RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 UHRF2Q96PU4 802 aa4.86□□□□□ -1.63
LIG3-206ENST00000586058 MDFIQ99750 246 aa4.86□□□□□ -1.63
LIG3-206ENST00000586058 VSIRQ9H7M9 311 aa4.86□□□□□ -1.63
LIG3-206ENST00000586058 DNAJC4Q9NNZ3 241 aa4.86□□□□□ -1.63
LIG3-206ENST00000586058 VAX2Q9UIW0 290 aa4.86□□□□□ -1.63
LIG3-206ENST00000586058 CRYBG3Q68DQ2 2970 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 F8W036 122 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 TGOLN2O43493 480 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 YIF1AO95070 293 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 NDUFB8O95169 186 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 BRI3O95415 125 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 HSPB1P04792 205 aaKnown RBP4.85□□□□□ -1.63
LIG3-206ENST00000586058 IGLC1P0CG04 106 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 STAG3L2P0CL84 134 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 STAG3L3P0CL85 134 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 FCGR2BP31994 310 aaPredicted RBP4.85□□□□□ -1.63
LIG3-206ENST00000586058 ARL3P36405 182 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 CEBPGP53567 150 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 MEF2BQ02080 365 aaPredicted RBP4.85□□□□□ -1.63
LIG3-206ENST00000586058 ZNF90Q03938 601 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 HAGHQ16775 308 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 TIGITQ495A1 244 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 ANKRD39Q53RE8 183 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 KHDC1LQ5JSQ8 128 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 SAMD5Q5TGI4 173 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 CLEC19AQ6UXS0 136 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 RPP25LQ8N5L8 163 aaKnown RBP4.85□□□□□ -1.63
LIG3-206ENST00000586058 OR4F17Q8NGA8 305 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 OR5AU1Q8NGC0 362 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 OR4F5Q8NH21 305 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 TMEM190Q8WZ59 177 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 GRAMD2BQ96HH9 432 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 FANCD2OSQ96PS1 177 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 OR4F4Q96R69 305 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 NKX6-2Q9C056 277 aaPredicted RBP4.85□□□□□ -1.63
LIG3-206ENST00000586058 RABAC1Q9UI14 185 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 LINC00527Q9UJ94 153 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 ARL2-SNX15V9GYD0 113 aa4.85□□□□□ -1.63
LIG3-206ENST00000586058 ABCA1O95477 2261 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 IGKV1D-37A0A075B6S9 117 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 IGKV1OR2-108A0A075B7D4 117 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 TRBV9A0A0B4J1U6 114 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 LOC102723971A0A1B0GUV8 181 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.84□□□□□ -1.63
LIG3-206ENST00000586058 F6UZH7 168 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 CLDN34H7C241 214 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 HMGB3O15347 200 aaKnown RBP4.84□□□□□ -1.63
LIG3-206ENST00000586058 PDE6DO43924 150 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 SNAPINO95295 136 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 OR2C1O95371 312 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 IGHV3-23P01764 117 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 AMY1AP04745 511 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 ELANEP08246 267 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 SFTA3P0C7M3 94 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 EGR2P11161 476 aaPredicted RBP4.84□□□□□ -1.63
LIG3-206ENST00000586058 PSG1P11464 419 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 GATA2P23769 480 aaPredicted RBP4.84□□□□□ -1.63
LIG3-206ENST00000586058 GCHFRP30047 84 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 PLP1P60201 277 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 BLCAPP62952 87 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 FOXE3Q13461 319 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 MLANAQ16655 118 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 C21orf62-AS1Q17RA5 79 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 ZNF506Q5JVG8 444 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 CST9LP1Q5W188 147 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 BPIFA4PQ86YQ2 179 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 SVBPQ8N300 66 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 ZNF502Q8TBZ5 544 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 NOL4LQ96MY1 436 aaPredicted RBP4.84□□□□□ -1.63
LIG3-206ENST00000586058 GPR82Q96P67 336 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 DUX5Q96PT3 197 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 METTL26Q96S19 204 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 PAXXQ9BUH6 204 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 KRTAP9-2Q9BYQ4 174 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 SLC35B3Q9H1N7 401 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 TMEM231Q9H6L2 316 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 DMRT1Q9Y5R6 373 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 RFNGQ9Y644 331 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 SOX21Q9Y651 276 aaPredicted RBP4.84□□□□□ -1.63
LIG3-206ENST00000586058 S4R3C0 116 aa4.84□□□□□ -1.63
LIG3-206ENST00000586058 SPG11Q96JI7 2443 aa4.84□□□□□ -1.64
LIG3-206ENST00000586058 PTPN13Q12923 2485 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 C11orf94C9JXX5 98 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 M0QZ24 198 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 TCF21O43680 179 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 NDUFS6O75380 124 aaKnown RBP4.83□□□□□ -1.64
LIG3-206ENST00000586058 LY6G6DO95868 133 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 IGHG4P01861 327 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 APOC3P02656 99 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 CLEC3BP05452 202 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 RNASE1P07998 156 aaKnown RBP4.83□□□□□ -1.64
LIG3-206ENST00000586058 RPL7P18124 248 aaKnown RBP4.83□□□□□ -1.64
LIG3-206ENST00000586058 HILS1P60008 231 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 UBE2G2P60604 165 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 DEFA5Q01523 94 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 KRTAP1-1Q07627 177 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 ZNF726P1Q15940 193 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 RPEL1Q2QD12 228 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 KLK9Q2XQG4 91 aa4.83□□□□□ -1.64
LIG3-206ENST00000586058 C19orf54Q5BKX5 351 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms