RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 BRI3O95415 125 aa16.26■□□□□ 0.19
VPS28-205ENST00000526204 C11orf21Q9P2W6 132 aa16.26■□□□□ 0.19
VPS28-205ENST00000526204 TRAV40A0A0B4J280 105 aa16.25■□□□□ 0.19
VPS28-205ENST00000526204 PPIFP30405 207 aaKnown RBP16.25■□□□□ 0.19
VPS28-205ENST00000526204 BRD3OSQ6XYD6 125 aa16.25■□□□□ 0.19
VPS28-205ENST00000526204 DEFB125Q8N687 156 aa16.25■□□□□ 0.19
VPS28-205ENST00000526204 CSMD1Q96PZ7 3565 aa16.25■□□□□ 0.19
VPS28-205ENST00000526204 PKD1L2Q7Z442 2459 aa16.25■□□□□ 0.19
VPS28-205ENST00000526204 H3BUA1 57 aa16.25■□□□□ 0.19
VPS28-205ENST00000526204 NDUFS8O00217 210 aa16.25■□□□□ 0.19
VPS28-205ENST00000526204 FXYD7P58549 80 aa16.25■□□□□ 0.19
VPS28-205ENST00000526204 LINC00527Q9UJ94 153 aa16.25■□□□□ 0.19
VPS28-205ENST00000526204 IGHV4-61A0A0C4DH41 118 aa16.24■□□□□ 0.19
VPS28-205ENST00000526204 NDUFA4O00483 81 aa16.24■□□□□ 0.19
VPS28-205ENST00000526204 FCER1GP30273 86 aa16.24■□□□□ 0.19
VPS28-205ENST00000526204 Q6ZVH6 145 aa16.24■□□□□ 0.19
VPS28-205ENST00000526204 USMG5Q96IX5 58 aa16.24■□□□□ 0.19
VPS28-205ENST00000526204 CCL25O15444 150 aa16.24■□□□□ 0.19
VPS28-205ENST00000526204 C10orf105Q8TEF2 133 aa16.24■□□□□ 0.19
VPS28-205ENST00000526204 CCL19Q99731 98 aa16.23■□□□□ 0.19
VPS28-205ENST00000526204 IGHV4-4A0A075B6R2 117 aa16.22■□□□□ 0.19
VPS28-205ENST00000526204 IGHV7-4-1A0A0J9YVY3 117 aa16.22■□□□□ 0.19
VPS28-205ENST00000526204 ANKRD39Q53RE8 183 aa16.22■□□□□ 0.19
VPS28-205ENST00000526204 PSMG4Q5JS54 123 aa16.22■□□□□ 0.19
VPS28-205ENST00000526204 C2orf91Q6ZV80 131 aa16.22■□□□□ 0.19
VPS28-205ENST00000526204 LEPP41159 167 aa16.22■□□□□ 0.19
VPS28-205ENST00000526204 LINC00477Q96M19 166 aa16.22■□□□□ 0.19
VPS28-205ENST00000526204 TAX1BP3O14907 124 aa16.21■□□□□ 0.19
VPS28-205ENST00000526204 GAS8-AS1O95177 125 aa16.21■□□□□ 0.19
VPS28-205ENST00000526204 IGHG2P01859 326 aa16.21■□□□□ 0.19
VPS28-205ENST00000526204 FGF6P10767 208 aa16.21■□□□□ 0.19
VPS28-205ENST00000526204 Q8N8P6 123 aa16.21■□□□□ 0.19
VPS28-205ENST00000526204 SNAI2O43623 268 aa16.21■□□□□ 0.18
VPS28-205ENST00000526204 CD5LO43866 347 aa16.21■□□□□ 0.18
VPS28-205ENST00000526204 CLEC2AQ6UVW9 174 aa16.21■□□□□ 0.18
VPS28-205ENST00000526204 ASH1LQ9NR48 2969 aaKnown RBP16.2■□□□□ 0.18
VPS28-205ENST00000526204 PRSS47A8MTI9 375 aa16.2■□□□□ 0.18
VPS28-205ENST00000526204 EVI2AP22794 236 aa16.2■□□□□ 0.18
VPS28-205ENST00000526204 FOXE3Q13461 319 aa16.2■□□□□ 0.18
VPS28-205ENST00000526204 BOD1L2Q8IYS8 172 aa16.2■□□□□ 0.18
VPS28-205ENST00000526204 OR2K2Q8NGT1 345 aa16.2■□□□□ 0.18
VPS28-205ENST00000526204 OVOL1O14753 267 aa16.19■□□□□ 0.18
VPS28-205ENST00000526204 UNQ9165/PRO28630Q6UXU0 137 aa16.19■□□□□ 0.18
VPS28-205ENST00000526204 A6NDX4 124 aa16.19■□□□□ 0.18
VPS28-205ENST00000526204 SMAD7O15105 426 aaKnown RBP16.19■□□□□ 0.18
VPS28-205ENST00000526204 IGHV4-38-2P0DP08 117 aa16.19■□□□□ 0.18
VPS28-205ENST00000526204 SPANXN1Q5VSR9 72 aa16.19■□□□□ 0.18
VPS28-205ENST00000526204 OR9G4Q8NGQ1 327 aa16.19■□□□□ 0.18
VPS28-205ENST00000526204 OR10J6PQ8NGY7 276 aa16.19■□□□□ 0.18
VPS28-205ENST00000526204 SIVA1O15304 175 aa16.18■□□□□ 0.18
VPS28-205ENST00000526204 SEC11AP67812 179 aa16.18■□□□□ 0.18
VPS28-205ENST00000526204 VAMP3Q15836 100 aa16.18■□□□□ 0.18
VPS28-205ENST00000526204 C20orf173Q96LM9 149 aa16.18■□□□□ 0.18
VPS28-205ENST00000526204 TMEM97Q5BJF2 176 aa16.18■□□□□ 0.18
VPS28-205ENST00000526204 H3BUX3 64 aa16.17■□□□□ 0.18
VPS28-205ENST00000526204 TRBV12-3P01733 135 aa16.17■□□□□ 0.18
VPS28-205ENST00000526204 GATA1P15976 413 aaPredicted RBP16.17■□□□□ 0.18
VPS28-205ENST00000526204 LY6EQ16553 131 aa16.17■□□□□ 0.18
VPS28-205ENST00000526204 C18orf15Q96N68 181 aa16.17■□□□□ 0.18
VPS28-205ENST00000526204 IGLV2-18A0A075B6J9 118 aa16.16■□□□□ 0.18
VPS28-205ENST00000526204 SOCS3O14543 225 aa16.16■□□□□ 0.18
VPS28-205ENST00000526204 GPHB5Q86YW7 130 aa16.16■□□□□ 0.18
VPS28-205ENST00000526204 WFDC3Q8IUB2 231 aa16.16■□□□□ 0.18
VPS28-205ENST00000526204 DKK2Q9UBU2 259 aa16.16■□□□□ 0.18
VPS28-205ENST00000526204 UFC1Q9Y3C8 167 aa16.16■□□□□ 0.18
VPS28-205ENST00000526204 CACNA1BQ00975 2339 aa16.15■□□□□ 0.18
VPS28-205ENST00000526204 ATP5J2P56134 94 aa16.15■□□□□ 0.18
VPS28-205ENST00000526204 NRACQ8N912 160 aa16.15■□□□□ 0.18
VPS28-205ENST00000526204 TMEM158Q8WZ71 300 aa16.15■□□□□ 0.18
VPS28-205ENST00000526204 ZMAT4Q9H898 229 aa16.15■□□□□ 0.18
VPS28-205ENST00000526204 SMPXQ9UHP9 88 aa16.15■□□□□ 0.18
VPS28-205ENST00000526204 TRAV21A0A0B4J279 112 aa16.15■□□□□ 0.18
VPS28-205ENST00000526204 A0A0G2JLM5 398 aa16.15■□□□□ 0.18
VPS28-205ENST00000526204 PRSS1P07477 247 aa16.15■□□□□ 0.18
VPS28-205ENST00000526204 MSMBP08118 114 aa16.15■□□□□ 0.18
VPS28-205ENST00000526204 PRR9Q5T870 116 aa16.15■□□□□ 0.18
VPS28-205ENST00000526204 MRAP2Q96G30 205 aa16.15■□□□□ 0.18
VPS28-205ENST00000526204 A1L4Q6 167 aa16.14■□□□□ 0.17
VPS28-205ENST00000526204 ATP5LO75964 103 aa16.14■□□□□ 0.17
VPS28-205ENST00000526204 PF4V1P10720 104 aa16.14■□□□□ 0.17
VPS28-205ENST00000526204 ODF1Q14990 250 aa16.14■□□□□ 0.17
VPS28-205ENST00000526204 ZFAND2AQ8N6M9 145 aa16.14■□□□□ 0.17
VPS28-205ENST00000526204 H3BVH4 76 aa16.13■□□□□ 0.17
VPS28-205ENST00000526204 Q6ZQT7 251 aa16.13■□□□□ 0.17
VPS28-205ENST00000526204 OR4C5Q8NGB2 326 aa16.13■□□□□ 0.17
VPS28-205ENST00000526204 OR4X2Q8NGF9 303 aa16.13■□□□□ 0.17
VPS28-205ENST00000526204 LAGE3Q14657 143 aa16.13■□□□□ 0.17
VPS28-205ENST00000526204 ACACBO00763 2458 aa16.13■□□□□ 0.17
VPS28-205ENST00000526204 IGHV4-30-2A0A087WSY4 118 aa16.12■□□□□ 0.17
VPS28-205ENST00000526204 IGHV3-11P01762 117 aa16.12■□□□□ 0.17
VPS28-205ENST00000526204 KLK15Q9H2R5 256 aa16.12■□□□□ 0.17
VPS28-205ENST00000526204 SVEP1Q4LDE5 3571 aa16.12■□□□□ 0.17
VPS28-205ENST00000526204 TRBV7-9A0A0J9YWB2 115 aa16.12■□□□□ 0.17
VPS28-205ENST00000526204 CBY3A6NI87 242 aa16.12■□□□□ 0.17
VPS28-205ENST00000526204 IGLV1-40P01703 118 aa16.12■□□□□ 0.17
VPS28-205ENST00000526204 SMIM17P0DL12 118 aa16.12■□□□□ 0.17
VPS28-205ENST00000526204 HSD52Q0P140 79 aa16.12■□□□□ 0.17
VPS28-205ENST00000526204 PEF1Q9UBV8 284 aaKnown RBP16.12■□□□□ 0.17
VPS28-205ENST00000526204 AKAP6Q13023 2319 aa16.11■□□□□ 0.17
VPS28-205ENST00000526204 NMUP48645 174 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms