RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C PPN1Q04119 674 aa3.42□□□□□ -1.86
RTR1YER139C YPT1P01123 206 aaKnown RBP3.41□□□□□ -1.86
RTR1YER139C YEL076C-AP0CX16 216 aa3.41□□□□□ -1.86
RTR1YER139C YLR464WP0CX17 216 aa3.41□□□□□ -1.86
RTR1YER139C HOP1P20050 605 aa3.41□□□□□ -1.86
RTR1YER139C PEX6P33760 1030 aa3.41□□□□□ -1.86
RTR1YER139C YEL076CP39971 216 aa3.41□□□□□ -1.86
RTR1YER139C CFD1P40558 293 aa3.41□□□□□ -1.86
RTR1YER139C RPL15BP54780 204 aaPredicted RBP3.41□□□□□ -1.86
RTR1YER139C SCW10Q04951 389 aa3.41□□□□□ -1.86
RTR1YER139C STP4Q07351 490 aa3.41□□□□□ -1.86
RTR1YER139C PCL8Q08966 492 aa3.41□□□□□ -1.86
RTR1YER139C TGS1Q12052 315 aa3.41□□□□□ -1.86
RTR1YER139C DHR2P36009 735 aaPredicted RBP3.4□□□□□ -1.87
RTR1YER139C WAR1Q03631 944 aa3.4□□□□□ -1.87
RTR1YER139C HLR1Q04429 423 aa3.4□□□□□ -1.87
RTR1YER139C AIM44Q99299 758 aa3.4□□□□□ -1.87
RTR1YER139C MSH2P25847 964 aa3.39□□□□□ -1.87
RTR1YER139C YPT10P38146 199 aa3.39□□□□□ -1.87
RTR1YER139C BRN1P38170 754 aa3.39□□□□□ -1.87
RTR1YER139C CDS1P38221 457 aa3.39□□□□□ -1.87
RTR1YER139C UGO1Q03327 502 aa3.38□□□□□ -1.87
RTR1YER139C MRN1Q08925 612 aaKnown RBP RIP-Chip data3.38□□□□□ -1.87not detected
RTR1YER139C CAP1P28495 268 aaKnown RBP3.37□□□□□ -1.87
RTR1YER139C CCL1P37366 393 aa3.37□□□□□ -1.87
RTR1YER139C PBP2P38151 413 aaKnown RBP RIP-Chip data3.37□□□□□ -1.87not detected
RTR1YER139C DUN1P39009 513 aa3.37□□□□□ -1.87
RTR1YER139C YEL025CP39991 1188 aa3.37□□□□□ -1.87
RTR1YER139C YIL092WP40497 633 aa3.37□□□□□ -1.87
RTR1YER139C IRC7P43623 340 aa3.37□□□□□ -1.87
RTR1YER139C BFA1P47113 574 aa3.37□□□□□ -1.87
RTR1YER139C TAF4P50105 388 aa3.37□□□□□ -1.87
RTR1YER139C RPS17AP02407 136 aaKnown RBP3.36□□□□□ -1.87
RTR1YER139C PHO2P07269 559 aa3.36□□□□□ -1.87
RTR1YER139C RPS17BP14127 136 aaKnown RBP3.36□□□□□ -1.87
RTR1YER139C ACO1P19414 778 aaKnown RBP RIP-Chip data3.36□□□□□ -1.87not detected
RTR1YER139C AIM17P23180 465 aaKnown RBP3.36□□□□□ -1.87
RTR1YER139C YJU2P28320 278 aaPredicted RBP3.36□□□□□ -1.87
RTR1YER139C EHT1P38295 451 aa3.36□□□□□ -1.87
RTR1YER139C NUP82P40368 713 aa3.36□□□□□ -1.87
RTR1YER139C PRM2P40534 656 aa3.36□□□□□ -1.87
RTR1YER139C RPN4Q03465 531 aa3.36□□□□□ -1.87
RTR1YER139C USA1Q03714 838 aa3.36□□□□□ -1.87
RTR1YER139C HRD3Q05787 833 aa3.36□□□□□ -1.87
RTR1YER139C YLR125WQ12138 136 aa3.36□□□□□ -1.87
RTR1YER139C PUF2Q12221 1075 aaKnown RBP RIP-Chip data3.36□□□□□ -1.87not detected
RTR1YER139C BI2P03873 423 aa3.35□□□□□ -1.87
RTR1YER139C SWI6P09959 803 aa3.35□□□□□ -1.87
RTR1YER139C COQ3P27680 312 aa3.35□□□□□ -1.87
RTR1YER139C GND1P38720 489 aaKnown RBP3.35□□□□□ -1.87
RTR1YER139C YIR016WP40572 265 aa3.35□□□□□ -1.87
RTR1YER139C MDV1P47025 714 aa3.35□□□□□ -1.87
RTR1YER139C NOP15P53927 220 aaPredicted RBP3.35□□□□□ -1.87
RTR1YER139C CYK3Q07533 885 aa3.35□□□□□ -1.87
RTR1YER139C PHO8P11491 566 aa3.34□□□□□ -1.87
RTR1YER139C ARR3Q06598 404 aa3.34□□□□□ -1.87
RTR1YER139C GUD1Q07729 489 aa3.34□□□□□ -1.87
RTR1YER139C AHA1Q12449 350 aaKnown RBP3.34□□□□□ -1.87
RTR1YER139C DED81P38707 554 aaKnown RBP3.33□□□□□ -1.88
RTR1YER139C LRO1P40345 661 aa3.33□□□□□ -1.88
RTR1YER139C YIL152WP40455 235 aa3.33□□□□□ -1.88
RTR1YER139C BUD6P41697 788 aa3.33□□□□□ -1.88
RTR1YER139C MET13P53128 600 aa3.33□□□□□ -1.88
RTR1YER139C NSE5Q03718 556 aa3.33□□□□□ -1.88
RTR1YER139C YCR043CP25361 127 aa3.32□□□□□ -1.88
RTR1YER139C RPT3P33298 428 aaKnown RBP3.32□□□□□ -1.88
RTR1YER139C AAT1Q01802 451 aa3.32□□□□□ -1.88
RTR1YER139C YCG1Q06680 1035 aa3.32□□□□□ -1.88
RTR1YER139C GRS2Q06817 618 aa3.32□□□□□ -1.88
RTR1YER139C YLR001CQ07895 862 aa3.32□□□□□ -1.88
RTR1YER139C NRT1Q08485 598 aa3.32□□□□□ -1.88
RTR1YER139C YOL098CQ12496 1037 aa3.32□□□□□ -1.88
RTR1YER139C THI4P32318 326 aa3.31□□□□□ -1.88
RTR1YER139C YKL091CP33324 310 aaKnown RBP3.31□□□□□ -1.88
RTR1YER139C SDS24P38314 527 aa3.31□□□□□ -1.88
RTR1YER139C MTG2P38860 518 aa3.31□□□□□ -1.88
RTR1YER139C IES1P43579 692 aa3.31□□□□□ -1.88
RTR1YER139C YDL183CP48569 320 aa3.31□□□□□ -1.88
RTR1YER139C BOP3P53958 396 aa3.31□□□□□ -1.88
RTR1YER139C NTG2Q08214 380 aa3.31□□□□□ -1.88
RTR1YER139C DSE3Q08729 430 aa3.31□□□□□ -1.88
RTR1YER139C AIM41Q12032 185 aa3.31□□□□□ -1.88
RTR1YER139C PNO1Q99216 274 aaKnown RBP3.31□□□□□ -1.88
RTR1YER139C AAC1P04710 309 aa3.3□□□□□ -1.88
RTR1YER139C MTC7P32633 139 aa3.3□□□□□ -1.88
RTR1YER139C RET2P43621 546 aa3.3□□□□□ -1.88
RTR1YER139C NNF1P47149 201 aa3.3□□□□□ -1.88
RTR1YER139C YGL260WP53056 76 aa3.3□□□□□ -1.88
RTR1YER139C NOP7P53261 605 aaKnown RBP3.3□□□□□ -1.88
RTR1YER139C SNU56Q03782 492 aaKnown RBP3.3□□□□□ -1.88
RTR1YER139C GAL4P04386 881 aa3.29□□□□□ -1.88
RTR1YER139C YOX1P34161 385 aa3.29□□□□□ -1.88
RTR1YER139C ARC40P38328 384 aaKnown RBP3.29□□□□□ -1.88
RTR1YER139C TDA3P38758 523 aa3.29□□□□□ -1.88
RTR1YER139C TES1P41903 349 aaKnown RBP3.29□□□□□ -1.88
RTR1YER139C UBX3Q12229 455 aa3.29□□□□□ -1.88
RTR1YER139C CET1O13297 549 aaPredicted RBP3.28□□□□□ -1.88
RTR1YER139C GLN4P13188 809 aaKnown RBP3.28□□□□□ -1.88
RTR1YER139C FTH1P38310 465 aa3.28□□□□□ -1.88
RTR1YER139C IMD2P38697 523 aaKnown RBP3.28□□□□□ -1.88
Retrieved 100 of 5,963 RNA–protein pairs in 86.6 ms