RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 PLXDC1Q8IUK5 500 aa12.34□□□□□ -0.43
RTN3-205ENST00000356000 TMEM75Q8N9X5 138 aa12.34□□□□□ -0.43
RTN3-205ENST00000356000 HIGD1AQ9Y241 93 aa12.34□□□□□ -0.43
RTN3-205ENST00000356000 IGHV1OR21-1A0A087WYE8 117 aa12.34□□□□□ -0.43
RTN3-205ENST00000356000 A0A1B0GX51 115 aa12.34□□□□□ -0.43
RTN3-205ENST00000356000 ZNF826PQ6ZT77 177 aa12.34□□□□□ -0.43
RTN3-205ENST00000356000 NGBQ9NPG2 151 aa12.34□□□□□ -0.43
RTN3-205ENST00000356000 NPFFO15130 113 aa12.33□□□□□ -0.44
RTN3-205ENST00000356000 NDUFA3O95167 84 aa12.33□□□□□ -0.44
RTN3-205ENST00000356000 ERHP84090 104 aaKnown RBP12.33□□□□□ -0.44
RTN3-205ENST00000356000 FSCN3Q9NQT6 498 aa12.33□□□□□ -0.44
RTN3-205ENST00000356000 CFAP54Q96N23 3096 aa12.33□□□□□ -0.44
RTN3-205ENST00000356000 M0R2P5 195 aa12.33□□□□□ -0.44
RTN3-205ENST00000356000 SAA2P0DJI9 122 aaPredicted RBP12.33□□□□□ -0.44
RTN3-205ENST00000356000 EDDM3AQ14507 147 aa12.33□□□□□ -0.44
RTN3-205ENST00000356000 MRPL36Q9P0J6 103 aaKnown RBP12.33□□□□□ -0.44
RTN3-205ENST00000356000 TRAV2A0A0B4J234 112 aa12.32□□□□□ -0.44
RTN3-205ENST00000356000 TGFAP01135 160 aa12.32□□□□□ -0.44
RTN3-205ENST00000356000 NTN5Q8WTR8 489 aaPredicted RBP12.32□□□□□ -0.44
RTN3-205ENST00000356000 LINC01600Q96MT4 127 aa12.32□□□□□ -0.44
RTN3-205ENST00000356000 IGHV3OR15-7A0A075B7D8 119 aa12.32□□□□□ -0.44
RTN3-205ENST00000356000 IGKV3D-15A0A087WSY6 115 aa12.32□□□□□ -0.44
RTN3-205ENST00000356000 INS-IGF2F8WCM5 200 aa12.32□□□□□ -0.44
RTN3-205ENST00000356000 NDUFA7O95182 113 aa12.32□□□□□ -0.44
RTN3-205ENST00000356000 RPL13AP40429 203 aaKnown RBP12.32□□□□□ -0.44
RTN3-205ENST00000356000 DEFB133Q30KQ1 61 aa12.32□□□□□ -0.44
RTN3-205ENST00000356000 EXOC3-AS1Q8N2X6 119 aa12.32□□□□□ -0.44
RTN3-205ENST00000356000 RNF185Q96GF1 192 aa12.32□□□□□ -0.44
RTN3-205ENST00000356000 TMEM101Q96IK0 257 aa12.32□□□□□ -0.44
RTN3-205ENST00000356000 NDUFA4L2Q9NRX3 87 aa12.32□□□□□ -0.44
RTN3-205ENST00000356000 ONECUT1Q9UBC0 465 aa12.32□□□□□ -0.44
RTN3-205ENST00000356000 IGHV3-48P01763 117 aa12.31□□□□□ -0.44
RTN3-205ENST00000356000 MYOZ3Q8TDC0 251 aa12.31□□□□□ -0.44
RTN3-205ENST00000356000 USP24Q9UPU5 2620 aa12.31□□□□□ -0.44
RTN3-205ENST00000356000 SRSF9Q13242 221 aaKnown RBP eCLIP12.31□□□□□ -0.44
RTN3-205ENST00000356000 CXorf67Q86X51 503 aaPredicted RBP12.31□□□□□ -0.44
RTN3-205ENST00000356000 ASCL2Q99929 193 aa12.31□□□□□ -0.44
RTN3-205ENST00000356000 PI4KAP42356 2102 aa12.3□□□□□ -0.44
RTN3-205ENST00000356000 TNFRSF6BO95407 300 aa12.3□□□□□ -0.44
RTN3-205ENST00000356000 SDK2Q58EX2 2172 aa12.3□□□□□ -0.44
RTN3-205ENST00000356000 UTF1Q5T230 341 aa12.3□□□□□ -0.44
RTN3-205ENST00000356000 MRPL20Q9BYC9 149 aaKnown RBP12.3□□□□□ -0.44
RTN3-205ENST00000356000 TIMM23O14925 209 aa12.3□□□□□ -0.44
RTN3-205ENST00000356000 CRIP2P52943 208 aaPredicted RBP12.3□□□□□ -0.44
RTN3-205ENST00000356000 HES1Q14469 280 aa12.3□□□□□ -0.44
RTN3-205ENST00000356000 C10orf126Q8N4M7 172 aa12.3□□□□□ -0.44
RTN3-205ENST00000356000 TMEM190Q8WZ59 177 aa12.3□□□□□ -0.44
RTN3-205ENST00000356000 GAS8-AS1O95177 125 aa12.29□□□□□ -0.44
RTN3-205ENST00000356000 Q8N8P6 123 aa12.29□□□□□ -0.44
RTN3-205ENST00000356000 OR13C6PQ8NH95 151 aa12.29□□□□□ -0.44
RTN3-205ENST00000356000 PRADC1Q9BSG0 188 aa12.29□□□□□ -0.44
RTN3-205ENST00000356000 ASXL3Q9C0F0 2248 aa12.29□□□□□ -0.44
RTN3-205ENST00000356000 CACNA1EQ15878 2313 aa12.29□□□□□ -0.44
RTN3-205ENST00000356000 TRBV7-7A0A0K0K1E9 115 aa12.29□□□□□ -0.44
RTN3-205ENST00000356000 OOSP1A8MZH6 123 aa12.29□□□□□ -0.44
RTN3-205ENST00000356000 DUX1O43812 170 aa12.29□□□□□ -0.44
RTN3-205ENST00000356000 CD177Q8N6Q3 437 aa12.29□□□□□ -0.44
RTN3-205ENST00000356000 IGLV2-18A0A075B6J9 118 aa12.28□□□□□ -0.44
RTN3-205ENST00000356000 F8VRH5 84 aa12.28□□□□□ -0.44
RTN3-205ENST00000356000 SUB1P53999 127 aaKnown RBP eCLIP12.28□□□□□ -0.444e-7■■□□□ 11.5
RTN3-205ENST00000356000 RPS28P62857 69 aaKnown RBP12.28□□□□□ -0.44
RTN3-205ENST00000356000 HERVK_113P63121 156 aa12.28□□□□□ -0.44
RTN3-205ENST00000356000 TMEM155Q4W5P6 130 aa12.28□□□□□ -0.44
RTN3-205ENST00000356000 OR4C13Q8NGP0 309 aa12.28□□□□□ -0.44
RTN3-205ENST00000356000 LEAP2Q969E1 77 aa12.28□□□□□ -0.44
RTN3-205ENST00000356000 MAP1BP46821 2468 aaKnown RBP12.28□□□□□ -0.44
RTN3-205ENST00000356000 H7C1H1 209 aa12.28□□□□□ -0.44
RTN3-205ENST00000356000 SAA1P0DJI8 122 aaPredicted RBP12.28□□□□□ -0.44
RTN3-205ENST00000356000 C9orf153Q5TBE3 101 aa12.28□□□□□ -0.44
RTN3-205ENST00000356000 TMEM14CQ9P0S9 112 aa12.28□□□□□ -0.44
RTN3-205ENST00000356000 PCNX2A6NKB5 2137 aa12.28□□□□□ -0.44
RTN3-205ENST00000356000 TRAV12-1A0A0B4J245 112 aa12.27□□□□□ -0.44
RTN3-205ENST00000356000 IQCF6A8MYZ5 107 aa12.27□□□□□ -0.44
RTN3-205ENST00000356000 IGKV1-16P04430 117 aa12.27□□□□□ -0.44
RTN3-205ENST00000356000 CFC1BP0CG36 223 aa12.27□□□□□ -0.44
RTN3-205ENST00000356000 CFC1P0CG37 223 aa12.27□□□□□ -0.44
RTN3-205ENST00000356000 PCOLCEQ15113 449 aa12.27□□□□□ -0.44
RTN3-205ENST00000356000 C3orf22Q8N5N4 141 aa12.27□□□□□ -0.44
RTN3-205ENST00000356000 PLEKHB2Q96CS7 222 aa12.27□□□□□ -0.44
RTN3-205ENST00000356000 TIMD4Q96H15 378 aa12.27□□□□□ -0.44
RTN3-205ENST00000356000 SSUH2Q9Y2M2 353 aa12.27□□□□□ -0.44
RTN3-205ENST00000356000 LGALS9O00182 355 aa12.27□□□□□ -0.45
RTN3-205ENST00000356000 ZNF815PA8K554 130 aa12.26□□□□□ -0.45
RTN3-205ENST00000356000 SCGB1D4Q6XE38 83 aa12.26□□□□□ -0.45
RTN3-205ENST00000356000 C8orf49Q96NF6 230 aa12.26□□□□□ -0.45
RTN3-205ENST00000356000 E7EUB6 86 aa12.26□□□□□ -0.45
RTN3-205ENST00000356000 CECR9P0C854 216 aa12.26□□□□□ -0.45
RTN3-205ENST00000356000 DMXL1Q9Y485 3027 aa12.26□□□□□ -0.45
RTN3-205ENST00000356000 TEX49A0A1B0GTD5 131 aa12.25□□□□□ -0.45
RTN3-205ENST00000356000 RFPL3SP0C7P2 107 aa12.25□□□□□ -0.45
RTN3-205ENST00000356000 HLA-DMBP28068 263 aa12.25□□□□□ -0.45
RTN3-205ENST00000356000 WT1-ASQ06250 92 aa12.25□□□□□ -0.45
RTN3-205ENST00000356000 C6orf15Q6UXA7 325 aaPredicted RBP12.25□□□□□ -0.45
RTN3-205ENST00000356000 TRPT1Q86TN4 253 aaKnown RBP12.25□□□□□ -0.45
RTN3-205ENST00000356000 OBP2BQ9NPH6 170 aa12.25□□□□□ -0.45
RTN3-205ENST00000356000 DCHS1Q96JQ0 3298 aa12.25□□□□□ -0.45
RTN3-205ENST00000356000 FAM208BQ5VWN6 2430 aa12.25□□□□□ -0.45
RTN3-205ENST00000356000 PRDX2P32119 198 aa12.25□□□□□ -0.45
RTN3-205ENST00000356000 ZNF474Q6S9Z5 364 aaPredicted RBP12.25□□□□□ -0.45
RTN3-205ENST00000356000 COX6B1P14854 86 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 99 ms