RNA–Protein interactions for RNA: YOR216C

RUD3, Transcript of Golgi matrix protein, yeast

Gene RUD3, Length 1,455 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUD3	YOR216C	PPN1	Q04119	674 aa		3.42	□□□□□ -1.86
RUD3	YOR216C	GFD1	Q04839	188 aa	Known RBP	3.42	□□□□□ -1.86
RUD3	YOR216C	YCP4	P25349	247 aa	Known RBP	3.41	□□□□□ -1.86
RUD3	YOR216C	NUP82	P40368	713 aa		3.41	□□□□□ -1.86
RUD3	YOR216C	BUD6	P41697	788 aa		3.41	□□□□□ -1.86
RUD3	YOR216C	RPN4	Q03465	531 aa		3.41	□□□□□ -1.86
RUD3	YOR216C	HLR1	Q04429	423 aa		3.41	□□□□□ -1.86
RUD3	YOR216C	TPO3	Q06451	622 aa		3.41	□□□□□ -1.86
RUD3	YOR216C	PCL8	Q08966	492 aa		3.41	□□□□□ -1.86
RUD3	YOR216C	HOP1	P20050	605 aa		3.41	□□□□□ -1.86
RUD3	YOR216C	ATO2	P32907	282 aa		3.41	□□□□□ -1.86
RUD3	YOR216C	DHR2	P36009	735 aa	Predicted RBP	3.41	□□□□□ -1.86
RUD3	YOR216C	COP1	P53622	1201 aa	Known RBP	3.41	□□□□□ -1.86
RUD3	YOR216C	WAR1	Q03631	944 aa		3.41	□□□□□ -1.86
RUD3	YOR216C	ENT2	Q05785	613 aa		3.41	□□□□□ -1.86
RUD3	YOR216C	TGS1	Q12052	315 aa		3.41	□□□□□ -1.86
RUD3	YOR216C	PHO2	P07269	559 aa		3.4	□□□□□ -1.87
RUD3	YOR216C	LOT5	P34234	306 aa		3.4	□□□□□ -1.87
RUD3	YOR216C	BRN1	P38170	754 aa		3.4	□□□□□ -1.87
RUD3	YOR216C	LYS20	P48570	428 aa	Known RBP	3.4	□□□□□ -1.87
RUD3	YOR216C	MET13	P53128	600 aa		3.4	□□□□□ -1.87
RUD3	YOR216C	SNA4	Q07549	140 aa		3.4	□□□□□ -1.87
RUD3	YOR216C	YLR125W	Q12138	136 aa		3.4	□□□□□ -1.87
RUD3	YOR216C	YOL098C	Q12496	1037 aa		3.4	□□□□□ -1.87
RUD3	YOR216C	RPS17A	P02407	136 aa	Known RBP	3.39	□□□□□ -1.87
RUD3	YOR216C	SWI6	P09959	803 aa		3.39	□□□□□ -1.87
RUD3	YOR216C	PHO8	P11491	566 aa		3.39	□□□□□ -1.87
RUD3	YOR216C	RPS17B	P14127	136 aa	Known RBP	3.39	□□□□□ -1.87
RUD3	YOR216C	YJU2	P28320	278 aa	Predicted RBP	3.39	□□□□□ -1.87
RUD3	YOR216C	BFA1	P47113	574 aa		3.39	□□□□□ -1.87
RUD3	YOR216C	NNF1	P47149	201 aa		3.39	□□□□□ -1.87
RUD3	YOR216C	RPL15B	P54780	204 aa	Predicted RBP	3.39	□□□□□ -1.87
RUD3	YOR216C	HRD3	Q05787	833 aa		3.39	□□□□□ -1.87
RUD3	YOR216C	DUN1	P39009	513 aa		3.38	□□□□□ -1.87
RUD3	YOR216C	TAF4	P50105	388 aa		3.38	□□□□□ -1.87
RUD3	YOR216C	YPL071C	Q02864	156 aa		3.38	□□□□□ -1.87
RUD3	YOR216C	GUD1	Q07729	489 aa		3.38	□□□□□ -1.87
RUD3	YOR216C	YLR001C	Q07895	862 aa		3.38	□□□□□ -1.87
RUD3	YOR216C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	3.38	□□□□□ -1.87	not detected
RUD3	YOR216C	AIM44	Q99299	758 aa		3.38	□□□□□ -1.87
RUD3	YOR216C	YEL076C-A	P0CX16	216 aa		3.37	□□□□□ -1.87
RUD3	YOR216C	YLR464W	P0CX17	216 aa		3.37	□□□□□ -1.87
RUD3	YOR216C	CAP1	P28495	268 aa	Known RBP	3.37	□□□□□ -1.87
RUD3	YOR216C	CCL1	P37366	393 aa		3.37	□□□□□ -1.87
RUD3	YOR216C	YEL076C	P39971	216 aa		3.37	□□□□□ -1.87
RUD3	YOR216C	YEL025C	P39991	1188 aa		3.37	□□□□□ -1.87
RUD3	YOR216C	IRC7	P43623	340 aa		3.37	□□□□□ -1.87
RUD3	YOR216C	USA1	Q03714	838 aa		3.37	□□□□□ -1.87
RUD3	YOR216C	AIM17	P23180	465 aa	Known RBP	3.36	□□□□□ -1.87
RUD3	YOR216C	YKL091C	P33324	310 aa	Known RBP	3.36	□□□□□ -1.87
RUD3	YOR216C	DED81	P38707	554 aa	Known RBP	3.36	□□□□□ -1.87
RUD3	YOR216C	PRM2	P40534	656 aa		3.36	□□□□□ -1.87
RUD3	YOR216C	NOP7	P53261	605 aa	Known RBP	3.36	□□□□□ -1.87
RUD3	YOR216C	NOP15	P53927	220 aa	Predicted RBP	3.36	□□□□□ -1.87
RUD3	YOR216C	ARR3	Q06598	404 aa		3.36	□□□□□ -1.87
RUD3	YOR216C	THI4	P32318	326 aa		3.35	□□□□□ -1.87
RUD3	YOR216C	EHT1	P38295	451 aa		3.35	□□□□□ -1.87
RUD3	YOR216C	LRO1	P40345	661 aa		3.35	□□□□□ -1.87
RUD3	YOR216C	NSE5	Q03718	556 aa		3.35	□□□□□ -1.87
RUD3	YOR216C	ACO1	P19414	778 aa	Known RBP RIP-Chip data	3.35	□□□□□ -1.87	not detected
RUD3	YOR216C	YIL092W	P40497	633 aa		3.35	□□□□□ -1.87
RUD3	YOR216C	IES1	P43579	692 aa		3.35	□□□□□ -1.87
RUD3	YOR216C	AAT1	Q01802	451 aa		3.35	□□□□□ -1.87
RUD3	YOR216C	NTG2	Q08214	380 aa		3.35	□□□□□ -1.87
RUD3	YOR216C	MTC7	P32633	139 aa		3.34	□□□□□ -1.88
RUD3	YOR216C	SDS24	P38314	527 aa		3.34	□□□□□ -1.88
RUD3	YOR216C	MDV1	P47025	714 aa		3.34	□□□□□ -1.88
RUD3	YOR216C	GND1	P38720	489 aa	Known RBP	3.33	□□□□□ -1.88
RUD3	YOR216C	YIL152W	P40455	235 aa		3.33	□□□□□ -1.88
RUD3	YOR216C	RET2	P43621	546 aa		3.33	□□□□□ -1.88
RUD3	YOR216C	YDL183C	P48569	320 aa		3.33	□□□□□ -1.88
RUD3	YOR216C	CYK3	Q07533	885 aa		3.33	□□□□□ -1.88
RUD3	YOR216C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	3.33	□□□□□ -1.88	not detected
RUD3	YOR216C	AHA1	Q12449	350 aa	Known RBP	3.33	□□□□□ -1.88
RUD3	YOR216C	BI2	P03873	423 aa		3.32	□□□□□ -1.88
RUD3	YOR216C	AAC1	P04710	309 aa		3.32	□□□□□ -1.88
RUD3	YOR216C	COQ3	P27680	312 aa		3.32	□□□□□ -1.88
RUD3	YOR216C	TDA3	P38758	523 aa		3.32	□□□□□ -1.88
RUD3	YOR216C	YIR016W	P40572	265 aa		3.32	□□□□□ -1.88
RUD3	YOR216C	YCG1	Q06680	1035 aa		3.32	□□□□□ -1.88
RUD3	YOR216C	GRS2	Q06817	618 aa		3.32	□□□□□ -1.88
RUD3	YOR216C	AIM41	Q12032	185 aa		3.32	□□□□□ -1.88
RUD3	YOR216C	YCR043C	P25361	127 aa		3.31	□□□□□ -1.88
RUD3	YOR216C	RTT107	P38850	1070 aa		3.31	□□□□□ -1.88
RUD3	YOR216C	RPS21B	Q3E754	87 aa	Known RBP	3.31	□□□□□ -1.88
RUD3	YOR216C	YOX1	P34161	385 aa		3.3	□□□□□ -1.88
RUD3	YOR216C	IMD2	P38697	523 aa	Known RBP	3.3	□□□□□ -1.88
RUD3	YOR216C	MTG2	P38860	518 aa		3.3	□□□□□ -1.88
RUD3	YOR216C	MET30	P39014	640 aa		3.3	□□□□□ -1.88
RUD3	YOR216C	IMD3	P50095	523 aa	Known RBP	3.3	□□□□□ -1.88
RUD3	YOR216C	BOP3	P53958	396 aa		3.3	□□□□□ -1.88
RUD3	YOR216C	NRT1	Q08485	598 aa		3.3	□□□□□ -1.88
RUD3	YOR216C	PNO1	Q99216	274 aa	Known RBP	3.3	□□□□□ -1.88
RUD3	YOR216C	YPK1	P12688	680 aa	Known RBP	3.29	□□□□□ -1.88
RUD3	YOR216C	GLN4	P13188	809 aa	Known RBP	3.29	□□□□□ -1.88
RUD3	YOR216C	RPT3	P33298	428 aa	Known RBP	3.29	□□□□□ -1.88
RUD3	YOR216C	MGS1	P40151	587 aa		3.29	□□□□□ -1.88
RUD3	YOR216C	UBX3	Q12229	455 aa		3.29	□□□□□ -1.88
RUD3	YOR216C	CET1	O13297	549 aa	Predicted RBP	3.28	□□□□□ -1.88
RUD3	YOR216C	GAL4	P04386	881 aa		3.28	□□□□□ -1.88

Retrieved 100 of 5,963 RNA–protein pairs in 19.3 ms