RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 RALGAPA2Q2PPJ7 1873 aa12.24□□□□□ -0.45
CHD4-201ENST00000357008 TCRAP04437 139 aa12.24□□□□□ -0.45
CHD4-201ENST00000357008 ADCYAP1P18509 176 aa12.24□□□□□ -0.45
CHD4-201ENST00000357008 CKS1BP61024 79 aa12.24□□□□□ -0.45
CHD4-201ENST00000357008 TMEM42Q69YG0 159 aa12.24□□□□□ -0.45
CHD4-201ENST00000357008 C7orf69Q9H7B7 122 aa12.24□□□□□ -0.45
CHD4-201ENST00000357008 TIMM23O14925 209 aa12.24□□□□□ -0.45
CHD4-201ENST00000357008 CD28P10747 220 aa12.24□□□□□ -0.45
CHD4-201ENST00000357008 GUSBP1Q15486 140 aa12.24□□□□□ -0.45
CHD4-201ENST00000357008 RPRMLQ8N4K4 120 aa12.24□□□□□ -0.45
CHD4-201ENST00000357008 FAM168AQ92567 244 aa12.24□□□□□ -0.45
CHD4-201ENST00000357008 FREM3P0C091 2139 aa12.24□□□□□ -0.45
CHD4-201ENST00000357008 IGKV3D-20A0A0C4DH25 116 aa12.24□□□□□ -0.45
CHD4-201ENST00000357008 PMS2P5A8MQ11 134 aa12.24□□□□□ -0.45
CHD4-201ENST00000357008 ZNF664Q8N3J9 261 aa12.24□□□□□ -0.45
CHD4-201ENST00000357008 GTSCR1Q86UQ5 136 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 PNRC2Q9NPJ4 139 aaKnown RBP12.23□□□□□ -0.45
CHD4-201ENST00000357008 GBF1Q92538 1859 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 PSPNO60542 156 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 IGHV1-46P01743 117 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 UBE2V1Q13404 147 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 GGNQ86UU5 652 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 NUP35Q8NFH5 326 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 DPH3Q96FX2 82 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 TRGV9Q99603 122 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 SBF2Q86WG5 1849 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 SRSF6Q13247 344 aaKnown RBP12.23□□□□□ -0.45
CHD4-201ENST00000357008 ATXN8Q156A1 80 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 CSRP2Q16527 193 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 PINLYPA6NC86 204 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 SLC25A20O43772 301 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 PSG1P11464 419 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 CD24P25063 80 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 PRB3Q04118 309 aaPredicted RBP12.23□□□□□ -0.45
CHD4-201ENST00000357008 LCN12Q6JVE5 192 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 SLC25A39Q9BZJ4 359 aaPredicted RBP12.23□□□□□ -0.45
CHD4-201ENST00000357008 NPFFR1Q9GZQ6 430 aa12.23□□□□□ -0.45
CHD4-201ENST00000357008 MPV17L2Q567V2 206 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 C10orf55Q5SWW7 151 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 COLCA1Q6ZS62 124 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 TRGV11A0A075B6L2 103 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 ABHD17AQ96GS6 310 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 BRCA1P38398 1863 aaKnown RBP12.22□□□□□ -0.45
CHD4-201ENST00000357008 hDV102S1A0JD36 115 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 GAGE2BQ13066 116 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 GAGE2EQ4V326 116 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 MBNL3Q9NUK0 354 aaKnown RBP12.22□□□□□ -0.45
CHD4-201ENST00000357008 GAGE2DQ9UEU5 116 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 TMEM238C9JI98 176 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 Q6ZS49 121 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 EXOC3-AS1Q8N2X6 119 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 NYNRINQ9P2P1 1898 aaKnown RBP12.22□□□□□ -0.45
CHD4-201ENST00000357008 AKAP6Q13023 2319 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 ARHGEF17Q96PE2 2063 aaPredicted RBP12.22□□□□□ -0.45
CHD4-201ENST00000357008 SYS1-DBNDD2H3BUS1 97 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 FAM90A2PQ658T7 463 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 LYZL1Q6UWQ5 148 aa12.22□□□□□ -0.45
CHD4-201ENST00000357008 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.21□□□□□ -0.45
CHD4-201ENST00000357008 ZCCHC24Q8N2G6 241 aaKnown RBP12.21□□□□□ -0.45
CHD4-201ENST00000357008 SPRR3Q9UBC9 169 aa12.21□□□□□ -0.45
CHD4-201ENST00000357008 A0A1B0GWJ7 208 aa12.21□□□□□ -0.45
CHD4-201ENST00000357008 NDUFS6O75380 124 aaKnown RBP12.21□□□□□ -0.45
CHD4-201ENST00000357008 NCR2O95944 276 aa12.21□□□□□ -0.45
CHD4-201ENST00000357008 FOXG1P55316 489 aaPredicted RBP12.21□□□□□ -0.45
CHD4-201ENST00000357008 ZFP36L1Q07352 338 aaKnown RBP12.21□□□□□ -0.45
CHD4-201ENST00000357008 DMRTC2Q8IXT2 367 aaPredicted RBP12.21□□□□□ -0.45
CHD4-201ENST00000357008 RNASE6Q93091 150 aaKnown RBP12.21□□□□□ -0.45
CHD4-201ENST00000357008 PSME4Q14997 1843 aa12.21□□□□□ -0.45
CHD4-201ENST00000357008 M0R2P5 195 aa12.21□□□□□ -0.45
CHD4-201ENST00000357008 PAX8Q06710 450 aa12.21□□□□□ -0.45
CHD4-201ENST00000357008 NAA38Q9BRA0 125 aaKnown RBP12.21□□□□□ -0.45
CHD4-201ENST00000357008 SCRT1Q9BWW7 348 aa12.21□□□□□ -0.46
CHD4-201ENST00000357008 IGKV2-40A0A087WW87 121 aaPredicted RBP12.21□□□□□ -0.46
CHD4-201ENST00000357008 IGKV2D-40P01614 121 aaPredicted RBP12.21□□□□□ -0.46
CHD4-201ENST00000357008 NTF4P34130 210 aa12.21□□□□□ -0.46
CHD4-201ENST00000357008 MESP1Q9BRJ9 268 aa12.21□□□□□ -0.46
CHD4-201ENST00000357008 LTBRP36941 435 aa12.2□□□□□ -0.46
CHD4-201ENST00000357008 A0A087X0K7 114 aa12.2□□□□□ -0.46
CHD4-201ENST00000357008 KLF17Q5JT82 389 aaPredicted RBP12.2□□□□□ -0.46
CHD4-201ENST00000357008 SIGLEC15Q6ZMC9 328 aa12.2□□□□□ -0.46
CHD4-201ENST00000357008 PDCD11Q14690 1871 aaKnown RBP12.2□□□□□ -0.46
CHD4-201ENST00000357008 ZFAND6Q6FIF0 208 aa12.2□□□□□ -0.46
CHD4-201ENST00000357008 MORN3Q6PF18 240 aaPredicted RBP12.2□□□□□ -0.46
CHD4-201ENST00000357008 PLXNA1Q9UIW2 1896 aa12.2□□□□□ -0.46
CHD4-201ENST00000357008 TRAV3A0A0B4J244 114 aa12.19□□□□□ -0.46
CHD4-201ENST00000357008 GGTLC3B5MD39 225 aa12.19□□□□□ -0.46
CHD4-201ENST00000357008 C11orf68Q9H3H3 251 aaKnown RBP12.19□□□□□ -0.46
CHD4-201ENST00000357008 RNF144BQ7Z419 303 aa12.19□□□□□ -0.46
CHD4-201ENST00000357008 LHFPL4Q7Z7J7 247 aa12.19□□□□□ -0.46
CHD4-201ENST00000357008 LURAP1LQ8IV03 231 aa12.19□□□□□ -0.46
CHD4-201ENST00000357008 RNF5Q99942 180 aa12.19□□□□□ -0.46
CHD4-201ENST00000357008 LOC285556D6RIA3 1793 aa12.19□□□□□ -0.46
CHD4-201ENST00000357008 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.19□□□□□ -0.46
CHD4-201ENST00000357008 GFRA3O60609 400 aa12.19□□□□□ -0.46
CHD4-201ENST00000357008 CFHR1Q03591 330 aa12.19□□□□□ -0.46
CHD4-201ENST00000357008 CEP250Q9BV73 2442 aa12.19□□□□□ -0.46
CHD4-201ENST00000357008 MLNRO43193 412 aa12.19□□□□□ -0.46
CHD4-201ENST00000357008 MALP21145 153 aa12.19□□□□□ -0.46
CHD4-201ENST00000357008 CRIPAKQ8N1N5 446 aa12.19□□□□□ -0.46
CHD4-201ENST00000357008 C5orf63A6NC05 138 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 103.4 ms