RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 LRRK2Q5S007 2527 aa15.6■□□□□ 0.09
CCDC88B-203ENST00000359902 UBR5O95071 2799 aaPredicted RBP15.59■□□□□ 0.09
CCDC88B-203ENST00000359902 VAMP3Q15836 100 aa15.59■□□□□ 0.09
CCDC88B-203ENST00000359902 MYOZ3Q8TDC0 251 aa15.59■□□□□ 0.09
CCDC88B-203ENST00000359902 ZNF702PQ9H963 129 aa15.59■□□□□ 0.09
CCDC88B-203ENST00000359902 PCP2Q8IVA1 136 aa15.59■□□□□ 0.09
CCDC88B-203ENST00000359902 ZNF688P0C7X2 276 aa15.58■□□□□ 0.08
CCDC88B-203ENST00000359902 NMUP48645 174 aa15.58■□□□□ 0.08
CCDC88B-203ENST00000359902 SUMO2P61956 95 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-203ENST00000359902 TMEM97Q5BJF2 176 aa15.58■□□□□ 0.08
CCDC88B-203ENST00000359902 RPL39LQ96EH5 51 aaKnown RBP15.58■□□□□ 0.08
CCDC88B-203ENST00000359902 C20orf78Q9BR46 151 aa15.58■□□□□ 0.08
CCDC88B-203ENST00000359902 CENPEQ02224 2701 aa15.58■□□□□ 0.08
CCDC88B-203ENST00000359902 NXPH4O95158 308 aa15.57■□□□□ 0.08
CCDC88B-203ENST00000359902 IGKCP01834 107 aa15.57■□□□□ 0.08
CCDC88B-203ENST00000359902 LGALS1P09382 135 aaKnown RBP15.57■□□□□ 0.08
CCDC88B-203ENST00000359902 SYNJ2BPP57105 145 aa15.57■□□□□ 0.08
CCDC88B-203ENST00000359902 FAM159AQ6UWV7 190 aa15.57■□□□□ 0.08
CCDC88B-203ENST00000359902 ELANEP08246 267 aa15.57■□□□□ 0.08
CCDC88B-203ENST00000359902 PSMG4Q5JS54 123 aa15.57■□□□□ 0.08
CCDC88B-203ENST00000359902 OR9G4Q8NGQ1 327 aa15.57■□□□□ 0.08
CCDC88B-203ENST00000359902 AP1S3Q96PC3 154 aa15.57■□□□□ 0.08
CCDC88B-203ENST00000359902 IGHV4OR15-8A0A075B7B6 117 aa15.56■□□□□ 0.08
CCDC88B-203ENST00000359902 A0A087WW49 117 aa15.56■□□□□ 0.08
CCDC88B-203ENST00000359902 SIVA1O15304 175 aa15.56■□□□□ 0.08
CCDC88B-203ENST00000359902 HOXA3O43365 443 aaPredicted RBP15.56■□□□□ 0.08
CCDC88B-203ENST00000359902 MGPP08493 103 aa15.56■□□□□ 0.08
CCDC88B-203ENST00000359902 RNF151Q2KHN1 245 aa15.56■□□□□ 0.08
CCDC88B-203ENST00000359902 BEX4Q9NWD9 120 aaPredicted RBP15.56■□□□□ 0.08
CCDC88B-203ENST00000359902 MUC4Q99102 2169 aa15.56■□□□□ 0.08
CCDC88B-203ENST00000359902 CR1P17927 2039 aa15.56■□□□□ 0.08
CCDC88B-203ENST00000359902 TRAV12-3A0A0B4J271 114 aa15.56■□□□□ 0.08
CCDC88B-203ENST00000359902 K7EQG2 157 aa15.56■□□□□ 0.08
CCDC88B-203ENST00000359902 DPM2O94777 84 aa15.56■□□□□ 0.08
CCDC88B-203ENST00000359902 LGALS9O00182 355 aa15.55■□□□□ 0.08
CCDC88B-203ENST00000359902 POM121L12Q8N7R1 296 aa15.55■□□□□ 0.08
CCDC88B-203ENST00000359902 DOPEY2Q9Y3R5 2298 aa15.55■□□□□ 0.08
CCDC88B-203ENST00000359902 A0A0J9YX75 114 aa15.55■□□□□ 0.08
CCDC88B-203ENST00000359902 C7orf71A4D174 169 aa15.55■□□□□ 0.08
CCDC88B-203ENST00000359902 DEFB113Q30KQ7 82 aa15.55■□□□□ 0.08
CCDC88B-203ENST00000359902 UBE2E2Q96LR5 201 aa15.55■□□□□ 0.08
CCDC88B-203ENST00000359902 KIF25-AS1Q9Y6Z4 181 aa15.55■□□□□ 0.08
CCDC88B-203ENST00000359902 IGKV2D-26A0A0A0MRZ7 120 aa15.54■□□□□ 0.08
CCDC88B-203ENST00000359902 LINC00315P59091 139 aa15.54■□□□□ 0.08
CCDC88B-203ENST00000359902 SNRPD3P62318 126 aaKnown RBP15.54■□□□□ 0.08
CCDC88B-203ENST00000359902 ORMDL2Q53FV1 153 aa15.54■□□□□ 0.08
CCDC88B-203ENST00000359902 ODF3Q96PU9 254 aa15.54■□□□□ 0.08
CCDC88B-203ENST00000359902 PTPN13Q12923 2485 aa15.54■□□□□ 0.08
CCDC88B-203ENST00000359902 ERASQ7Z444 233 aa15.54■□□□□ 0.08
CCDC88B-203ENST00000359902 DUX5Q96PT3 197 aa15.54■□□□□ 0.08
CCDC88B-203ENST00000359902 MRPL35Q9NZE8 188 aaKnown RBP15.54■□□□□ 0.08
CCDC88B-203ENST00000359902 MXRA5Q9NR99 2828 aa15.53■□□□□ 0.08
CCDC88B-203ENST00000359902 HOXD3P31249 432 aaPredicted RBP15.53■□□□□ 0.08
CCDC88B-203ENST00000359902 SEC11AP67812 179 aa15.53■□□□□ 0.08
CCDC88B-203ENST00000359902 Q5PR19 223 aa15.53■□□□□ 0.08
CCDC88B-203ENST00000359902 ADAMTSL5Q6ZMM2 481 aa15.53■□□□□ 0.08
CCDC88B-203ENST00000359902 A0A087WX48 190 aa15.52■□□□□ 0.08
CCDC88B-203ENST00000359902 CD7P09564 240 aa15.52■□□□□ 0.08
CCDC88B-203ENST00000359902 RNF152Q8N8N0 203 aa15.52■□□□□ 0.08
CCDC88B-203ENST00000359902 CBY3A6NI87 242 aa15.52■□□□□ 0.07
CCDC88B-203ENST00000359902 K7EMI3 77 aa15.52■□□□□ 0.07
CCDC88B-203ENST00000359902 TOMM6Q96B49 74 aa15.52■□□□□ 0.07
CCDC88B-203ENST00000359902 TMEM160Q9NX00 188 aa15.52■□□□□ 0.07
CCDC88B-203ENST00000359902 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP15.51■□□□□ 0.07
CCDC88B-203ENST00000359902 IGKV3-20P01619 116 aa15.51■□□□□ 0.07
CCDC88B-203ENST00000359902 GTSCR1Q86UQ5 136 aa15.51■□□□□ 0.07
CCDC88B-203ENST00000359902 PPP1R17O96001 155 aa15.51■□□□□ 0.07
CCDC88B-203ENST00000359902 HSD52Q0P140 79 aa15.51■□□□□ 0.07
CCDC88B-203ENST00000359902 ZC2HC1BQ5TFG8 222 aa15.51■□□□□ 0.07
CCDC88B-203ENST00000359902 JPT2Q9H910 190 aa15.51■□□□□ 0.07
CCDC88B-203ENST00000359902 LRRC75A-AS1Q8N1F1 130 aa15.5■□□□□ 0.07
CCDC88B-203ENST00000359902 TRAV12-2A0A075B6T6 113 aa15.5■□□□□ 0.07
CCDC88B-203ENST00000359902 VPS25Q9BRG1 176 aa15.5■□□□□ 0.07
CCDC88B-203ENST00000359902 SCGB3A1Q96QR1 104 aa15.49■□□□□ 0.07
CCDC88B-203ENST00000359902 TTTY13Q9BZ97 58 aa15.49■□□□□ 0.07
CCDC88B-203ENST00000359902 PRRC2AP48634 2157 aaKnown RBP15.49■□□□□ 0.07
CCDC88B-203ENST00000359902 CSTL1Q9H114 145 aa15.49■□□□□ 0.07
CCDC88B-203ENST00000359902 CST9LQ9H4G1 147 aa15.49■□□□□ 0.07
CCDC88B-203ENST00000359902 TRAV12-1A0A0B4J245 112 aa15.48■□□□□ 0.07
CCDC88B-203ENST00000359902 Q96MF0 132 aa15.48■□□□□ 0.07
CCDC88B-203ENST00000359902 NAV2Q8IVL1 2488 aa15.48■□□□□ 0.07
CCDC88B-203ENST00000359902 IGHV3-16A0A0C4DH30 117 aa15.48■□□□□ 0.07
CCDC88B-203ENST00000359902 OCIAD2Q56VL3 154 aa15.48■□□□□ 0.07
CCDC88B-203ENST00000359902 ABCA12Q86UK0 2595 aa15.47■□□□□ 0.07
CCDC88B-203ENST00000359902 C9orf85Q96MD7 179 aa15.47■□□□□ 0.07
CCDC88B-203ENST00000359902 MDFICQ9P1T7 246 aa15.47■□□□□ 0.07
CCDC88B-203ENST00000359902 SPINK13Q1W4C9 94 aa15.46■□□□□ 0.07
CCDC88B-203ENST00000359902 C2orf66Q6UXQ4 117 aa15.46■□□□□ 0.07
CCDC88B-203ENST00000359902 C18orf65Q6ZTR6 163 aa15.46■□□□□ 0.07
CCDC88B-203ENST00000359902 Q8N2B8 174 aa15.46■□□□□ 0.07
CCDC88B-203ENST00000359902 A0A087WWL8 130 aa15.46■□□□□ 0.07
CCDC88B-203ENST00000359902 H7C1H1 209 aa15.46■□□□□ 0.07
CCDC88B-203ENST00000359902 PLNP26678 52 aa15.46■□□□□ 0.07
CCDC88B-203ENST00000359902 TCTEX1D4Q5JR98 221 aa15.46■□□□□ 0.07
CCDC88B-203ENST00000359902 TEX15Q9BXT5 2789 aa15.46■□□□□ 0.07
CCDC88B-203ENST00000359902 AGRNO00468 2067 aa15.46■□□□□ 0.06
CCDC88B-203ENST00000359902 AMMECR1LQ6DCA0 310 aa15.45■□□□□ 0.06
CCDC88B-203ENST00000359902 SUMO4Q6EEV6 95 aa15.45■□□□□ 0.06
CCDC88B-203ENST00000359902 NEXN-AS1Q8NBZ9 246 aa15.45■□□□□ 0.06
CCDC88B-203ENST00000359902 HIGD1BQ9P298 99 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms