RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 M0R233 179 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 M0R378 163 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 RER1O15258 196 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 CCL16O15467 120 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 HIST1H2BKO60814 126 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 DHFRP00374 187 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 APOC2P02655 101 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 APODP05090 189 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 CSN2P05814 226 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 HIST1H2BJP06899 126 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 CXCL8P10145 99 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 BCL2P10415 239 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 RNASE4P34096 147 aaKnown RBP0.57□□□□□ -2.32
VPS50-219ENST00000495039 RPL22P35268 128 aaKnown RBP0.57□□□□□ -2.32
VPS50-219ENST00000495039 RPL35P42766 123 aaKnown RBP0.57□□□□□ -2.32
VPS50-219ENST00000495039 GUCA1AP43080 201 aaPredicted RBP0.57□□□□□ -2.32
VPS50-219ENST00000495039 RAB5CP51148 216 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 LSM3P62310 102 aaKnown RBP0.57□□□□□ -2.32
VPS50-219ENST00000495039 CDK6Q00534 326 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 MPV17LQ2QL34 196 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 DEFB113Q30KQ7 82 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 FAM74A1Q5RGS3 127 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 TMEM78Q5T7P6 136 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 TEX261Q6UWH6 196 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 TOMM20LQ6UXN7 152 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 SOSTDC1Q6X4U4 206 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 AKAP14Q86UN6 197 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 TAC4Q86UU9 113 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 ANGPTL5Q86XS5 388 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 CLECL1Q8IZS7 167 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 C4orf33Q8N1A6 199 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 EXOC3-AS1Q8N2X6 119 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 ST6GALNAC3Q8NDV1 305 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 OR5D14Q8NGL3 314 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 OR9Q1Q8NGQ5 310 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 OR10K1Q8NGX5 313 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 CHCHD1Q96BP2 118 aaKnown RBP0.57□□□□□ -2.32
VPS50-219ENST00000495039 BORCS8Q96FH0 119 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 TP53RKQ96S44 253 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 GPX7Q96SL4 187 aaPredicted RBP0.57□□□□□ -2.32
VPS50-219ENST00000495039 AMELYQ99218 206 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 AIF1LQ9BQI0 150 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 EFCAB11Q9BUY7 163 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 SNRNP25Q9BV90 132 aaKnown RBP0.57□□□□□ -2.32
VPS50-219ENST00000495039 DPY30Q9C005 99 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 OR2H1Q9GZK4 316 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 TMEM126AQ9H061 195 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 SCN3BQ9NY72 215 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 SMPXQ9UHP9 88 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 OR52A1Q9UKL2 312 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 U3KQ87 197 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 ZMYM4Q5VZL5 1548 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 ABCA8O94911 1581 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 SAMD9Q5K651 1589 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 KIAA0556O60303 1618 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 CAMSAP1Q5T5Y3 1602 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 ALKQ9UM73 1620 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 MAP3K4Q9Y6R4 1608 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 DISP2A7MBM2 1401 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 TECPR2O15040 1411 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 CUL7Q14999 1698 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 ABCC3O15438 1527 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 SLIT1O75093 1534 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 CPS1P31327 1500 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 AGLP35573 1532 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 CLASP1Q7Z460 1538 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 LMTK2Q8IWU2 1503 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 LRRC7Q96NW7 1537 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 TULP4Q9NRJ4 1543 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 SMIM31A0A1B0GVY4 71 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 A0A1W2PRE2 83 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 LOC730098B7Z3J9 87 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 H3BQF6 201 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 KPNA4O00629 521 aaPredicted RBP0.56□□□□□ -2.32
VPS50-219ENST00000495039 MT-ND6P03923 174 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 CXCL1P09341 107 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 LINC00032P0C843 101 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 PIRTP0C851 137 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 MPC1LP0DKB6 136 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 FABP2P12104 132 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 COX4I1P13073 169 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 ZNF25P17030 456 aaPredicted RBP0.56□□□□□ -2.32
VPS50-219ENST00000495039 CMPK1P30085 196 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 S100A3P33764 101 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 SDC2P34741 201 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 POLR2JP52435 117 aaKnown RBP0.56□□□□□ -2.32
VPS50-219ENST00000495039 SMIM11AP58511 58 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 MAXP61244 160 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 COPZ1P61923 177 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 HBBP68871 147 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 MRPS36P82909 103 aaKnown RBP0.56□□□□□ -2.32
VPS50-219ENST00000495039 KLRD1Q13241 179 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 EIF3IQ13347 325 aaKnown RBP0.56□□□□□ -2.32
VPS50-219ENST00000495039 CIRBPQ14011 172 aaKnown RBP0.56□□□□□ -2.32
VPS50-219ENST00000495039 LTC4SQ16873 150 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 TMEM128Q5BJH2 165 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 NCBP2-AS2Q69YL0 99 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 SCIMPQ6UWF3 145 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 TEN1Q86WV5 123 aa0.56□□□□□ -2.32
VPS50-219ENST00000495039 GKN2Q86XP6 184 aa0.56□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms