RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 CD300EQ496F6 205 aaPredicted RBP15.93■□□□□ 0.14
CLN3-209ENST00000561689 FAM162BQ5T6X4 162 aa15.93■□□□□ 0.14
CLN3-209ENST00000561689 NPIPB6E9PJ23 425 aa15.93■□□□□ 0.14
CLN3-209ENST00000561689 SPINK4O60575 86 aa15.93■□□□□ 0.14
CLN3-209ENST00000561689 SH2D1AO60880 128 aa15.93■□□□□ 0.14
CLN3-209ENST00000561689 S100A8P05109 93 aa15.93■□□□□ 0.14
CLN3-209ENST00000561689 RPL19P84098 196 aaKnown RBP15.93■□□□□ 0.14
CLN3-209ENST00000561689 OR2D3Q8NGH3 330 aa15.93■□□□□ 0.14
CLN3-209ENST00000561689 TSKUQ8WUA8 353 aa15.92■□□□□ 0.14
CLN3-209ENST00000561689 LINC00477Q96M19 166 aa15.92■□□□□ 0.14
CLN3-209ENST00000561689 TENM1Q9UKZ4 2725 aa15.92■□□□□ 0.14
CLN3-209ENST00000561689 TYMSP04818 313 aa15.91■□□□□ 0.14
CLN3-209ENST00000561689 GDF5OSQ5U4N7 250 aa15.91■□□□□ 0.14
CLN3-209ENST00000561689 NEU1Q99519 415 aa15.91■□□□□ 0.14
CLN3-209ENST00000561689 GZMBP10144 247 aa15.91■□□□□ 0.14
CLN3-209ENST00000561689 CD33P20138 364 aa15.91■□□□□ 0.14
CLN3-209ENST00000561689 PDZD11Q5EBL8 140 aa15.9■□□□□ 0.14
CLN3-209ENST00000561689 BTF3L4Q96K17 158 aa15.9■□□□□ 0.14
CLN3-209ENST00000561689 PPP1R14DQ9NXH3 145 aa15.9■□□□□ 0.14
CLN3-209ENST00000561689 A8MWL6 223 aa15.89■□□□□ 0.13
CLN3-209ENST00000561689 J3KRW8 73 aa15.89■□□□□ 0.13
CLN3-209ENST00000561689 CT83Q5H943 113 aa15.89■□□□□ 0.13
CLN3-209ENST00000561689 ACTL10Q5JWF8 245 aa15.89■□□□□ 0.13
CLN3-209ENST00000561689 OR4B1Q8NGF8 309 aa15.89■□□□□ 0.13
CLN3-209ENST00000561689 MAST4O15021 2626 aa15.89■□□□□ 0.13
CLN3-209ENST00000561689 IZUMO1RA6ND01 250 aa15.89■□□□□ 0.13
CLN3-209ENST00000561689 HIGD1CA8MV81 97 aa15.89■□□□□ 0.13
CLN3-209ENST00000561689 FRMD6-AS1P0C7T7 363 aa15.89■□□□□ 0.13
CLN3-209ENST00000561689 SMIM6P0DI80 62 aa15.89■□□□□ 0.13
CLN3-209ENST00000561689 HIST3H2BBQ8N257 126 aa15.89■□□□□ 0.13
CLN3-209ENST00000561689 GTSF1Q8WW33 167 aa15.89■□□□□ 0.13
CLN3-209ENST00000561689 SAP30O75446 220 aa15.88■□□□□ 0.13
CLN3-209ENST00000561689 NUP35Q8NFH5 326 aa15.88■□□□□ 0.13
CLN3-209ENST00000561689 SIGLEC8Q9NYZ4 499 aa15.88■□□□□ 0.13
CLN3-209ENST00000561689 NAT8BQ9UHF3 227 aa15.88■□□□□ 0.13
CLN3-209ENST00000561689 ATRQ13535 2644 aa15.88■□□□□ 0.13
CLN3-209ENST00000561689 TRAV9-1A0A075B6T8 112 aa15.87■□□□□ 0.13
CLN3-209ENST00000561689 TMSB15BA0A087X1C1 80 aa15.87■□□□□ 0.13
CLN3-209ENST00000561689 PRR9Q5T870 116 aa15.87■□□□□ 0.13
CLN3-209ENST00000561689 FABP5P3A8MUU1 101 aa15.87■□□□□ 0.13
CLN3-209ENST00000561689 PF4P02776 101 aa15.87■□□□□ 0.13
CLN3-209ENST00000561689 MRPL54Q6P161 138 aaKnown RBP15.87■□□□□ 0.13
CLN3-209ENST00000561689 Q6ZQT7 251 aa15.87■□□□□ 0.13
CLN3-209ENST00000561689 LENEPQ9Y5L5 61 aa15.87■□□□□ 0.13
CLN3-209ENST00000561689 TRAV2A0A0B4J234 112 aa15.86■□□□□ 0.13
CLN3-209ENST00000561689 TMEM189A5PLL7 270 aa15.86■□□□□ 0.13
CLN3-209ENST00000561689 A0A0J9YX75 114 aa15.86■□□□□ 0.13
CLN3-209ENST00000561689 IGKV3-20P01619 116 aa15.86■□□□□ 0.13
CLN3-209ENST00000561689 DEFB131AP59861 70 aa15.86■□□□□ 0.13
CLN3-209ENST00000561689 EBLN2Q6P2I7 272 aa15.86■□□□□ 0.13
CLN3-209ENST00000561689 ZFAND2AQ8N6M9 145 aa15.86■□□□□ 0.13
CLN3-209ENST00000561689 PGLYRP4Q96LB8 373 aa15.86■□□□□ 0.13
CLN3-209ENST00000561689 FAM19A4Q96LR4 140 aa15.86■□□□□ 0.13
CLN3-209ENST00000561689 SORL1Q92673 2214 aa15.85■□□□□ 0.13
CLN3-209ENST00000561689 ORM1P02763 201 aa15.85■□□□□ 0.13
CLN3-209ENST00000561689 SPAG8Q99932 426 aaPredicted RBP15.85■□□□□ 0.13
CLN3-209ENST00000561689 CITED1Q99966 193 aa15.85■□□□□ 0.13
CLN3-209ENST00000561689 KIR3DS1Q14943 382 aa15.84■□□□□ 0.13
CLN3-209ENST00000561689 GFRA4Q9GZZ7 299 aa15.84■□□□□ 0.13
CLN3-209ENST00000561689 ZNF256Q9Y2P7 627 aaPredicted RBP15.84■□□□□ 0.13
CLN3-209ENST00000561689 TRAV25A0A0B4J276 109 aa15.84■□□□□ 0.13
CLN3-209ENST00000561689 OR4C46A6NHA9 309 aa15.83■□□□□ 0.12
CLN3-209ENST00000561689 GPX1P07203 203 aa15.83■□□□□ 0.12
CLN3-209ENST00000561689 ZNF124Q15973 351 aa15.83■□□□□ 0.12
CLN3-209ENST00000561689 KRTAP24-1Q3LI83 254 aa15.83■□□□□ 0.12
CLN3-209ENST00000561689 LINC00482Q8N8I6 264 aa15.83■□□□□ 0.12
CLN3-209ENST00000561689 C11orf21Q9P2W6 132 aa15.83■□□□□ 0.12
CLN3-209ENST00000561689 KNCNA6PVL3 124 aa15.82■□□□□ 0.12
CLN3-209ENST00000561689 FOXI2Q6ZQN5 318 aa15.82■□□□□ 0.12
CLN3-209ENST00000561689 TPPP3Q9BW30 176 aa15.82■□□□□ 0.12
CLN3-209ENST00000561689 XKRY2A2RUG3 117 aa15.82■□□□□ 0.12
CLN3-209ENST00000561689 FAM231BA6NCW3 169 aa15.82■□□□□ 0.12
CLN3-209ENST00000561689 RNASE4P34096 147 aaKnown RBP15.82■□□□□ 0.12
CLN3-209ENST00000561689 ZNF575Q86XF7 245 aa15.82■□□□□ 0.12
CLN3-209ENST00000561689 OR10D4PQ8NGN7 298 aa15.82■□□□□ 0.12
CLN3-209ENST00000561689 MAP6D1Q9H9H5 199 aa15.82■□□□□ 0.12
CLN3-209ENST00000561689 TRAPPC1Q9Y5R8 145 aa15.82■□□□□ 0.12
CLN3-209ENST00000561689 CRISP2P16562 243 aa15.81■□□□□ 0.12
CLN3-209ENST00000561689 NIT2Q9NQR4 276 aa15.81■□□□□ 0.12
CLN3-209ENST00000561689 VWFP04275 2813 aa15.8■□□□□ 0.12
CLN3-209ENST00000561689 FABP4P15090 132 aa15.8■□□□□ 0.12
CLN3-209ENST00000561689 S100A2P29034 98 aa15.8■□□□□ 0.12
CLN3-209ENST00000561689 PYY3Q5JQD4 70 aa15.8■□□□□ 0.12
CLN3-209ENST00000561689 IGKV3D-20A0A0C4DH25 116 aa15.8■□□□□ 0.12
CLN3-209ENST00000561689 TRBV7-9A0A0J9YWB2 115 aa15.8■□□□□ 0.12
CLN3-209ENST00000561689 GRIFINA4D1Z8 144 aa15.8■□□□□ 0.12
CLN3-209ENST00000561689 IGLV1-51P01701 117 aa15.8■□□□□ 0.12
CLN3-209ENST00000561689 FOXA3P55318 350 aaPredicted RBP15.8■□□□□ 0.12
CLN3-209ENST00000561689 LINC01559Q495D7 138 aa15.8■□□□□ 0.12
CLN3-209ENST00000561689 APRG1Q8IVJ8 170 aa15.8■□□□□ 0.12
CLN3-209ENST00000561689 RAB4BP61018 213 aa15.79■□□□□ 0.12
CLN3-209ENST00000561689 PRIMA1Q86XR5 153 aa15.79■□□□□ 0.12
CLN3-209ENST00000561689 HIST1H2BLQ99880 126 aa15.79■□□□□ 0.12
CLN3-209ENST00000561689 FBN1P35555 2871 aaKnown RBP15.79■□□□□ 0.12
CLN3-209ENST00000561689 SNURFLB1AK76 121 aa15.78■□□□□ 0.12
CLN3-209ENST00000561689 DUSP14O95147 198 aaKnown RBP15.78■□□□□ 0.12
CLN3-209ENST00000561689 COA6Q5JTJ3 125 aaKnown RBP15.78■□□□□ 0.12
CLN3-209ENST00000561689 CDPF1Q6NVV7 123 aa15.78■□□□□ 0.12
CLN3-209ENST00000561689 SPATA3Q8NHX4 192 aa15.78■□□□□ 0.12
CLN3-209ENST00000561689 KLLNB2CW77 178 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 121.3 ms