RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 XAGE1AQ9HD64 81 aa1.65□□□□□ -2.15
SCFD1-221ENST00000556534 FBXL12Q9NXK8 326 aa1.65□□□□□ -2.15
SCFD1-221ENST00000556534 IL36BQ9NZH7 164 aa1.65□□□□□ -2.15
SCFD1-221ENST00000556534 SZT2Q5T011 3432 aa1.65□□□□□ -2.15
SCFD1-221ENST00000556534 TARBP1Q13395 1621 aaKnown RBP1.65□□□□□ -2.15
SCFD1-221ENST00000556534 ADCY10Q96PN6 1610 aa1.65□□□□□ -2.15
SCFD1-221ENST00000556534 ADGRB3O60242 1522 aa1.65□□□□□ -2.15
SCFD1-221ENST00000556534 UHRF1BP1Q6BDS2 1440 aa1.65□□□□□ -2.15
SCFD1-221ENST00000556534 RIMS1Q86UR5 1692 aaKnown RBP1.64□□□□□ -2.15
SCFD1-221ENST00000556534 PREX1Q8TCU6 1659 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 TRANK1O15050 2925 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 CFTRP13569 1480 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 NEO1Q92859 1461 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 KIF1BO60333 1816 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 OR7C1O76099 320 aaPredicted RBP1.64□□□□□ -2.15
SCFD1-221ENST00000556534 SERPINA7P05543 415 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 HLA-DMBP28068 263 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 CCR2P41597 374 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 CCL20P78556 96 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 GLO1Q04760 184 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 KRTAP13-4Q3LI77 160 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 HACD4Q5VWC8 232 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 AGTRAPQ6RW13 159 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 PXT1Q8NFP0 134 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 OR51A2Q8NGJ7 313 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 IMMP2LQ96T52 175 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 CMSS1Q9BQ75 279 aaKnown RBP1.64□□□□□ -2.15
SCFD1-221ENST00000556534 Q9BRP9 147 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 RSL24D1Q9UHA3 163 aaKnown RBP1.64□□□□□ -2.15
SCFD1-221ENST00000556534 TIMM22Q9Y584 194 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 TMEM56-RWDD3S4R434 201 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 SHROOM2Q13796 1616 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 MAP3K4Q9Y6R4 1608 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 CUX1P39880 1505 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 KDM5BQ9UGL1 1544 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 PRG4Q92954 1404 aaPredicted RBP1.64□□□□□ -2.15
SCFD1-221ENST00000556534 TTC21AQ8NDW8 1320 aa1.64□□□□□ -2.15
SCFD1-221ENST00000556534 SHANK2Q9UPX8 1470 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 SORL1Q92673 2214 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 CACNA1GO43497 2377 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 COL6A3P12111 3177 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 CPS1P31327 1500 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 A0A0J9YW62 118 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 EXOC1LA0A1B0GW35 172 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 H3BT86 120 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 PDE6DO43924 150 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 PRM2P04554 102 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 LGALS1P09382 135 aaKnown RBP1.63□□□□□ -2.15
SCFD1-221ENST00000556534 NEFHP12036 1026 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 DEFA4P12838 97 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 CBR1P16152 277 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 RPL28P46779 137 aaKnown RBP1.63□□□□□ -2.15
SCFD1-221ENST00000556534 EVX1P49640 407 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 AP1S1P61966 158 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 AKR1C1Q04828 323 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 KISS1Q15726 138 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 ZNF181Q2M3W8 571 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 C12orf74Q32Q52 190 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 LIN52Q52LA3 116 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 C9orf64Q5T6V5 341 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 DHRS4L2Q6PKH6 230 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 Q6ZS52 159 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 ZNF767PQ75MW2 155 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 C12orf45Q8N5I9 185 aaPredicted RBP1.63□□□□□ -2.15
SCFD1-221ENST00000556534 C9orf16Q9BUW7 83 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 UQCC1Q9NVA1 299 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 PRO2289Q9P1D8 64 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 HHLA3Q9XRX5 114 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 FAM135BQ49AJ0 1406 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 VCANP13611 3396 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 ECM29Q5VYK3 1845 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 PEG3Q9GZU2 1588 aa1.63□□□□□ -2.15
SCFD1-221ENST00000556534 KIAA0556O60303 1618 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 SPTBN5Q9NRC6 3674 aaKnown RBP1.62□□□□□ -2.15
SCFD1-221ENST00000556534 STRCP1A6NGW2 1772 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 PDE4DIPQ5VU43 2346 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 MYH7BA7E2Y1 1941 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 MAGI3Q5TCQ9 1506 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 TOPBP1Q92547 1522 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 GGT3PA6NGU5 568 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 SIGLEC16A6NMB1 481 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 C2orf74A8MZ97 194 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 ZNF682O95780 498 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 CRYZL1O95825 349 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 UCHL1P09936 223 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 HIST1H2BOP23527 126 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 HIST1H2BBP33778 126 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 HIST1H2BDP58876 126 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 TPI1P60174 286 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 RAB14P61106 215 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 HIST1H2BCP62807 126 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 HBA1P69905 142 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 NUMA1Q14980 2115 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 HIST2H2BEQ16778 126 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.62□□□□□ -2.15
SCFD1-221ENST00000556534 AADACL3Q5VUY0 350 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 OOSP2Q86WS3 158 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 DYNAPQ8N1N2 210 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 GDPD1Q8N9F7 314 aa1.62□□□□□ -2.15
SCFD1-221ENST00000556534 HIST1H2BHQ93079 126 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms