RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 CTSGP08311 255 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 FOXI2Q6ZQN5 318 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 PCP2Q8IVA1 136 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 BOD1L2Q8IYS8 172 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 C11orf1Q9H5F2 150 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 IGF2RP11717 2491 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 IGKV1OR2-108A0A075B7D4 117 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 K7ERJ3 54 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 SOCS3O14543 225 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 HERVK_113P63121 156 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 AMTNQ6UX39 209 aa8.41□□□□□ -1.06
CD44-201ENST00000263398 LINC01545Q5VT33 79 aa8.4□□□□□ -1.06
CD44-201ENST00000263398 ZNF48Q96MX3 618 aaPredicted RBP8.4□□□□□ -1.06
CD44-201ENST00000263398 KMT2EQ8IZD2 1858 aa8.4□□□□□ -1.06
CD44-201ENST00000263398 ADAMTS9Q9P2N4 1935 aa8.4□□□□□ -1.06
CD44-201ENST00000263398 ARHGAP21Q5T5U3 1957 aa8.4□□□□□ -1.06
CD44-201ENST00000263398 GATA1P15976 413 aaPredicted RBP8.4□□□□□ -1.06
CD44-201ENST00000263398 DAD1P61803 113 aa8.4□□□□□ -1.06
CD44-201ENST00000263398 Q96MF0 132 aa8.4□□□□□ -1.06
CD44-201ENST00000263398 NCOR2Q9Y618 2525 aa8.4□□□□□ -1.07
CD44-201ENST00000263398 BUB3O43684 328 aa8.4□□□□□ -1.07
CD44-201ENST00000263398 IGLV1-47P01700 117 aa8.39□□□□□ -1.07
CD44-201ENST00000263398 IGFBPL1Q8WX77 278 aa8.39□□□□□ -1.07
CD44-201ENST00000263398 RITA1Q96K30 269 aa8.39□□□□□ -1.07
CD44-201ENST00000263398 PLXNB1O43157 2135 aa8.39□□□□□ -1.07
CD44-201ENST00000263398 F5H768 121 aa8.39□□□□□ -1.07
CD44-201ENST00000263398 TDRG1Q3Y452 100 aa8.39□□□□□ -1.07
CD44-201ENST00000263398 PTPRSQ13332 1948 aa8.39□□□□□ -1.07
CD44-201ENST00000263398 GAGE6Q13070 117 aa8.39□□□□□ -1.07
CD44-201ENST00000263398 EDA2RQ9HAV5 297 aa8.39□□□□□ -1.07
CD44-201ENST00000263398 ZNF106Q9H2Y7 1883 aaKnown RBP8.39□□□□□ -1.07
CD44-201ENST00000263398 SORL1Q92673 2214 aa8.39□□□□□ -1.07
CD44-201ENST00000263398 GAGE12HA6NDE8 117 aa8.38□□□□□ -1.07
CD44-201ENST00000263398 ANKRD39Q53RE8 183 aa8.38□□□□□ -1.07
CD44-201ENST00000263398 LINC00173Q6ZV60 143 aa8.38□□□□□ -1.07
CD44-201ENST00000263398 MSRB1Q9NZV6 116 aa8.38□□□□□ -1.07
CD44-201ENST00000263398 SEM1Q6ZVN7 128 aa8.38□□□□□ -1.07
CD44-201ENST00000263398 GTSF1Q8WW33 167 aa8.38□□□□□ -1.07
CD44-201ENST00000263398 VPREB3Q9UKI3 123 aa8.38□□□□□ -1.07
CD44-201ENST00000263398 KIAA1549LQ6ZVL6 1849 aa8.38□□□□□ -1.07
CD44-201ENST00000263398 F8WEM9 126 aa8.38□□□□□ -1.07
CD44-201ENST00000263398 ZNF561-AS1K7EIQ3 104 aa8.38□□□□□ -1.07
CD44-201ENST00000263398 HOXD3P31249 432 aaPredicted RBP8.38□□□□□ -1.07
CD44-201ENST00000263398 DEFB112Q30KQ8 113 aa8.38□□□□□ -1.07
CD44-201ENST00000263398 ODF3L1Q8IXM7 274 aa8.38□□□□□ -1.07
CD44-201ENST00000263398 IGHV4-59P01825 116 aa8.37□□□□□ -1.07
CD44-201ENST00000263398 UTF1Q5T230 341 aa8.37□□□□□ -1.07
CD44-201ENST00000263398 Q6ZVH6 145 aa8.37□□□□□ -1.07
CD44-201ENST00000263398 UBE2DNLQ8IWF7 75 aa8.37□□□□□ -1.07
CD44-201ENST00000263398 Q8N9W7 124 aa8.37□□□□□ -1.07
CD44-201ENST00000263398 TRAV13-2A0A0B4J235 113 aa8.37□□□□□ -1.07
CD44-201ENST00000263398 CCL25O15444 150 aa8.37□□□□□ -1.07
CD44-201ENST00000263398 CRYGCP07315 174 aa8.37□□□□□ -1.07
CD44-201ENST00000263398 P0C879 139 aa8.37□□□□□ -1.07
CD44-201ENST00000263398 CFC1BP0CG36 223 aa8.37□□□□□ -1.07
CD44-201ENST00000263398 CFC1P0CG37 223 aa8.37□□□□□ -1.07
CD44-201ENST00000263398 TEX22C9J3V5 150 aa8.37□□□□□ -1.07
CD44-201ENST00000263398 IGLV2-23P01705 113 aa8.37□□□□□ -1.07
CD44-201ENST00000263398 NXPH4O95158 308 aa8.36□□□□□ -1.07
CD44-201ENST00000263398 MRPL36Q9P0J6 103 aaKnown RBP8.36□□□□□ -1.07
CD44-201ENST00000263398 MED12LQ86YW9 2145 aa8.36□□□□□ -1.07
CD44-201ENST00000263398 CARD19Q96LW7 228 aa8.36□□□□□ -1.07
CD44-201ENST00000263398 NCKAP5O14513 1909 aa8.36□□□□□ -1.07
CD44-201ENST00000263398 HIVEP2P31629 2446 aa8.36□□□□□ -1.07
CD44-201ENST00000263398 IGHV4-61A0A0C4DH41 118 aa8.36□□□□□ -1.07
CD44-201ENST00000263398 A0A1W2PNU3 283 aaPredicted RBP8.36□□□□□ -1.07
CD44-201ENST00000263398 WI2-2373I1.2A0A1W2PRP0 233 aa8.36□□□□□ -1.07
CD44-201ENST00000263398 RNASE13Q5GAN3 156 aaKnown RBP8.36□□□□□ -1.07
CD44-201ENST00000263398 C16orf54Q6UWD8 224 aa8.36□□□□□ -1.07
CD44-201ENST00000263398 SPANXDQ9BXN6 97 aa8.36□□□□□ -1.07
CD44-201ENST00000263398 CHD9Q3L8U1 2897 aa8.36□□□□□ -1.07
CD44-201ENST00000263398 E7EUB6 86 aa8.36□□□□□ -1.07
CD44-201ENST00000263398 SPRY2O43597 315 aa8.36□□□□□ -1.07
CD44-201ENST00000263398 MSMPQ1L6U9 139 aa8.36□□□□□ -1.07
CD44-201ENST00000263398 DEFB121Q5J5C9 76 aa8.36□□□□□ -1.07
CD44-201ENST00000263398 AJUBAQ96IF1 538 aa8.36□□□□□ -1.07
CD44-201ENST00000263398 RPL39LQ96EH5 51 aaKnown RBP8.35□□□□□ -1.07
CD44-201ENST00000263398 UBL5Q9BZL1 73 aa8.35□□□□□ -1.07
CD44-201ENST00000263398 U3KQE9 123 aa8.35□□□□□ -1.07
CD44-201ENST00000263398 PSCAO43653 123 aa8.35□□□□□ -1.07
CD44-201ENST00000263398 BLCAPP62952 87 aa8.35□□□□□ -1.07
CD44-201ENST00000263398 C9orf153Q5TBE3 101 aa8.35□□□□□ -1.07
CD44-201ENST00000263398 DENND4AQ7Z401 1863 aa8.35□□□□□ -1.07
CD44-201ENST00000263398 PROP1O75360 226 aa8.34□□□□□ -1.07
CD44-201ENST00000263398 NTN5Q8WTR8 489 aaPredicted RBP8.34□□□□□ -1.07
CD44-201ENST00000263398 SCRT2Q9NQ03 307 aa8.34□□□□□ -1.07
CD44-201ENST00000263398 MYO9AB2RTY4 2548 aa8.34□□□□□ -1.07
CD44-201ENST00000263398 C3orf56Q8N813 242 aa8.34□□□□□ -1.07
CD44-201ENST00000263398 APOC4P55056 127 aa8.34□□□□□ -1.07
CD44-201ENST00000263398 TRBV6-1A0A0K0K1D8 114 aa8.34□□□□□ -1.08
CD44-201ENST00000263398 FRMD6-AS1P0C7T7 363 aa8.33□□□□□ -1.08
CD44-201ENST00000263398 CGB3P0DN86 165 aa8.33□□□□□ -1.08
CD44-201ENST00000263398 CGB7P0DN87 165 aa8.33□□□□□ -1.08
CD44-201ENST00000263398 CTRLP40313 264 aa8.33□□□□□ -1.08
CD44-201ENST00000263398 PIEZO1Q92508 2521 aa8.33□□□□□ -1.08
CD44-201ENST00000263398 TLN1Q9Y490 2541 aaKnown RBP8.33□□□□□ -1.08
CD44-201ENST00000263398 IGLL5B9A064 214 aa8.33□□□□□ -1.08
CD44-201ENST00000263398 SUMO4Q6EEV6 95 aa8.33□□□□□ -1.08
CD44-201ENST00000263398 ZFP2Q6ZN57 461 aa8.33□□□□□ -1.08
CD44-201ENST00000263398 PRAC2D3DTV9 90 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 269 ms