RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 IGHV4-30-2A0A087WSY4 118 aa9.84□□□□□ -0.83
CCDC88A-214ENST00000621814 GNRH2O43555 120 aa9.84□□□□□ -0.83
CCDC88A-214ENST00000621814 GCSHP23434 173 aa9.84□□□□□ -0.83
CCDC88A-214ENST00000621814 ODF1Q14990 250 aa9.84□□□□□ -0.83
CCDC88A-214ENST00000621814 ZC2HC1BQ5TFG8 222 aa9.84□□□□□ -0.83
CCDC88A-214ENST00000621814 C9orf47Q6ZRZ4 202 aa9.84□□□□□ -0.83
CCDC88A-214ENST00000621814 OR1N2Q8NGR9 330 aa9.84□□□□□ -0.83
CCDC88A-214ENST00000621814 SRSF2Q01130 221 aaKnown RBP9.84□□□□□ -0.83
CCDC88A-214ENST00000621814 Q8N8P6 123 aa9.84□□□□□ -0.83
CCDC88A-214ENST00000621814 MYOZ3Q8TDC0 251 aa9.84□□□□□ -0.83
CCDC88A-214ENST00000621814 PSMG3-AS1Q96PY0 264 aa9.84□□□□□ -0.83
CCDC88A-214ENST00000621814 PEF1Q9UBV8 284 aaKnown RBP9.84□□□□□ -0.83
CCDC88A-214ENST00000621814 FAM223BA6NKX1 122 aa9.83□□□□□ -0.84
CCDC88A-214ENST00000621814 IGKCP01834 107 aa9.83□□□□□ -0.84
CCDC88A-214ENST00000621814 FAM223AQ8IWN6 122 aa9.83□□□□□ -0.84
CCDC88A-214ENST00000621814 PHLDA3Q9Y5J5 127 aa9.83□□□□□ -0.84
CCDC88A-214ENST00000621814 DOPEY2Q9Y3R5 2298 aa9.83□□□□□ -0.84
CCDC88A-214ENST00000621814 GAGE10A6NGK3 116 aa9.83□□□□□ -0.84
CCDC88A-214ENST00000621814 LAGE3Q14657 143 aa9.83□□□□□ -0.84
CCDC88A-214ENST00000621814 GPHB5Q86YW7 130 aa9.83□□□□□ -0.84
CCDC88A-214ENST00000621814 U3KQE9 123 aa9.83□□□□□ -0.84
CCDC88A-214ENST00000621814 PCP4P48539 62 aa9.82□□□□□ -0.84
CCDC88A-214ENST00000621814 ANXA2RQ3ZCQ2 193 aa9.82□□□□□ -0.84
CCDC88A-214ENST00000621814 CLEC2AQ6UVW9 174 aa9.82□□□□□ -0.84
CCDC88A-214ENST00000621814 NPFFR1Q9GZQ6 430 aa9.82□□□□□ -0.84
CCDC88A-214ENST00000621814 MRPL35Q9NZE8 188 aaKnown RBP9.82□□□□□ -0.84
CCDC88A-214ENST00000621814 CUBNO60494 3623 aa9.82□□□□□ -0.84
CCDC88A-214ENST00000621814 POLQO75417 2590 aa9.82□□□□□ -0.84
CCDC88A-214ENST00000621814 IGKV3-20P01619 116 aa9.82□□□□□ -0.84
CCDC88A-214ENST00000621814 C9orf139Q6ZV77 190 aa9.82□□□□□ -0.84
CCDC88A-214ENST00000621814 NRACQ8N912 160 aa9.82□□□□□ -0.84
CCDC88A-214ENST00000621814 MAPK1IP1LQ8NDC0 245 aa9.82□□□□□ -0.84
CCDC88A-214ENST00000621814 RPL39LQ96EH5 51 aaKnown RBP9.82□□□□□ -0.84
CCDC88A-214ENST00000621814 RHPN1-AS1Q9BWJ2 59 aa9.82□□□□□ -0.84
CCDC88A-214ENST00000621814 GAGE12BA1L429 117 aa9.81□□□□□ -0.84
CCDC88A-214ENST00000621814 A6NDN8 102 aa9.81□□□□□ -0.84
CCDC88A-214ENST00000621814 SFTPCP11686 197 aa9.81□□□□□ -0.84
CCDC88A-214ENST00000621814 HHLA3Q9XRX5 114 aa9.81□□□□□ -0.84
CCDC88A-214ENST00000621814 SEC11AP67812 179 aa9.81□□□□□ -0.84
CCDC88A-214ENST00000621814 NEGR1Q7Z3B1 354 aa9.81□□□□□ -0.84
CCDC88A-214ENST00000621814 USP9YO00507 2555 aaPredicted RBP9.81□□□□□ -0.84
CCDC88A-214ENST00000621814 AVPP01185 164 aa9.8□□□□□ -0.84
CCDC88A-214ENST00000621814 SRSF1Q07955 248 aaKnown RBP eCLIP9.8□□□□□ -0.84
CCDC88A-214ENST00000621814 HSD52Q0P140 79 aa9.8□□□□□ -0.84
CCDC88A-214ENST00000621814 ADAMTSL5Q6ZMM2 481 aa9.8□□□□□ -0.84
CCDC88A-214ENST00000621814 ZFAND2AQ8N6M9 145 aa9.8□□□□□ -0.84
CCDC88A-214ENST00000621814 IGLV2-18A0A075B6J9 118 aa9.8□□□□□ -0.84
CCDC88A-214ENST00000621814 NDUFA4O00483 81 aa9.8□□□□□ -0.84
CCDC88A-214ENST00000621814 DPM2O94777 84 aa9.8□□□□□ -0.84
CCDC88A-214ENST00000621814 ASIPP42127 132 aa9.8□□□□□ -0.84
CCDC88A-214ENST00000621814 C10orf99Q6UWK7 81 aa9.8□□□□□ -0.84
CCDC88A-214ENST00000621814 OR9G4Q8NGQ1 327 aa9.8□□□□□ -0.84
CCDC88A-214ENST00000621814 CST9LQ9H4G1 147 aa9.8□□□□□ -0.84
CCDC88A-214ENST00000621814 PRORYQ9H606 182 aa9.8□□□□□ -0.84
CCDC88A-214ENST00000621814 MYO18BQ8IUG5 2567 aa9.8□□□□□ -0.84
CCDC88A-214ENST00000621814 CACNA1AO00555 2505 aa9.79□□□□□ -0.84
CCDC88A-214ENST00000621814 TRAV21A0A0B4J279 112 aa9.79□□□□□ -0.84
CCDC88A-214ENST00000621814 A0A0G2JLM5 398 aa9.79□□□□□ -0.84
CCDC88A-214ENST00000621814 K7ERJ3 54 aa9.79□□□□□ -0.84
CCDC88A-214ENST00000621814 RBX1P62877 108 aa9.79□□□□□ -0.84
CCDC88A-214ENST00000621814 C10orf105Q8TEF2 133 aa9.79□□□□□ -0.84
CCDC88A-214ENST00000621814 DPF1Q92782 380 aa9.79□□□□□ -0.84
CCDC88A-214ENST00000621814 JMJD8Q96S16 334 aa9.79□□□□□ -0.84
CCDC88A-214ENST00000621814 MRPL53Q96EL3 112 aaKnown RBP9.79□□□□□ -0.84
CCDC88A-214ENST00000621814 LINC00477Q96M19 166 aa9.79□□□□□ -0.84
CCDC88A-214ENST00000621814 SPOCK3Q9BQ16 436 aa9.79□□□□□ -0.84
CCDC88A-214ENST00000621814 USP9XQ93008 2570 aaPredicted RBP9.78□□□□□ -0.84
CCDC88A-214ENST00000621814 CREBBPQ92793 2442 aa9.78□□□□□ -0.84
CCDC88A-214ENST00000621814 ZANQ9Y493 2812 aa9.78□□□□□ -0.84
CCDC88A-214ENST00000621814 C19orf54Q5BKX5 351 aa9.78□□□□□ -0.84
CCDC88A-214ENST00000621814 VPS25Q9BRG1 176 aa9.78□□□□□ -0.84
CCDC88A-214ENST00000621814 ATP5LO75964 103 aa9.78□□□□□ -0.84
CCDC88A-214ENST00000621814 IGHG2P01859 326 aa9.78□□□□□ -0.84
CCDC88A-214ENST00000621814 FXYD2P54710 66 aa9.78□□□□□ -0.84
CCDC88A-214ENST00000621814 SCGB3A1Q96QR1 104 aa9.78□□□□□ -0.84
CCDC88A-214ENST00000621814 C9orf118A6NHY6 69 aa9.77□□□□□ -0.84
CCDC88A-214ENST00000621814 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.77□□□□□ -0.84
CCDC88A-214ENST00000621814 OVOL1O14753 267 aa9.77□□□□□ -0.84
CCDC88A-214ENST00000621814 MSMBP08118 114 aa9.77□□□□□ -0.84
CCDC88A-214ENST00000621814 KLK9Q2XQG4 91 aa9.77□□□□□ -0.84
CCDC88A-214ENST00000621814 CHAC1Q9BUX1 264 aa9.77□□□□□ -0.84
CCDC88A-214ENST00000621814 MEGF9Q9H1U4 602 aa9.77□□□□□ -0.84
CCDC88A-214ENST00000621814 JPT2Q9H910 190 aa9.77□□□□□ -0.84
CCDC88A-214ENST00000621814 KLK9Q9UKQ9 250 aa9.77□□□□□ -0.84
CCDC88A-214ENST00000621814 SORL1Q92673 2214 aa9.77□□□□□ -0.85
CCDC88A-214ENST00000621814 MAPKAPK5-AS1Q8N8E1 139 aa9.77□□□□□ -0.85
CCDC88A-214ENST00000621814 PPP1R14DQ9NXH3 145 aa9.77□□□□□ -0.85
CCDC88A-214ENST00000621814 FAM208BQ5VWN6 2430 aa9.77□□□□□ -0.85
CCDC88A-214ENST00000621814 TRBV25-1A0A075B6N4 114 aa9.76□□□□□ -0.85
CCDC88A-214ENST00000621814 F5H697 171 aa9.76□□□□□ -0.85
CCDC88A-214ENST00000621814 H3BRM9 83 aa9.76□□□□□ -0.85
CCDC88A-214ENST00000621814 SUMO2P61956 95 aaKnown RBP9.76□□□□□ -0.85
CCDC88A-214ENST00000621814 RASL10AQ92737 203 aa9.76□□□□□ -0.85
CCDC88A-214ENST00000621814 USMG5Q96IX5 58 aa9.76□□□□□ -0.85
CCDC88A-214ENST00000621814 DUX5Q96PT3 197 aa9.76□□□□□ -0.85
CCDC88A-214ENST00000621814 SMIM2Q9BVW6 85 aa9.76□□□□□ -0.85
CCDC88A-214ENST00000621814 PIEZO1Q92508 2521 aa9.76□□□□□ -0.85
CCDC88A-214ENST00000621814 A0A087WWL8 130 aa9.76□□□□□ -0.85
CCDC88A-214ENST00000621814 TRAV12-3A0A0B4J271 114 aa9.76□□□□□ -0.85
CCDC88A-214ENST00000621814 OCIAD2Q56VL3 154 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 144.8 ms