RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 LCTP09848 1927 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 ABCA1O95477 2261 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 Q6ZS49 121 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 PNRC2Q9NPJ4 139 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 TRGV11A0A075B6L2 103 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 PINLYPA6NC86 204 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 TCRAP04437 139 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 DMRTC2Q8IXT2 367 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 SIPA1L1O43166 1804 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 CNOT1A5YKK6 2376 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 LOC285556D6RIA3 1793 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 PSPNO60542 156 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 LAGE3Q14657 143 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 ETDBQ3ZM63 59 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 CRIPAKQ8N1N5 446 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 GLMPQ8WWB7 406 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 PLEKHB2Q96CS7 222 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 SPRR3Q9UBC9 169 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 IGHV3-64A0A075B6Q5 118 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 TRAV13-1A0A0B4J241 112 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 CD28P10747 220 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 MALP21145 153 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 RPL32P62910 135 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 C10orf55Q5SWW7 151 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 A0A0G2JMZ2 1700 aa8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 LRRC37A2A6NM11 1700 aa8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 NPIPB5A8MRT5 1133 aa8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 RPRMLQ8N4K4 120 aa8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 KNCNA6PVL3 124 aa8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 PMS2P5A8MQ11 134 aa8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 LCN12Q6JVE5 192 aa8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 COLCA1Q6ZS62 124 aa8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 SYS1-DBNDD2H3BUS1 97 aa8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 FOXG1P55316 489 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 DOCK6Q96HP0 2047 aa8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 CFHR1Q03591 330 aa8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 RNF5Q99942 180 aa8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 SLC25A39Q9BZJ4 359 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 TP53BP1Q12888 1972 aaPredicted RBP8.42□□□□□ -1.06
LIMCH1-203ENST00000396595 D6R8Y8 96 aa8.41□□□□□ -1.06
LIMCH1-203ENST00000396595 PAX8Q06710 450 aa8.41□□□□□ -1.06
LIMCH1-203ENST00000396595 MPDZO75970 2070 aa8.41□□□□□ -1.06
LIMCH1-203ENST00000396595 LINC00158P58513 81 aa8.41□□□□□ -1.06
LIMCH1-203ENST00000396595 TMEM243Q9BU79 118 aa8.41□□□□□ -1.06
LIMCH1-203ENST00000396595 CD24P25063 80 aa8.41□□□□□ -1.06
LIMCH1-203ENST00000396595 UBL5Q9BZL1 73 aa8.41□□□□□ -1.06
LIMCH1-203ENST00000396595 PRDM6Q9NQX0 595 aa8.41□□□□□ -1.06
LIMCH1-203ENST00000396595 NTN3O00634 580 aaPredicted RBP8.41□□□□□ -1.06
LIMCH1-203ENST00000396595 WNT2P09544 360 aa8.41□□□□□ -1.06
LIMCH1-203ENST00000396595 ZCCHC24Q8N2G6 241 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-203ENST00000396595 PRADC1Q9BSG0 188 aa8.41□□□□□ -1.06
LIMCH1-203ENST00000396595 SCRT1Q9BWW7 348 aa8.41□□□□□ -1.06
LIMCH1-203ENST00000396595 LSM4Q9Y4Z0 139 aaKnown RBP8.41□□□□□ -1.06
LIMCH1-203ENST00000396595 A0A0U1RRA0 63 aa8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 ADCYAP1P18509 176 aa8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 C17orf82Q86X59 251 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 NUP35Q8NFH5 326 aa8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 MESP1Q9BRJ9 268 aa8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 CASP8AP2Q9UKL3 1982 aa8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 RFNGQ9Y644 331 aa8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 PRB3Q04118 309 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 SIGLEC15Q6ZMC9 328 aa8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 C15orf53Q8NAA6 179 aa8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 PRSS22Q9GZN4 317 aa8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 FNDC10F2Z333 226 aa8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 THBDP07204 575 aa8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 LCNL1Q6ZST4 164 aa8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 EXOC3-AS1Q8N2X6 119 aa8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 MED12Q93074 2177 aa8.4□□□□□ -1.06
LIMCH1-203ENST00000396595 IGKV2-40A0A087WW87 121 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-203ENST00000396595 IGHV2-26A0A0B4J1V2 119 aa8.4□□□□□ -1.07
LIMCH1-203ENST00000396595 IGKV2D-40P01614 121 aaPredicted RBP8.4□□□□□ -1.07
LIMCH1-203ENST00000396595 NTF4P34130 210 aa8.4□□□□□ -1.07
LIMCH1-203ENST00000396595 TCF15Q12870 199 aa8.4□□□□□ -1.07
LIMCH1-203ENST00000396595 LYZL1Q6UWQ5 148 aa8.4□□□□□ -1.07
LIMCH1-203ENST00000396595 JPT2Q9H910 190 aa8.4□□□□□ -1.07
LIMCH1-203ENST00000396595 OOSP1A8MZH6 123 aa8.4□□□□□ -1.07
LIMCH1-203ENST00000396595 CFPP27918 469 aa8.4□□□□□ -1.07
LIMCH1-203ENST00000396595 CDKN1AP38936 164 aa8.4□□□□□ -1.07
LIMCH1-203ENST00000396595 STHQ8IWL8 128 aa8.4□□□□□ -1.07
LIMCH1-203ENST00000396595 C15orf62A8K5M9 175 aa8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 CLPSP04118 112 aa8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 HERV-K104P63124 156 aa8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 MRPL23Q16540 153 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 ANXA2RQ3ZCQ2 193 aa8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 A0A1W2PPM0 123 aa8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 SUMO4Q6EEV6 95 aa8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 Q6P435 159 aa8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 LYPD1Q8N2G4 141 aa8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 CD177Q8N6Q3 437 aa8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 IGHV1-8P0DP01 117 aa8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 SPXQ9BT56 116 aa8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 TRAV3A0A0B4J244 114 aa8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 C5orf63A6NC05 138 aa8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 AMN1Q8IY45 258 aa8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 SPATA25Q9BR10 227 aa8.39□□□□□ -1.07
LIMCH1-203ENST00000396595 LRRK1Q38SD2 2015 aa8.38□□□□□ -1.07
LIMCH1-203ENST00000396595 LYNX1G3V0Z9 82 aa8.38□□□□□ -1.07
LIMCH1-203ENST00000396595 LEPROTO15243 131 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 178.6 ms