aa4.94□□□□□ -1.62
ZNF540-201ENST00000316433 SS18Q15532 418 aa4.94□□□□□ -1.62
ZNF540-201ENST00000316433 C20orf197Q8N268 126 aa4.94□□□□□ -1.62
ZNF540-201ENST00000316433 XCL2Q9UBD3 114 aa4.94□□□□□ -1.62
ZNF540-201ENST00000316433 IGHV4OR15-8A0A075B7B6 117 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 1028.2 ms