RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 TOMM6Q96B49 74 aa13.51□□□□□ -0.25
SYNPO-201ENST00000307662 FAM215AQ9Y5M1 114 aa13.51□□□□□ -0.25
SYNPO-201ENST00000307662 BAALCQ8WXS3 180 aa13.51□□□□□ -0.25
SYNPO-201ENST00000307662 ARFGEF3Q5TH69 2177 aa13.51□□□□□ -0.25
SYNPO-201ENST00000307662 NBASA2RRP1 2371 aa13.51□□□□□ -0.25
SYNPO-201ENST00000307662 TRAV26-1A0A087WT03 109 aa13.5□□□□□ -0.25
SYNPO-201ENST00000307662 TRBV10-2A0A0K0K1G8 114 aa13.5□□□□□ -0.25
SYNPO-201ENST00000307662 C2orf70A6NJV1 201 aa13.5□□□□□ -0.25
SYNPO-201ENST00000307662 ODF1Q14990 250 aa13.5□□□□□ -0.25
SYNPO-201ENST00000307662 hADV29S1A0JD25 119 aa13.5□□□□□ -0.25
SYNPO-201ENST00000307662 ANGP03950 147 aaKnown RBP13.5□□□□□ -0.25
SYNPO-201ENST00000307662 U3KQE9 123 aa13.5□□□□□ -0.25
SYNPO-201ENST00000307662 DOCK7Q96N67 2140 aa13.5□□□□□ -0.25
SYNPO-201ENST00000307662 IGLV2-14P01704 120 aa13.49□□□□□ -0.25
SYNPO-201ENST00000307662 HOXB4P17483 251 aaPredicted RBP13.49□□□□□ -0.25
SYNPO-201ENST00000307662 NPBQ8NG41 125 aa13.49□□□□□ -0.25
SYNPO-201ENST00000307662 DOCK10Q96BY6 2186 aa13.49□□□□□ -0.25
SYNPO-201ENST00000307662 IGKV3D-7A0A0C4DH55 119 aa13.49□□□□□ -0.25
SYNPO-201ENST00000307662 CTRLP40313 264 aa13.49□□□□□ -0.25
SYNPO-201ENST00000307662 IGLV11-55A0A075B6I3 123 aa13.49□□□□□ -0.25
SYNPO-201ENST00000307662 IGHG2P01859 326 aa13.49□□□□□ -0.25
SYNPO-201ENST00000307662 ELANEP08246 267 aa13.49□□□□□ -0.25
SYNPO-201ENST00000307662 XCL1P47992 114 aa13.49□□□□□ -0.25
SYNPO-201ENST00000307662 SPRNQ5BIV9 151 aa13.48□□□□□ -0.25
SYNPO-201ENST00000307662 CLPSL2Q6UWE3 100 aa13.48□□□□□ -0.25
SYNPO-201ENST00000307662 SPATA12Q7Z6I5 190 aa13.48□□□□□ -0.25
SYNPO-201ENST00000307662 C1orf43Q9BWL3 253 aa13.48□□□□□ -0.25
SYNPO-201ENST00000307662 TRBV6-1A0A0K0K1D8 114 aa13.48□□□□□ -0.25
SYNPO-201ENST00000307662 RITA1Q96K30 269 aa13.48□□□□□ -0.25
SYNPO-201ENST00000307662 SND1-IT1Q9HBX3 110 aa13.48□□□□□ -0.25
SYNPO-201ENST00000307662 KIAA1671Q9BY89 1806 aa13.48□□□□□ -0.25
SYNPO-201ENST00000307662 RNF223E7ERA6 249 aa13.48□□□□□ -0.25
SYNPO-201ENST00000307662 USF3Q68DE3 2245 aa13.47□□□□□ -0.25
SYNPO-201ENST00000307662 CACNA1HO95180 2353 aa13.47□□□□□ -0.25
SYNPO-201ENST00000307662 IGKV1OR2-108A0A075B7D4 117 aa13.47□□□□□ -0.25
SYNPO-201ENST00000307662 DOPEY2Q9Y3R5 2298 aa13.47□□□□□ -0.25
SYNPO-201ENST00000307662 H3BT86 120 aa13.47□□□□□ -0.25
SYNPO-201ENST00000307662 IGFBPL1Q8WX77 278 aa13.47□□□□□ -0.25
SYNPO-201ENST00000307662 NUP210Q8TEM1 1887 aaPredicted RBP13.47□□□□□ -0.25
SYNPO-201ENST00000307662 CTSGP08311 255 aa13.47□□□□□ -0.25
SYNPO-201ENST00000307662 PRSS33Q8NF86 280 aa13.47□□□□□ -0.25
SYNPO-201ENST00000307662 TRAV4A0A0B4J268 109 aa13.46□□□□□ -0.25
SYNPO-201ENST00000307662 WI2-2373I1.2A0A1W2PRP0 233 aa13.46□□□□□ -0.25
SYNPO-201ENST00000307662 C11orf86A6NJI1 115 aa13.46□□□□□ -0.25
SYNPO-201ENST00000307662 PIP4P1Q86T03 277 aa13.46□□□□□ -0.25
SYNPO-201ENST00000307662 C19orf71A6NCJ1 209 aa13.46□□□□□ -0.25
SYNPO-201ENST00000307662 TIMM17AQ99595 171 aa13.46□□□□□ -0.25
SYNPO-201ENST00000307662 CACNA1BQ00975 2339 aa13.46□□□□□ -0.26
SYNPO-201ENST00000307662 RPL39P62891 51 aaKnown RBP13.46□□□□□ -0.26
SYNPO-201ENST00000307662 CHD3Q12873 2000 aaKnown RBP13.46□□□□□ -0.26
SYNPO-201ENST00000307662 A0A096LPF7 62 aa13.45□□□□□ -0.26
SYNPO-201ENST00000307662 PIFOQ8TCI5 191 aa13.45□□□□□ -0.26
SYNPO-201ENST00000307662 LGALS9O00182 355 aa13.45□□□□□ -0.26
SYNPO-201ENST00000307662 BUB3O43684 328 aa13.45□□□□□ -0.26
SYNPO-201ENST00000307662 NOP10Q9NPE3 64 aaKnown RBP13.45□□□□□ -0.26
SYNPO-201ENST00000307662 SPTAN1Q13813 2472 aaKnown RBP13.45□□□□□ -0.26
SYNPO-201ENST00000307662 PSMB8P28062 276 aa13.45□□□□□ -0.26
SYNPO-201ENST00000307662 CADP27708 2225 aa13.45□□□□□ -0.26
SYNPO-201ENST00000307662 IGHV7-81A0A0B4J1V7 117 aa13.44□□□□□ -0.26
SYNPO-201ENST00000307662 NDUFC2O95298 119 aa13.44□□□□□ -0.26
SYNPO-201ENST00000307662 EML6Q6ZMW3 1958 aa13.44□□□□□ -0.26
SYNPO-201ENST00000307662 A0A1B0GXF2 115 aa13.44□□□□□ -0.26
SYNPO-201ENST00000307662 C16orf54Q6UWD8 224 aa13.43□□□□□ -0.26
SYNPO-201ENST00000307662 C5orf38Q86SI9 138 aa13.43□□□□□ -0.26
SYNPO-201ENST00000307662 PRAC2D3DTV9 90 aa13.43□□□□□ -0.26
SYNPO-201ENST00000307662 J3QLI3 93 aa13.43□□□□□ -0.26
SYNPO-201ENST00000307662 Q71RC1 249 aaPredicted RBP13.43□□□□□ -0.26
SYNPO-201ENST00000307662 PTH2Q96A98 100 aa13.43□□□□□ -0.26
SYNPO-201ENST00000307662 IGLV2-23P01705 113 aa13.43□□□□□ -0.26
SYNPO-201ENST00000307662 C9orf47Q6ZRZ4 202 aa13.43□□□□□ -0.26
SYNPO-201ENST00000307662 CLEC2BQ92478 149 aa13.42□□□□□ -0.26
SYNPO-201ENST00000307662 CENPVL3A0A0U1RRI6 287 aa13.42□□□□□ -0.26
SYNPO-201ENST00000307662 APOC4P55056 127 aa13.42□□□□□ -0.26
SYNPO-201ENST00000307662 MED14OSP0DP75 135 aa13.42□□□□□ -0.26
SYNPO-201ENST00000307662 DAND5Q8N907 189 aa13.42□□□□□ -0.26
SYNPO-201ENST00000307662 MAPK1IP1LQ8NDC0 245 aa13.42□□□□□ -0.26
SYNPO-201ENST00000307662 DENND4CQ5VZ89 1909 aa13.41□□□□□ -0.26
SYNPO-201ENST00000307662 NDUFA11Q86Y39 141 aa13.41□□□□□ -0.26
SYNPO-201ENST00000307662 DENND4AQ7Z401 1863 aa13.41□□□□□ -0.26
SYNPO-201ENST00000307662 COX7B2Q8TF08 81 aa13.41□□□□□ -0.26
SYNPO-201ENST00000307662 RNF152Q8N8N0 203 aa13.41□□□□□ -0.26
SYNPO-201ENST00000307662 TEX22C9J3V5 150 aa13.4□□□□□ -0.26
SYNPO-201ENST00000307662 C3orf56Q8N813 242 aa13.4□□□□□ -0.26
SYNPO-201ENST00000307662 DEFB121Q5J5C9 76 aa13.4□□□□□ -0.26
SYNPO-201ENST00000307662 OPRPNQ99935 248 aaPredicted RBP13.4□□□□□ -0.26
SYNPO-201ENST00000307662 SHANK1Q9Y566 2161 aa13.4□□□□□ -0.26
SYNPO-201ENST00000307662 Q6ZUT4 128 aa13.4□□□□□ -0.26
SYNPO-201ENST00000307662 ZNF503Q96F45 646 aa13.4□□□□□ -0.26
SYNPO-201ENST00000307662 MRPL36Q9P0J6 103 aaKnown RBP13.4□□□□□ -0.26
SYNPO-201ENST00000307662 K7EQD1 137 aa13.4□□□□□ -0.27
SYNPO-201ENST00000307662 IGFL2Q6UWQ7 119 aa13.39□□□□□ -0.27
SYNPO-201ENST00000307662 PLXNB3Q9ULL4 1909 aa13.39□□□□□ -0.27
SYNPO-201ENST00000307662 FUSP35637 526 aaKnown RBP eCLIP13.39□□□□□ -0.27
SYNPO-201ENST00000307662 DAZ2Q13117 558 aaKnown RBP13.39□□□□□ -0.27
SYNPO-201ENST00000307662 DAZ4Q86SG3 579 aaKnown RBP13.39□□□□□ -0.27
SYNPO-201ENST00000307662 ODF3L1Q8IXM7 274 aa13.39□□□□□ -0.27
SYNPO-201ENST00000307662 DEFB105AQ8NG35 78 aa13.39□□□□□ -0.27
SYNPO-201ENST00000307662 RNF183Q96D59 192 aa13.39□□□□□ -0.27
SYNPO-201ENST00000307662 DAZ3Q9NR90 486 aaKnown RBP13.39□□□□□ -0.27
SYNPO-201ENST00000307662 TCL1BO95988 128 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms