RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 V9GYV3 84 aa7.3□□□□□ -1.24
CD44-207ENST00000425428 X6R8D5 127 aa7.3□□□□□ -1.24
CD44-207ENST00000425428 DNAH3Q8TD57 4116 aa7.29□□□□□ -1.24
CD44-207ENST00000425428 TRGV2A0A075B6R0 118 aa7.29□□□□□ -1.24
CD44-207ENST00000425428 TRGV1A0A0A0MS02 117 aa7.29□□□□□ -1.24
CD44-207ENST00000425428 CXorf65A6NEN9 183 aa7.29□□□□□ -1.24
CD44-207ENST00000425428 HIGD1CA8MV81 97 aa7.29□□□□□ -1.24
CD44-207ENST00000425428 OR5AL1P0C617 328 aa7.29□□□□□ -1.24
CD44-207ENST00000425428 AZU1P20160 251 aa7.29□□□□□ -1.24
CD44-207ENST00000425428 DAZ2Q13117 558 aaKnown RBP7.29□□□□□ -1.24
CD44-207ENST00000425428 RIGQ13278 110 aa7.29□□□□□ -1.24
CD44-207ENST00000425428 ZNF876PQ49A33 203 aa7.29□□□□□ -1.24
CD44-207ENST00000425428 Q6ZQT7 251 aa7.29□□□□□ -1.24
CD44-207ENST00000425428 C11orf68Q9H3H3 251 aaKnown RBP7.29□□□□□ -1.24
CD44-207ENST00000425428 MDFICQ9P1T7 246 aa7.29□□□□□ -1.24
CD44-207ENST00000425428 A0A1B0GW15 77 aa7.28□□□□□ -1.24
CD44-207ENST00000425428 M0R381 172 aa7.28□□□□□ -1.24
CD44-207ENST00000425428 ATP6V1G1O75348 118 aa7.28□□□□□ -1.24
CD44-207ENST00000425428 TRGC1P0CF51 173 aa7.28□□□□□ -1.24
CD44-207ENST00000425428 GZMBP10144 247 aa7.28□□□□□ -1.24
CD44-207ENST00000425428 WDR73Q6P4I2 378 aa7.28□□□□□ -1.24
CD44-207ENST00000425428 PGLYRP4Q96LB8 373 aa7.28□□□□□ -1.24
CD44-207ENST00000425428 A0A1B0GUT8 65 aa7.28□□□□□ -1.24
CD44-207ENST00000425428 SMIM27A0A1W2PRY6 76 aa7.28□□□□□ -1.24
CD44-207ENST00000425428 SSTP61278 116 aa7.28□□□□□ -1.24
CD44-207ENST00000425428 DAD1P61803 113 aa7.28□□□□□ -1.24
CD44-207ENST00000425428 TWIST1Q15672 202 aa7.28□□□□□ -1.24
CD44-207ENST00000425428 LYZL1Q6UWQ5 148 aa7.28□□□□□ -1.24
CD44-207ENST00000425428 Q8NAQ8 132 aa7.28□□□□□ -1.24
CD44-207ENST00000425428 U3KQK5 164 aa7.28□□□□□ -1.24
CD44-207ENST00000425428 TRAV9-1A0A075B6T8 112 aa7.27□□□□□ -1.25
CD44-207ENST00000425428 A8MWV9 139 aa7.27□□□□□ -1.25
CD44-207ENST00000425428 DEFB4AO15263 64 aa7.27□□□□□ -1.25
CD44-207ENST00000425428 SNAI2O43623 268 aa7.27□□□□□ -1.25
CD44-207ENST00000425428 CIDEAO60543 219 aa7.27□□□□□ -1.25
CD44-207ENST00000425428 RNASE3P12724 160 aaKnown RBP7.27□□□□□ -1.25
CD44-207ENST00000425428 FOXA3P55318 350 aaPredicted RBP7.27□□□□□ -1.25
CD44-207ENST00000425428 PIK3CD-AS1Q5SR53 167 aa7.27□□□□□ -1.25
CD44-207ENST00000425428 FAM222AQ5U5X8 452 aa7.27□□□□□ -1.25
CD44-207ENST00000425428 IL17DQ8TAD2 202 aa7.27□□□□□ -1.25
CD44-207ENST00000425428 C11orf45Q8TAV5 145 aa7.27□□□□□ -1.25
CD44-207ENST00000425428 PTH2Q96A98 100 aa7.27□□□□□ -1.25
CD44-207ENST00000425428 C9orf85Q96MD7 179 aa7.27□□□□□ -1.25
CD44-207ENST00000425428 AP1S3Q96PC3 154 aa7.27□□□□□ -1.25
CD44-207ENST00000425428 SMCO4Q9NRQ5 59 aa7.27□□□□□ -1.25
CD44-207ENST00000425428 A0A0J9YWU9 116 aa7.26□□□□□ -1.25
CD44-207ENST00000425428 PRM2P04554 102 aa7.26□□□□□ -1.25
CD44-207ENST00000425428 IGLC6P0CF74 106 aa7.26□□□□□ -1.25
CD44-207ENST00000425428 DEFB130BP0DP73 79 aa7.26□□□□□ -1.25
CD44-207ENST00000425428 DEFB130AP0DP74 79 aa7.26□□□□□ -1.25
CD44-207ENST00000425428 C11orf72Q8NBR9 251 aa7.26□□□□□ -1.25
CD44-207ENST00000425428 GAGE12BA1L429 117 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 SPINK4O60575 86 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 GAGE7O76087 117 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 GAGE12FP0CL80 117 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 GAGE12GP0CL81 117 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 GAGE12IP0CL82 117 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 CTRLP40313 264 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 COX19Q49B96 90 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 ATP5L2Q7Z4Y8 100 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 NUP35Q8NFH5 326 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 OR4C5Q8NGB2 326 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 RASL10AQ92737 203 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 SSBP4Q9BWG4 385 aaPredicted RBP7.25□□□□□ -1.25
CD44-207ENST00000425428 MRPL16Q9NX20 251 aaKnown RBP7.25□□□□□ -1.25
CD44-207ENST00000425428 DKK2Q9UBU2 259 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 RHODO00212 210 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 NTF3P20783 257 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 OR10AG1Q8NH19 301 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 GTSF1Q8WW33 167 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 SCRT2Q9NQ03 307 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 URGCP-MRPS24S4R325 110 aa7.25□□□□□ -1.25
CD44-207ENST00000425428 NBEAL2Q6ZNJ1 2754 aa7.24□□□□□ -1.25
CD44-207ENST00000425428 FAM3BP58499 235 aaPredicted RBP7.24□□□□□ -1.25
CD44-207ENST00000425428 RAB4BP61018 213 aa7.24□□□□□ -1.25
CD44-207ENST00000425428 HBBP68871 147 aa7.24□□□□□ -1.25
CD44-207ENST00000425428 MUC4Q99102 2169 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 TRAV4A0A0B4J268 109 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 TRGV4A0A0C4DH28 118 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 MUC21A0A0G2JKD1 596 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 MUC21A0A140T8X8 626 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 F5H697 171 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 ATP5G1P05496 136 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 CAMPP49913 170 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 SLAQ13239 276 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 DMRTA1Q5VZB9 504 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 MRPL54Q6P161 138 aaKnown RBP7.23□□□□□ -1.25
CD44-207ENST00000425428 RASL11AQ6T310 242 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 Q6ZTI0 123 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 IGHV4-4A0A075B6R2 117 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 FAM74A4Q5TZK3 123 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 CNFNQ9BYD5 112 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 DPH3P1Q9H4G8 78 aa7.23□□□□□ -1.25
CD44-207ENST00000425428 PLAC8L1A1L4L8 177 aa7.22□□□□□ -1.25
CD44-207ENST00000425428 H7C1H1 209 aa7.22□□□□□ -1.25
CD44-207ENST00000425428 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.22□□□□□ -1.25
CD44-207ENST00000425428 NXPH4O95158 308 aa7.21□□□□□ -1.25
CD44-207ENST00000425428 MGPP08493 103 aa7.21□□□□□ -1.25
CD44-207ENST00000425428 HTN3P15516 51 aa7.21□□□□□ -1.25
CD44-207ENST00000425428 ZNF56Q15929 161 aa7.21□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms