RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 SFTA3P0C7M3 94 aa7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 RAB5CP51148 216 aa7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 CRYBA4P53673 196 aa7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 C10orf91Q5T1B1 145 aa7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 ZNF479Q96JC4 524 aa7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 KCNS1Q96KK3 526 aa7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 UPK3BQ9BT76 320 aa7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 NKX6-2Q9C056 277 aaPredicted RBP7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 Q9H8V8 135 aa7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 SDF2L1Q9HCN8 221 aa7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 PRO0255Q9UI72 69 aa7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 HHLA3Q9XRX5 114 aa7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 MRPS16Q9Y3D3 137 aaKnown RBP7.09□□□□□ -1.27
CCDC88C-206ENST00000553437 F8W036 122 aa7.08□□□□□ -1.28
CCDC88C-206ENST00000553437 PEX7O00628 323 aa7.08□□□□□ -1.28
CCDC88C-206ENST00000553437 PFN1P07737 140 aaKnown RBP7.08□□□□□ -1.28
CCDC88C-206ENST00000553437 SLAQ13239 276 aa7.08□□□□□ -1.28
CCDC88C-206ENST00000553437 SMUG1Q53HV7 270 aa7.08□□□□□ -1.28
CCDC88C-206ENST00000553437 SAPCD1Q5SSQ6 148 aa7.08□□□□□ -1.28
CCDC88C-206ENST00000553437 C1orf134Q5TEV5 83 aa7.08□□□□□ -1.28
CCDC88C-206ENST00000553437 MBD3L1Q8WWY6 194 aa7.08□□□□□ -1.28
CCDC88C-206ENST00000553437 SEC11CQ9BY50 192 aa7.08□□□□□ -1.28
CCDC88C-206ENST00000553437 NACAE9PAV3 2078 aa7.07□□□□□ -1.28
CCDC88C-206ENST00000553437 TRAV4A0A0B4J268 109 aa7.07□□□□□ -1.28
CCDC88C-206ENST00000553437 SNAPINO95295 136 aa7.07□□□□□ -1.28
CCDC88C-206ENST00000553437 ATRAIDQ6UW56 229 aa7.07□□□□□ -1.28
CCDC88C-206ENST00000553437 COX8CQ7Z4L0 72 aa7.07□□□□□ -1.28
CCDC88C-206ENST00000553437 LYPD6BQ8NI32 183 aa7.07□□□□□ -1.28
CCDC88C-206ENST00000553437 HIST1H2BAQ96A08 127 aa7.07□□□□□ -1.28
CCDC88C-206ENST00000553437 C9orf85Q96MD7 179 aa7.07□□□□□ -1.28
CCDC88C-206ENST00000553437 KRTAP1-5Q9BYS1 174 aa7.07□□□□□ -1.28
CCDC88C-206ENST00000553437 ICOSQ9Y6W8 199 aa7.07□□□□□ -1.28
CCDC88C-206ENST00000553437 ARL2-SNX15V9GYD0 113 aa7.07□□□□□ -1.28
CCDC88C-206ENST00000553437 IGKV3D-20A0A0C4DH25 116 aa7.06□□□□□ -1.28
CCDC88C-206ENST00000553437 TRGV4A0A0C4DH28 118 aa7.06□□□□□ -1.28
CCDC88C-206ENST00000553437 UMAD1C9J7I0 102 aa7.06□□□□□ -1.28
CCDC88C-206ENST00000553437 J3QL48 77 aa7.06□□□□□ -1.28
CCDC88C-206ENST00000553437 ADCYAP1P18509 176 aa7.06□□□□□ -1.28
CCDC88C-206ENST00000553437 CRIP1P50238 77 aa7.06□□□□□ -1.28
CCDC88C-206ENST00000553437 PPT1P50897 306 aa7.06□□□□□ -1.28
CCDC88C-206ENST00000553437 PEA15Q15121 130 aa7.06□□□□□ -1.28
CCDC88C-206ENST00000553437 SOHLH1Q5JUK2 328 aa7.06□□□□□ -1.28
CCDC88C-206ENST00000553437 DPPA3Q6W0C5 159 aa7.06□□□□□ -1.28
CCDC88C-206ENST00000553437 Q86TA4 180 aa7.06□□□□□ -1.28
CCDC88C-206ENST00000553437 CLRN3Q8NCR9 226 aa7.06□□□□□ -1.28
CCDC88C-206ENST00000553437 SFT2D1Q8WV19 159 aa7.06□□□□□ -1.28
CCDC88C-206ENST00000553437 MUC4Q99102 2169 aa7.05□□□□□ -1.28
CCDC88C-206ENST00000553437 TRBV6-1A0A0K0K1D8 114 aa7.05□□□□□ -1.28
CCDC88C-206ENST00000553437 K7EQD1 137 aa7.05□□□□□ -1.28
CCDC88C-206ENST00000553437 RNASE3P12724 160 aaKnown RBP7.05□□□□□ -1.28
CCDC88C-206ENST00000553437 MRPL23Q16540 153 aaKnown RBP7.05□□□□□ -1.28
CCDC88C-206ENST00000553437 LYPD5Q6UWN5 251 aa7.05□□□□□ -1.28
CCDC88C-206ENST00000553437 ZNF575Q86XF7 245 aa7.05□□□□□ -1.28
CCDC88C-206ENST00000553437 C6orf223Q8N319 242 aa7.05□□□□□ -1.28
CCDC88C-206ENST00000553437 OR4C5Q8NGB2 326 aa7.05□□□□□ -1.28
CCDC88C-206ENST00000553437 FAM213BQ8TBF2 198 aa7.05□□□□□ -1.28
CCDC88C-206ENST00000553437 PTH2Q96A98 100 aa7.05□□□□□ -1.28
CCDC88C-206ENST00000553437 TCEAL7Q9BRU2 100 aa7.05□□□□□ -1.28
CCDC88C-206ENST00000553437 HERC1Q15751 4861 aa7.05□□□□□ -1.28
CCDC88C-206ENST00000553437 PGPEP1LA6NFU8 196 aa7.04□□□□□ -1.28
CCDC88C-206ENST00000553437 FABP5P3A8MUU1 101 aa7.04□□□□□ -1.28
CCDC88C-206ENST00000553437 C9JCJ5 164 aa7.04□□□□□ -1.28
CCDC88C-206ENST00000553437 RS1O15537 224 aa7.04□□□□□ -1.28
CCDC88C-206ENST00000553437 PAGE4O60829 102 aa7.04□□□□□ -1.28
CCDC88C-206ENST00000553437 GATA1P15976 413 aaPredicted RBP7.04□□□□□ -1.28
CCDC88C-206ENST00000553437 SRSF3P84103 164 aaKnown RBP7.04□□□□□ -1.28
CCDC88C-206ENST00000553437 TNP2Q05952 138 aa7.04□□□□□ -1.28
CCDC88C-206ENST00000553437 ZNF876PQ49A33 203 aa7.04□□□□□ -1.28
CCDC88C-206ENST00000553437 FAM74A3Q4VXF1 159 aa7.04□□□□□ -1.28
CCDC88C-206ENST00000553437 CFAP126Q5VTH2 177 aa7.04□□□□□ -1.28
CCDC88C-206ENST00000553437 CST9LP1Q5W188 147 aa7.04□□□□□ -1.28
CCDC88C-206ENST00000553437 ZC2HC1AQ96GY0 325 aa7.04□□□□□ -1.28
CCDC88C-206ENST00000553437 FMC1Q96HJ9 113 aa7.04□□□□□ -1.28
CCDC88C-206ENST00000553437 ZFP30Q9Y2G7 519 aa7.04□□□□□ -1.28
CCDC88C-206ENST00000553437 LOC100131303A0A0U1RQF7 123 aa7.03□□□□□ -1.28
CCDC88C-206ENST00000553437 A0A1B0GV50 99 aa7.03□□□□□ -1.28
CCDC88C-206ENST00000553437 A0A1W2PPQ1 181 aa7.03□□□□□ -1.28
CCDC88C-206ENST00000553437 NXPH4O95158 308 aa7.03□□□□□ -1.28
CCDC88C-206ENST00000553437 LTAP01374 205 aa7.03□□□□□ -1.28
CCDC88C-206ENST00000553437 ORM1P02763 201 aa7.03□□□□□ -1.28
CCDC88C-206ENST00000553437 H2AFB1P0C5Y9 115 aa7.03□□□□□ -1.28
CCDC88C-206ENST00000553437 GYPEP15421 78 aa7.03□□□□□ -1.28
CCDC88C-206ENST00000553437 TTC32Q5I0X7 151 aa7.03□□□□□ -1.28
CCDC88C-206ENST00000553437 ZNF506Q5JVG8 444 aa7.03□□□□□ -1.28
CCDC88C-206ENST00000553437 NEGR1Q7Z3B1 354 aa7.03□□□□□ -1.28
CCDC88C-206ENST00000553437 SMDT1Q9H4I9 107 aa7.03□□□□□ -1.28
CCDC88C-206ENST00000553437 SIVA1O15304 175 aa7.02□□□□□ -1.29
CCDC88C-206ENST00000553437 SH2D1AO60880 128 aa7.02□□□□□ -1.29
CCDC88C-206ENST00000553437 SRIP30626 198 aa7.02□□□□□ -1.29
CCDC88C-206ENST00000553437 AKR1C3P42330 323 aa7.02□□□□□ -1.29
CCDC88C-206ENST00000553437 UBE2G1P62253 170 aa7.02□□□□□ -1.29
CCDC88C-206ENST00000553437 CCL20P78556 96 aa7.02□□□□□ -1.29
CCDC88C-206ENST00000553437 ZNF674Q2M3X9 581 aa7.02□□□□□ -1.29
CCDC88C-206ENST00000553437 DNLZQ5SXM8 178 aa7.02□□□□□ -1.29
CCDC88C-206ENST00000553437 LRP1BQ9NZR2 4599 aa7.01□□□□□ -1.29
CCDC88C-206ENST00000553437 TRAV1-1A0A0B4J248 108 aa7.01□□□□□ -1.29
CCDC88C-206ENST00000553437 SCO2A0A1W2PP80 73 aa7.01□□□□□ -1.29
CCDC88C-206ENST00000553437 B4DEV8 164 aa7.01□□□□□ -1.29
CCDC88C-206ENST00000553437 CIDEAO60543 219 aa7.01□□□□□ -1.29
CCDC88C-206ENST00000553437 BTF3P20290 206 aaKnown RBP7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms