RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 ZNF705FA8MVS1 300 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-203ENST00000389856 F2Z2F3 143 aa13.85□□□□□ -0.19
CCDC88C-203ENST00000389856 ZNF705DP0CH99 300 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-203ENST00000389856 ZNF705BP0CI00 300 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-203ENST00000389856 CT45A10P0DMU9 189 aa13.85□□□□□ -0.19
CCDC88C-203ENST00000389856 RAB4AP20338 218 aa13.85□□□□□ -0.19
CCDC88C-203ENST00000389856 AMTP48728 403 aa13.85□□□□□ -0.19
CCDC88C-203ENST00000389856 Q71RC1 249 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-203ENST00000389856 TCF24Q7RTU0 167 aa13.85□□□□□ -0.19
CCDC88C-203ENST00000389856 GATD1Q8NB37 220 aa13.85□□□□□ -0.19
CCDC88C-203ENST00000389856 C14orf144Q96I85 54 aa13.85□□□□□ -0.19
CCDC88C-203ENST00000389856 TSSC4Q9Y5U2 329 aaPredicted RBP13.85□□□□□ -0.19
CCDC88C-203ENST00000389856 RPL11P62913 178 aaKnown RBP13.84□□□□□ -0.19
CCDC88C-203ENST00000389856 RIGQ13278 110 aa13.84□□□□□ -0.19
CCDC88C-203ENST00000389856 ZC2HC1AQ96GY0 325 aa13.84□□□□□ -0.19
CCDC88C-203ENST00000389856 NRN1Q9NPD7 142 aa13.84□□□□□ -0.19
CCDC88C-203ENST00000389856 OTOGQ6ZRI0 2925 aa13.84□□□□□ -0.19
CCDC88C-203ENST00000389856 RBAKDNA6NC62 111 aa13.83□□□□□ -0.2
CCDC88C-203ENST00000389856 CAMPP49913 170 aa13.83□□□□□ -0.2
CCDC88C-203ENST00000389856 SYNJ2BPP57105 145 aa13.83□□□□□ -0.2
CCDC88C-203ENST00000389856 TCTEX1D4Q5JR98 221 aa13.83□□□□□ -0.2
CCDC88C-203ENST00000389856 OR11H1Q8NG94 326 aa13.83□□□□□ -0.2
CCDC88C-203ENST00000389856 PGLYRP4Q96LB8 373 aa13.83□□□□□ -0.2
CCDC88C-203ENST00000389856 RNF114Q9Y508 228 aa13.83□□□□□ -0.2
CCDC88C-203ENST00000389856 TMEM213A2RRL7 107 aa13.82□□□□□ -0.2
CCDC88C-203ENST00000389856 M0R3E3 92 aa13.82□□□□□ -0.2
CCDC88C-203ENST00000389856 LCN12Q6JVE5 192 aa13.82□□□□□ -0.2
CCDC88C-203ENST00000389856 C20orf144Q9BQM9 153 aa13.82□□□□□ -0.2
CCDC88C-203ENST00000389856 NDFIP1Q9BT67 221 aa13.82□□□□□ -0.2
CCDC88C-203ENST00000389856 MTORP42345 2549 aa13.82□□□□□ -0.2
CCDC88C-203ENST00000389856 ZFHX3Q15911 3703 aa13.82□□□□□ -0.2
CCDC88C-203ENST00000389856 A0A1B0GUT8 65 aa13.82□□□□□ -0.2
CCDC88C-203ENST00000389856 ID1P41134 155 aa13.82□□□□□ -0.2
CCDC88C-203ENST00000389856 MRPL52Q86TS9 123 aaKnown RBP13.82□□□□□ -0.2
CCDC88C-203ENST00000389856 RCHY1Q96PM5 261 aa13.82□□□□□ -0.2
CCDC88C-203ENST00000389856 RPS20P60866 119 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-203ENST00000389856 SRSF2Q01130 221 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-203ENST00000389856 BORCS7Q96B45 105 aa13.81□□□□□ -0.2
CCDC88C-203ENST00000389856 CHCHD1Q96BP2 118 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-203ENST00000389856 HSBP1O75506 76 aa13.8□□□□□ -0.2
CCDC88C-203ENST00000389856 PMCHP20382 165 aa13.8□□□□□ -0.2
CCDC88C-203ENST00000389856 C2orf70A6NJV1 201 aa13.79□□□□□ -0.2
CCDC88C-203ENST00000389856 CD28P10747 220 aa13.79□□□□□ -0.2
CCDC88C-203ENST00000389856 LOC102724200A0A096LPH7 203 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-203ENST00000389856 OVOL1O14753 267 aa13.79□□□□□ -0.2
CCDC88C-203ENST00000389856 DEFB136Q30KP8 78 aa13.79□□□□□ -0.2
CCDC88C-203ENST00000389856 NIT1Q86X76 327 aa13.79□□□□□ -0.2
CCDC88C-203ENST00000389856 VAMP8Q9BV40 100 aa13.79□□□□□ -0.2
CCDC88C-203ENST00000389856 TRAV8-2A0A0B4J237 113 aa13.78□□□□□ -0.2
CCDC88C-203ENST00000389856 SLURP1P55000 103 aa13.78□□□□□ -0.2
CCDC88C-203ENST00000389856 PROK1P58294 105 aa13.78□□□□□ -0.2
CCDC88C-203ENST00000389856 KRTDAPP60985 99 aa13.78□□□□□ -0.2
CCDC88C-203ENST00000389856 C18orf65Q6ZTR6 163 aa13.78□□□□□ -0.2
CCDC88C-203ENST00000389856 OR9G4Q8NGQ1 327 aa13.78□□□□□ -0.2
CCDC88C-203ENST00000389856 SSBP4Q9BWG4 385 aaPredicted RBP13.78□□□□□ -0.2
CCDC88C-203ENST00000389856 TMEM78Q5T7P6 136 aa13.77□□□□□ -0.21
CCDC88C-203ENST00000389856 RNF182Q8N6D2 247 aa13.77□□□□□ -0.21
CCDC88C-203ENST00000389856 ZNF738Q8NE65 137 aa13.77□□□□□ -0.21
CCDC88C-203ENST00000389856 CITED2Q99967 270 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-203ENST00000389856 IGKV2-40A0A087WW87 121 aaPredicted RBP13.76□□□□□ -0.21
CCDC88C-203ENST00000389856 TMEM189A5PLL7 270 aa13.76□□□□□ -0.21
CCDC88C-203ENST00000389856 SOCS3O14543 225 aa13.76□□□□□ -0.21
CCDC88C-203ENST00000389856 IGKV2D-40P01614 121 aaPredicted RBP13.76□□□□□ -0.21
CCDC88C-203ENST00000389856 CRIP1P50238 77 aa13.76□□□□□ -0.21
CCDC88C-203ENST00000389856 PMCHL1Q16048 86 aa13.76□□□□□ -0.21
CCDC88C-203ENST00000389856 IGFL4Q6B9Z1 124 aa13.76□□□□□ -0.21
CCDC88C-203ENST00000389856 PRR25Q96S07 402 aa13.76□□□□□ -0.21
CCDC88C-203ENST00000389856 C2orf88Q9BSF0 95 aa13.76□□□□□ -0.21
CCDC88C-203ENST00000389856 CCL24O00175 119 aa13.75□□□□□ -0.21
CCDC88C-203ENST00000389856 OR5AL1P0C617 328 aa13.75□□□□□ -0.21
CCDC88C-203ENST00000389856 HLA-DMBP28068 263 aa13.75□□□□□ -0.21
CCDC88C-203ENST00000389856 SNRPD3P62318 126 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-203ENST00000389856 FHL3Q13643 280 aa13.75□□□□□ -0.21
CCDC88C-203ENST00000389856 ZNF493Q6ZR52 646 aa13.75□□□□□ -0.21
CCDC88C-203ENST00000389856 OR10J6PQ8NGY7 276 aa13.75□□□□□ -0.21
CCDC88C-203ENST00000389856 M0R2Z0 102 aa13.75□□□□□ -0.21
CCDC88C-203ENST00000389856 RNASEKQ6P5S7 137 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-203ENST00000389856 C11orf44Q8N8P7 122 aa13.75□□□□□ -0.21
CCDC88C-203ENST00000389856 Q8N976 141 aa13.75□□□□□ -0.21
CCDC88C-203ENST00000389856 A0A1W2PRX2 142 aa13.74□□□□□ -0.21
CCDC88C-203ENST00000389856 SH2D1AO60880 128 aa13.74□□□□□ -0.21
CCDC88C-203ENST00000389856 C3orf79P0CE67 100 aa13.74□□□□□ -0.21
CCDC88C-203ENST00000389856 NTF3P20783 257 aa13.74□□□□□ -0.21
CCDC88C-203ENST00000389856 C9orf47Q6ZRZ4 202 aa13.74□□□□□ -0.21
CCDC88C-203ENST00000389856 DYNLRB2Q8TF09 96 aa13.74□□□□□ -0.21
CCDC88C-203ENST00000389856 RAX2Q96IS3 184 aa13.74□□□□□ -0.21
CCDC88C-203ENST00000389856 MIEN1Q9BRT3 115 aa13.74□□□□□ -0.21
CCDC88C-203ENST00000389856 NSD1Q96L73 2696 aaPredicted RBP13.74□□□□□ -0.21
CCDC88C-203ENST00000389856 TRAV2A0A0B4J234 112 aa13.73□□□□□ -0.21
CCDC88C-203ENST00000389856 ZNF138P52744 262 aa13.73□□□□□ -0.21
CCDC88C-203ENST00000389856 LINC00477Q96M19 166 aa13.73□□□□□ -0.21
CCDC88C-203ENST00000389856 C8orf49Q96NF6 230 aa13.73□□□□□ -0.21
CCDC88C-203ENST00000389856 VGLL1Q99990 258 aa13.73□□□□□ -0.21
CCDC88C-203ENST00000389856 MS4A6AQ9H2W1 248 aa13.73□□□□□ -0.21
CCDC88C-203ENST00000389856 PPP1R14DQ9NXH3 145 aa13.73□□□□□ -0.21
CCDC88C-203ENST00000389856 LENEPQ9Y5L5 61 aa13.73□□□□□ -0.21
CCDC88C-203ENST00000389856 IGKV3-7A0A075B6H7 116 aa13.72□□□□□ -0.21
CCDC88C-203ENST00000389856 C20orf202A1L168 122 aa13.72□□□□□ -0.21
CCDC88C-203ENST00000389856 DLX4Q92988 240 aaPredicted RBP13.72□□□□□ -0.21
CCDC88C-203ENST00000389856 ANK3Q12955 4377 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 139.3 ms