RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 C2orf70A6NJV1 201 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 SLC25A5P05141 298 aaKnown RBP10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 RPL19P84098 196 aaKnown RBP10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 OR1B1Q8NGR6 318 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 ZNF714Q96N38 554 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 PSMB11A5LHX3 300 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 UQCRFS1P47985 274 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 WT1-ASQ06250 92 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 TMEM116Q8NCL8 245 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 ORAOV1Q8WV07 137 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 FLYWCH2Q96CP2 140 aaKnown RBP10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 FAM167A-AS1Q96KT0 104 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 FNDC4Q9H6D8 234 aaPredicted RBP10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 SAP30LQ9HAJ7 183 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 TPSG1Q9NRR2 321 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 TRAV9-1A0A075B6T8 112 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 IGLV2-23P01705 113 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 TNFRSF1AP19438 455 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 TAS2R45P59539 299 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 CD69Q07108 199 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 MRGPRG-AS1Q2M3A8 158 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 PATE2Q6UY27 113 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 OR8B3Q8NGG8 313 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 OR1L8Q8NGR8 309 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 H1FXQ92522 213 aaKnown RBP10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 JKAMPQ9P055 326 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 ZNF835Q9Y2P0 537 aa10.09□□□□□ -0.79
SFSWAP-208ENST00000539506 MUC6Q6W4X9 2439 aa10.08□□□□□ -0.8
SFSWAP-208ENST00000539506 IGHV2-26A0A0B4J1V2 119 aa10.08□□□□□ -0.8
SFSWAP-208ENST00000539506 IGLC7A0M8Q6 106 aa10.08□□□□□ -0.8
SFSWAP-208ENST00000539506 GAL3ST2Q9H3Q3 398 aa10.08□□□□□ -0.8
SFSWAP-208ENST00000539506 PPIAL4EA0A075B759 164 aa10.08□□□□□ -0.8
SFSWAP-208ENST00000539506 PPIAL4DF5H284 164 aa10.08□□□□□ -0.8
SFSWAP-208ENST00000539506 PEX7O00628 323 aa10.08□□□□□ -0.8
SFSWAP-208ENST00000539506 PPIAL4FP0DN26 164 aa10.08□□□□□ -0.8
SFSWAP-208ENST00000539506 TMEM177Q53S58 311 aa10.08□□□□□ -0.8
SFSWAP-208ENST00000539506 TEX45Q8NA69 505 aa10.08□□□□□ -0.8
SFSWAP-208ENST00000539506 OSR1Q8TAX0 266 aaPredicted RBP10.08□□□□□ -0.8
SFSWAP-208ENST00000539506 MEF2CQ06413 473 aaPredicted RBP10.07□□□□□ -0.8
SFSWAP-208ENST00000539506 LINC00305Q7Z4B0 112 aa10.07□□□□□ -0.8
SFSWAP-208ENST00000539506 COMMD5Q9GZQ3 224 aa10.07□□□□□ -0.8
SFSWAP-208ENST00000539506 PRRG2O14669 202 aa10.07□□□□□ -0.8
SFSWAP-208ENST00000539506 DLX6P56179 175 aa10.07□□□□□ -0.8
SFSWAP-208ENST00000539506 C10orf113Q5VZT2 155 aa10.07□□□□□ -0.8
SFSWAP-208ENST00000539506 ZNF329Q86UD4 541 aa10.07□□□□□ -0.8
SFSWAP-208ENST00000539506 MBD6Q96DN6 1003 aa10.07□□□□□ -0.8
SFSWAP-208ENST00000539506 TMEM70Q9BUB7 260 aa10.07□□□□□ -0.8
SFSWAP-208ENST00000539506 LOXP28300 417 aaPredicted RBP10.07□□□□□ -0.8
SFSWAP-208ENST00000539506 TMEM30BQ3MIR4 351 aa10.07□□□□□ -0.8
SFSWAP-208ENST00000539506 ZNF430Q9H8G1 570 aaPredicted RBP10.07□□□□□ -0.8
SFSWAP-208ENST00000539506 LY96Q9Y6Y9 160 aa10.07□□□□□ -0.8
SFSWAP-208ENST00000539506 ENSAO43768 121 aaKnown RBP10.06□□□□□ -0.8
SFSWAP-208ENST00000539506 FAM87AP0C7U9 286 aa10.06□□□□□ -0.8
SFSWAP-208ENST00000539506 SAPCD1Q5SSQ6 148 aa10.06□□□□□ -0.8
SFSWAP-208ENST00000539506 IGFBPL1Q8WX77 278 aa10.06□□□□□ -0.8
SFSWAP-208ENST00000539506 IGKV1D-37A0A075B6S9 117 aa10.06□□□□□ -0.8
SFSWAP-208ENST00000539506 SHISA9B4DS77 424 aa10.06□□□□□ -0.8
SFSWAP-208ENST00000539506 E7EQL1 145 aa10.06□□□□□ -0.8
SFSWAP-208ENST00000539506 CIARTQ8N365 385 aaPredicted RBP10.06□□□□□ -0.8
SFSWAP-208ENST00000539506 OR10X1Q8NGY0 326 aa10.06□□□□□ -0.8
SFSWAP-208ENST00000539506 GTSF1Q8WW33 167 aa10.06□□□□□ -0.8
SFSWAP-208ENST00000539506 RNASE6Q93091 150 aaKnown RBP10.06□□□□□ -0.8
SFSWAP-208ENST00000539506 ABCA4P78363 2273 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 TLN1Q9Y490 2541 aaKnown RBP10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 IGHV1-24A0A0C4DH33 117 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 LEPROTL1O95214 131 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 APOA2P02652 100 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 MRPL52Q86TS9 123 aaKnown RBP10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 A0A1W2PRE2 83 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 CIDEAO60543 219 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 FSTL3O95633 263 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 GFRALQ6UXV0 394 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 MUC15Q8N387 334 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 TMEM167AQ8TBQ9 72 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 PTPRZ1P23471 2315 aaPredicted RBP10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 LOC389332A0A1B0GUA5 103 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 DLL1O00548 723 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 WFDC3Q8IUB2 231 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 PNKDQ8N490 385 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 OR4C13Q8NGP0 309 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 GRAMD2BQ96HH9 432 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 CHODLQ9H9P2 273 aa10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 MRPS16Q9Y3D3 137 aaKnown RBP10.05□□□□□ -0.8
SFSWAP-208ENST00000539506 TAX1BP3O14907 124 aa10.04□□□□□ -0.8
SFSWAP-208ENST00000539506 RIPPLY3P57055 190 aa10.04□□□□□ -0.8
SFSWAP-208ENST00000539506 TMUB1Q9BVT8 246 aa10.04□□□□□ -0.8
SFSWAP-208ENST00000539506 IGHV1-69-2A0A0G2JMI3 117 aa10.04□□□□□ -0.8
SFSWAP-208ENST00000539506 NDUFB3O43676 98 aa10.04□□□□□ -0.8
SFSWAP-208ENST00000539506 SLC25A17O43808 307 aa10.04□□□□□ -0.8
SFSWAP-208ENST00000539506 CNTFRP26992 372 aa10.04□□□□□ -0.8
SFSWAP-208ENST00000539506 S4R3C0 116 aa10.04□□□□□ -0.8
SFSWAP-208ENST00000539506 TMSB15BA0A087X1C1 80 aa10.03□□□□□ -0.8
SFSWAP-208ENST00000539506 IGHV2-70DA0A0C4DH43 119 aa10.03□□□□□ -0.8
SFSWAP-208ENST00000539506 A0A1W2PPI3 338 aa10.03□□□□□ -0.8
SFSWAP-208ENST00000539506 LYNX1G3V0Z9 82 aa10.03□□□□□ -0.8
SFSWAP-208ENST00000539506 SYS1-DBNDD2H3BUS1 97 aa10.03□□□□□ -0.8
SFSWAP-208ENST00000539506 FAM106CPP0CH98 169 aa10.03□□□□□ -0.8
SFSWAP-208ENST00000539506 LYNX1P0DP58 116 aa10.03□□□□□ -0.8
SFSWAP-208ENST00000539506 ERHP84090 104 aaKnown RBP10.03□□□□□ -0.8
SFSWAP-208ENST00000539506 FAM106AQ4KMX7 169 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 129.1 ms