RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 METTL26Q96S19 204 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 TMEM222Q9H0R3 208 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 KCNIP2Q9NS61 270 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 LY96Q9Y6Y9 160 aa4.83□□□□□ -1.64
VPS53-213ENST00000572334 CTXND1A0A1B0GTU2 59 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 A0A1W2PS18 150 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 C11orf94C9JXX5 98 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 FAM90A26D6RGX4 464 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 H3BMM0 161 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 BUB3O43684 328 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 OR7C2O60412 319 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 OR10J4P0C629 311 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 SUB1P53999 127 aaKnown RBP eCLIP4.82□□□□□ -1.64
VPS53-213ENST00000572334 DEFB1P60022 68 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 RPL23P62829 140 aaKnown RBP4.82□□□□□ -1.64
VPS53-213ENST00000572334 GDF5OSQ5U4N7 250 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 RASL11AQ6T310 242 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 OR5A1Q8NGJ0 315 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 SSBP4Q9BWG4 385 aaPredicted RBP4.82□□□□□ -1.64
VPS53-213ENST00000572334 GNB1LQ9BYB4 327 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 SH3BGRL3Q9H299 93 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 PRR13Q9NZ81 148 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 TMEM56-RWDD3S4R434 201 aa4.82□□□□□ -1.64
VPS53-213ENST00000572334 HSPG2P98160 4391 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 IGKV1D-37A0A075B6S9 117 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 TRAV10A0A0B4J240 114 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 A0A1B0GV50 99 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 A6NDN8 102 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 HELTA6NFD8 242 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 SOCS3O14543 225 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 RTL8CO15255 209 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 IGLC2P0DOY2 106 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 IGLC3P0DOY3 106 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 TSPOP30536 169 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 RHOBP62745 196 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 SEC11AP67812 179 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 NMSQ5H8A3 153 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 SAMD13Q5VXD3 122 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 NPIPB3Q92617 1050 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 SFRP2Q96HF1 295 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 C17orf77Q96MU5 243 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 ST20Q9HBF5 79 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.81□□□□□ -1.64
VPS53-213ENST00000572334 CACNG5Q9UF02 275 aa4.81□□□□□ -1.64
VPS53-213ENST00000572334 TRAV9-2A0A087WT02 112 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 SSSCA1O60232 199 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 HLA-DQA1P01909 254 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 IL4P05112 153 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 STAG3L3P0CL85 134 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 PSG1P11464 419 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 HLA-DRB4P13762 266 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 PMCHP20382 165 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 CDC34P49427 236 aaPredicted RBP4.8□□□□□ -1.64
VPS53-213ENST00000572334 KRTDAPP60985 99 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 ID3Q02535 119 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 TMEM144Q7Z5S9 345 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 KCNS1Q96KK3 526 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 UHRF2Q96PU4 802 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 WDR61Q9GZS3 305 aaKnown RBP4.8□□□□□ -1.64
VPS53-213ENST00000572334 PARLQ9H300 379 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 VCX2Q9H322 139 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 ENY2Q9NPA8 101 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 NRN1Q9NPD7 142 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 HEYLQ9NQ87 328 aaPredicted RBP4.8□□□□□ -1.64
VPS53-213ENST00000572334 XCL2Q9UBD3 114 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 HLA-DRB4X5D2U9 266 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 LRP1BQ9NZR2 4599 aa4.8□□□□□ -1.64
VPS53-213ENST00000572334 DEFB131BA0A096LNP1 70 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 GAGE12BA1L429 117 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 FAM24AA6NFZ4 105 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 GAGE10A6NGK3 116 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 MPDU1O75352 247 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 HYPMO75409 117 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 GPX1P07203 203 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 LINC00869P0C866 280 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 NPY1RP25929 384 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 CTRLP40313 264 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 AMTP48728 403 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 CCL20P78556 96 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 ZNF90Q03938 601 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 FAM78BQ5VT40 261 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 SIGLEC15Q6ZMC9 328 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 FA2HQ7L5A8 372 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 LYZL2Q7Z4W2 148 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 OR10G8Q8NGN5 311 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 SIGMAR1Q99720 223 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 MRPL18Q9H0U6 180 aaKnown RBP4.79□□□□□ -1.64
VPS53-213ENST00000572334 IL36BQ9NZH7 164 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 ARL2-SNX15V9GYD0 113 aa4.79□□□□□ -1.64
VPS53-213ENST00000572334 ABCA13Q86UQ4 5058 aa4.78□□□□□ -1.64
VPS53-213ENST00000572334 IGKV1OR2-108A0A075B7D4 117 aa4.78□□□□□ -1.64
VPS53-213ENST00000572334 IGSF23A1L1A6 192 aa4.78□□□□□ -1.64
VPS53-213ENST00000572334 OR5AL1P0C617 328 aa4.78□□□□□ -1.64
VPS53-213ENST00000572334 FGF8P55075 233 aaPredicted RBP4.78□□□□□ -1.64
VPS53-213ENST00000572334 FXYD7P58549 80 aa4.78□□□□□ -1.64
VPS53-213ENST00000572334 LCN15Q6UWW0 184 aa4.78□□□□□ -1.64
VPS53-213ENST00000572334 Q6ZR54 194 aa4.78□□□□□ -1.64
VPS53-213ENST00000572334 LINC00336Q6ZUF6 198 aa4.78□□□□□ -1.64
VPS53-213ENST00000572334 C1orf158Q8N1D5 194 aa4.78□□□□□ -1.64
VPS53-213ENST00000572334 POM121L12Q8N7R1 296 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms