RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 A0A1B0GXF2 115 aa10.43□□□□□ -0.74
USP40-208ENST00000450966 CEP250Q9BV73 2442 aa10.43□□□□□ -0.74
USP40-208ENST00000450966 BAALCQ8WXS3 180 aa10.43□□□□□ -0.74
USP40-208ENST00000450966 GAFA1Q96PS6 74 aa10.43□□□□□ -0.74
USP40-208ENST00000450966 LINC00205P59089 165 aa10.43□□□□□ -0.74
USP40-208ENST00000450966 SS18Q15532 418 aa10.43□□□□□ -0.74
USP40-208ENST00000450966 IGFL4Q6B9Z1 124 aa10.42□□□□□ -0.74
USP40-208ENST00000450966 CFHR4Q92496 578 aa10.42□□□□□ -0.74
USP40-208ENST00000450966 AGPAT4-IT1Q9H0P7 198 aa10.42□□□□□ -0.74
USP40-208ENST00000450966 AKAP6Q13023 2319 aa10.42□□□□□ -0.74
USP40-208ENST00000450966 IGHV3-73A0A0B4J1V6 119 aa10.42□□□□□ -0.74
USP40-208ENST00000450966 PDE6GP18545 87 aa10.42□□□□□ -0.74
USP40-208ENST00000450966 INSL3P51460 131 aa10.42□□□□□ -0.74
USP40-208ENST00000450966 TMEM61Q8N0U2 210 aa10.42□□□□□ -0.74
USP40-208ENST00000450966 VWA8A3KMH1 1905 aa10.42□□□□□ -0.74
USP40-208ENST00000450966 IGHV1-69P01742 117 aa10.42□□□□□ -0.74
USP40-208ENST00000450966 TOMM6Q96B49 74 aa10.42□□□□□ -0.74
USP40-208ENST00000450966 SIGLEC9Q9Y336 463 aa10.42□□□□□ -0.74
USP40-208ENST00000450966 USP17L23D6RBM5 183 aa10.41□□□□□ -0.74
USP40-208ENST00000450966 MRPS12O15235 138 aaKnown RBP10.41□□□□□ -0.74
USP40-208ENST00000450966 Q9H8V8 135 aa10.41□□□□□ -0.74
USP40-208ENST00000450966 TP73-AS1Q9UF72 201 aa10.41□□□□□ -0.74
USP40-208ENST00000450966 C11orf1Q9H5F2 150 aa10.41□□□□□ -0.74
USP40-208ENST00000450966 CNOT1A5YKK6 2376 aaKnown RBP10.4□□□□□ -0.74
USP40-208ENST00000450966 TRBV30A0A0K0K1B3 111 aa10.39□□□□□ -0.75
USP40-208ENST00000450966 COL8A2P25067 703 aa10.39□□□□□ -0.75
USP40-208ENST00000450966 YLPM1P49750 1951 aaKnown RBP10.39□□□□□ -0.75
USP40-208ENST00000450966 DEFB113Q30KQ7 82 aa10.39□□□□□ -0.75
USP40-208ENST00000450966 RHPN1-AS1Q9BWJ2 59 aa10.39□□□□□ -0.75
USP40-208ENST00000450966 LINC01619G3V211 115 aa10.39□□□□□ -0.75
USP40-208ENST00000450966 PRORYQ9H606 182 aa10.39□□□□□ -0.75
USP40-208ENST00000450966 PRO3102Q9H379 93 aa10.39□□□□□ -0.75
USP40-208ENST00000450966 DAZ1Q9NQZ3 744 aaKnown RBP10.39□□□□□ -0.75
USP40-208ENST00000450966 RALGAPA1Q6GYQ0 2036 aa10.39□□□□□ -0.75
USP40-208ENST00000450966 COX7A2LO14548 114 aa10.38□□□□□ -0.75
USP40-208ENST00000450966 SAA4P35542 130 aa10.38□□□□□ -0.75
USP40-208ENST00000450966 KIAA1671Q9BY89 1806 aa10.38□□□□□ -0.75
USP40-208ENST00000450966 NUP210Q8TEM1 1887 aaPredicted RBP10.38□□□□□ -0.75
USP40-208ENST00000450966 IGKV1-16P04430 117 aa10.38□□□□□ -0.75
USP40-208ENST00000450966 TIMM17AQ99595 171 aa10.38□□□□□ -0.75
USP40-208ENST00000450966 IGHV3-53P01767 116 aa10.38□□□□□ -0.75
USP40-208ENST00000450966 MLST8Q9BVC4 326 aa10.38□□□□□ -0.75
USP40-208ENST00000450966 GATA1P15976 413 aaPredicted RBP10.38□□□□□ -0.75
USP40-208ENST00000450966 LOXL1Q08397 574 aaPredicted RBP10.38□□□□□ -0.75
USP40-208ENST00000450966 UBE2E2Q96LR5 201 aa10.37□□□□□ -0.75
USP40-208ENST00000450966 TMEM256-PLSCR3K7ERE1 68 aa10.37□□□□□ -0.75
USP40-208ENST00000450966 VPREB1P12018 145 aa10.37□□□□□ -0.75
USP40-208ENST00000450966 DAZ2Q13117 558 aaKnown RBP10.37□□□□□ -0.75
USP40-208ENST00000450966 DAZAP2Q15038 168 aaPredicted RBP10.37□□□□□ -0.75
USP40-208ENST00000450966 DAZ4Q86SG3 579 aaKnown RBP10.37□□□□□ -0.75
USP40-208ENST00000450966 C14orf132Q9NPU4 83 aa10.37□□□□□ -0.75
USP40-208ENST00000450966 DAZ3Q9NR90 486 aaKnown RBP10.37□□□□□ -0.75
USP40-208ENST00000450966 SDK2Q58EX2 2172 aa10.37□□□□□ -0.75
USP40-208ENST00000450966 PRB1P04280 392 aa10.37□□□□□ -0.75
USP40-208ENST00000450966 NREPQ16612 68 aa10.37□□□□□ -0.75
USP40-208ENST00000450966 NXPH4O95158 308 aa10.37□□□□□ -0.75
USP40-208ENST00000450966 MYLKQ15746 1914 aa10.36□□□□□ -0.75
USP40-208ENST00000450966 TRBV6-1A0A0K0K1D8 114 aa10.36□□□□□ -0.75
USP40-208ENST00000450966 BLCAPP62952 87 aa10.36□□□□□ -0.75
USP40-208ENST00000450966 PMAIP1Q13794 54 aa10.36□□□□□ -0.75
USP40-208ENST00000450966 PROP1O75360 226 aa10.36□□□□□ -0.75
USP40-208ENST00000450966 IGLV1-44P01699 117 aa10.36□□□□□ -0.75
USP40-208ENST00000450966 IGKV1D-17A0A075B6S4 117 aa10.36□□□□□ -0.75
USP40-208ENST00000450966 OPRPNQ99935 248 aaPredicted RBP10.36□□□□□ -0.75
USP40-208ENST00000450966 SND1-IT1Q9HBX3 110 aa10.36□□□□□ -0.75
USP40-208ENST00000450966 PTPRDP23468 1912 aa10.36□□□□□ -0.75
USP40-208ENST00000450966 RPS28P62857 69 aaKnown RBP10.35□□□□□ -0.75
USP40-208ENST00000450966 LOC107984640A0A0U1RRK4 108 aa10.35□□□□□ -0.75
USP40-208ENST00000450966 LYPD2Q6UXB3 125 aa10.35□□□□□ -0.75
USP40-208ENST00000450966 DOPEY2Q9Y3R5 2298 aa10.35□□□□□ -0.75
USP40-208ENST00000450966 OVOL3O00110 214 aa10.35□□□□□ -0.75
USP40-208ENST00000450966 LECT2O14960 151 aa10.35□□□□□ -0.75
USP40-208ENST00000450966 PRB2P02812 416 aaPredicted RBP10.35□□□□□ -0.75
USP40-208ENST00000450966 C19orf71A6NCJ1 209 aa10.34□□□□□ -0.75
USP40-208ENST00000450966 TCF20Q9UGU0 1960 aaKnown RBP10.34□□□□□ -0.75
USP40-208ENST00000450966 TSC2P49815 1807 aa10.34□□□□□ -0.75
USP40-208ENST00000450966 DEFB130BP0DP73 79 aa10.34□□□□□ -0.75
USP40-208ENST00000450966 DEFB130AP0DP74 79 aa10.34□□□□□ -0.75
USP40-208ENST00000450966 APOC4P55056 127 aa10.34□□□□□ -0.75
USP40-208ENST00000450966 H3BUA1 57 aa10.34□□□□□ -0.75
USP40-208ENST00000450966 UBE2BP63146 152 aa10.34□□□□□ -0.75
USP40-208ENST00000450966 FAM110DQ8TAY7 271 aaPredicted RBP10.34□□□□□ -0.75
USP40-208ENST00000450966 LENEPQ9Y5L5 61 aa10.34□□□□□ -0.75
USP40-208ENST00000450966 FAM215AQ9Y5M1 114 aa10.34□□□□□ -0.75
USP40-208ENST00000450966 SPTBN2O15020 2390 aa10.34□□□□□ -0.75
USP40-208ENST00000450966 IGLV3-1P01715 115 aa10.33□□□□□ -0.76
USP40-208ENST00000450966 MIAQ16674 131 aa10.33□□□□□ -0.76
USP40-208ENST00000450966 DEFB131AP59861 70 aa10.33□□□□□ -0.76
USP40-208ENST00000450966 Q8N976 141 aa10.33□□□□□ -0.76
USP40-208ENST00000450966 RNF138Q8WVD3 245 aa10.33□□□□□ -0.76
USP40-208ENST00000450966 IGLV3-9A0A075B6K5 115 aa10.33□□□□□ -0.76
USP40-208ENST00000450966 LY6HO94772 140 aa10.33□□□□□ -0.76
USP40-208ENST00000450966 LINC00311Q8N616 119 aa10.33□□□□□ -0.76
USP40-208ENST00000450966 DAND5Q8N907 189 aa10.33□□□□□ -0.76
USP40-208ENST00000450966 A0A0J9YXV3 536 aa10.32□□□□□ -0.76
USP40-208ENST00000450966 IGHV3-33P01772 117 aa10.32□□□□□ -0.76
USP40-208ENST00000450966 GDF5OSQ5U4N7 250 aa10.32□□□□□ -0.76
USP40-208ENST00000450966 KAAG1Q9UBP8 84 aa10.32□□□□□ -0.76
USP40-208ENST00000450966 ACACAQ13085 2346 aa10.32□□□□□ -0.76
USP40-208ENST00000450966 GP9P14770 177 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms