RNA–Protein interactions for RNA: ENST00000527733.5

USP47-207, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene USP47, Length 4,525 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-207ENST00000527733 SMIM12Q96EX1 92 aa11.88□□□□□ -0.51
USP47-207ENST00000527733 TRAV12-3A0A0B4J271 114 aa11.88□□□□□ -0.51
USP47-207ENST00000527733 C19orf54Q5BKX5 351 aa11.88□□□□□ -0.51
USP47-207ENST00000527733 MRPL27Q9P0M9 148 aaKnown RBP11.88□□□□□ -0.51
USP47-207ENST00000527733 C5orf56Q8N8D9 126 aa11.88□□□□□ -0.51
USP47-207ENST00000527733 GGTLC3B5MD39 225 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 CDSNQ15517 529 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 PRDM13Q9H4Q3 707 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 IGLV11-55A0A075B6I3 123 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 K7EIM0 57 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 NDUFA3O95167 84 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 NMUP48645 174 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 C8orf86Q6ZUL3 223 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 RNF182Q8N6D2 247 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 C1QTNF4Q9BXJ3 329 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 ADCYAP1P18509 176 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 SSBP2P81877 361 aaPredicted RBP11.87□□□□□ -0.51
USP47-207ENST00000527733 TMEM95Q3KNT9 176 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 COLCA2A8K830 154 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 ADMP35318 185 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 ERCC8Q13216 396 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 C12orf54Q6X4T0 127 aa11.87□□□□□ -0.51
USP47-207ENST00000527733 I3L2K1 104 aa11.86□□□□□ -0.51
USP47-207ENST00000527733 OR10J3Q5JRS4 329 aa11.86□□□□□ -0.51
USP47-207ENST00000527733 CDH23Q9H251 3354 aa11.86□□□□□ -0.51
USP47-207ENST00000527733 INS-IGF2F8WCM5 200 aa11.86□□□□□ -0.51
USP47-207ENST00000527733 CXCL1P09341 107 aa11.86□□□□□ -0.51
USP47-207ENST00000527733 LYZL1Q6UWQ5 148 aa11.86□□□□□ -0.51
USP47-207ENST00000527733 SRSF9Q13242 221 aaKnown RBP eCLIP11.86□□□□□ -0.51
USP47-207ENST00000527733 TMEM75Q8N9X5 138 aa11.86□□□□□ -0.51
USP47-207ENST00000527733 ZNF256Q9Y2P7 627 aaPredicted RBP11.86□□□□□ -0.51
USP47-207ENST00000527733 CHD9Q3L8U1 2897 aa11.86□□□□□ -0.51
USP47-207ENST00000527733 IGHV7-4-1A0A0J9YVY3 117 aa11.85□□□□□ -0.51
USP47-207ENST00000527733 ATP5LO75964 103 aa11.85□□□□□ -0.51
USP47-207ENST00000527733 PKIAP61925 76 aa11.85□□□□□ -0.51
USP47-207ENST00000527733 VAMP3Q15836 100 aa11.85□□□□□ -0.51
USP47-207ENST00000527733 LRRK2Q5S007 2527 aa11.85□□□□□ -0.51
USP47-207ENST00000527733 HTN3P15516 51 aa11.85□□□□□ -0.51
USP47-207ENST00000527733 TMEM70Q9BUB7 260 aa11.85□□□□□ -0.51
USP47-207ENST00000527733 USP9YO00507 2555 aaPredicted RBP11.85□□□□□ -0.51
USP47-207ENST00000527733 FXYD5Q96DB9 178 aa11.85□□□□□ -0.51
USP47-207ENST00000527733 C18orf15Q96N68 181 aa11.85□□□□□ -0.51
USP47-207ENST00000527733 IGKV1-17P01599 117 aa11.85□□□□□ -0.51
USP47-207ENST00000527733 RPL35AP18077 110 aaKnown RBP11.85□□□□□ -0.51
USP47-207ENST00000527733 RASL11AQ6T310 242 aa11.85□□□□□ -0.51
USP47-207ENST00000527733 ST20Q9HBF5 79 aa11.85□□□□□ -0.51
USP47-207ENST00000527733 RPLP1P05386 114 aaKnown RBP11.84□□□□□ -0.51
USP47-207ENST00000527733 FOXE3Q13461 319 aa11.84□□□□□ -0.51
USP47-207ENST00000527733 WNK1Q9H4A3 2382 aa11.84□□□□□ -0.51
USP47-207ENST00000527733 ODF3BA8MYP8 253 aa11.84□□□□□ -0.51
USP47-207ENST00000527733 SERF1AO75920 110 aa11.84□□□□□ -0.51
USP47-207ENST00000527733 INSP01308 110 aa11.84□□□□□ -0.51
USP47-207ENST00000527733 NUP35Q8NFH5 326 aa11.84□□□□□ -0.51
USP47-207ENST00000527733 TEX22C9J3V5 150 aa11.84□□□□□ -0.51
USP47-207ENST00000527733 LGALS1P09382 135 aaKnown RBP11.84□□□□□ -0.51
USP47-207ENST00000527733 FXYD7P58549 80 aa11.84□□□□□ -0.51
USP47-207ENST00000527733 UTF1Q5T230 341 aa11.84□□□□□ -0.51
USP47-207ENST00000527733 ZNF414Q96IQ9 312 aa11.84□□□□□ -0.51
USP47-207ENST00000527733 USP9XQ93008 2570 aaPredicted RBP11.84□□□□□ -0.51
USP47-207ENST00000527733 EPG5Q9HCE0 2579 aa11.84□□□□□ -0.51
USP47-207ENST00000527733 HIST1H2BKO60814 126 aa11.83□□□□□ -0.51
USP47-207ENST00000527733 HIST1H2BJP06899 126 aa11.83□□□□□ -0.51
USP47-207ENST00000527733 HIST1H2BOP23527 126 aa11.83□□□□□ -0.51
USP47-207ENST00000527733 HIST1H2BBP33778 126 aa11.83□□□□□ -0.51
USP47-207ENST00000527733 TCTAP57738 103 aa11.83□□□□□ -0.51
USP47-207ENST00000527733 HIST1H2BDP58876 126 aa11.83□□□□□ -0.51
USP47-207ENST00000527733 HIST1H2BCP62807 126 aa11.83□□□□□ -0.51
USP47-207ENST00000527733 HIST2H2BEQ16778 126 aa11.83□□□□□ -0.51
USP47-207ENST00000527733 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.83□□□□□ -0.51
USP47-207ENST00000527733 HIST1H2BHQ93079 126 aa11.83□□□□□ -0.51
USP47-207ENST00000527733 RCHY1Q96PM5 261 aa11.83□□□□□ -0.51
USP47-207ENST00000527733 HIST1H2BNQ99877 126 aa11.83□□□□□ -0.51
USP47-207ENST00000527733 HIST1H2BMQ99879 126 aa11.83□□□□□ -0.51
USP47-207ENST00000527733 NXT2Q9NPJ8 142 aaKnown RBP11.83□□□□□ -0.51
USP47-207ENST00000527733 ZNF324O75467 553 aaPredicted RBP11.83□□□□□ -0.52
USP47-207ENST00000527733 SNCGO76070 127 aa11.83□□□□□ -0.52
USP47-207ENST00000527733 CRYGCP07315 174 aa11.83□□□□□ -0.52
USP47-207ENST00000527733 HOXA5P20719 270 aa11.83□□□□□ -0.52
USP47-207ENST00000527733 SCGB3A1Q96QR1 104 aa11.83□□□□□ -0.52
USP47-207ENST00000527733 TLN2Q9Y4G6 2542 aa11.83□□□□□ -0.52
USP47-207ENST00000527733 TNFRSF13BO14836 293 aaPredicted RBP11.83□□□□□ -0.52
USP47-207ENST00000527733 FAM19A2Q8N3H0 131 aa11.83□□□□□ -0.52
USP47-207ENST00000527733 GEMIN7Q9H840 131 aaKnown RBP11.83□□□□□ -0.52
USP47-207ENST00000527733 TMEM262E9PQX1 116 aa11.83□□□□□ -0.52
USP47-207ENST00000527733 ZNF415Q09FC8 603 aa11.83□□□□□ -0.52
USP47-207ENST00000527733 SMPXQ9UHP9 88 aa11.83□□□□□ -0.52
USP47-207ENST00000527733 KIAA1549Q9HCM3 1950 aa11.83□□□□□ -0.52
USP47-207ENST00000527733 TRGV4A0A0C4DH28 118 aa11.82□□□□□ -0.52
USP47-207ENST00000527733 ZNF492Q9P255 531 aa11.82□□□□□ -0.52
USP47-207ENST00000527733 ZNF462Q96JM2 2506 aa11.82□□□□□ -0.52
USP47-207ENST00000527733 P0C879 139 aa11.82□□□□□ -0.52
USP47-207ENST00000527733 UBE2E2Q96LR5 201 aa11.82□□□□□ -0.52
USP47-207ENST00000527733 TSSC4Q9Y5U2 329 aaPredicted RBP11.82□□□□□ -0.52
USP47-207ENST00000527733 E7EUB6 86 aa11.82□□□□□ -0.52
USP47-207ENST00000527733 IGHG2P01859 326 aa11.82□□□□□ -0.52
USP47-207ENST00000527733 HOXD3P31249 432 aaPredicted RBP11.82□□□□□ -0.52
USP47-207ENST00000527733 BRWD1-AS2P59051 145 aa11.81□□□□□ -0.52
USP47-207ENST00000527733 PRSS57Q6UWY2 283 aa11.81□□□□□ -0.52
USP47-207ENST00000527733 C11orf52Q96A22 123 aa11.81□□□□□ -0.52
USP47-207ENST00000527733 CTSGP08311 255 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms