RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPT8	YLR055C	JEM1	P40358	645 aa		11.48	□□□□□ -0.57
SPT8	YLR055C	RSM26	P47141	266 aa		11.48	□□□□□ -0.57
SPT8	YLR055C	YML6	P51998	286 aa		11.48	□□□□□ -0.57
SPT8	YLR055C	SHE10	P53075	577 aa		11.48	□□□□□ -0.57
SPT8	YLR055C	HOP2	P53187	214 aa		11.48	□□□□□ -0.57
SPT8	YLR055C	COS6	P53344	381 aa		11.48	□□□□□ -0.57
SPT8	YLR055C	ECM7	Q06200	448 aa		11.48	□□□□□ -0.57
SPT8	YLR055C	KAR4	P25583	335 aa		11.47	□□□□□ -0.57
SPT8	YLR055C	PYC2	P32327	1180 aa	Known RBP	11.47	□□□□□ -0.57
SPT8	YLR055C	PUP2	P32379	260 aa		11.47	□□□□□ -0.57
SPT8	YLR055C	SKG6	P32900	734 aa	Predicted RBP	11.47	□□□□□ -0.57
SPT8	YLR055C	LIA1	P47120	325 aa	Known RBP	11.47	□□□□□ -0.57
SPT8	YLR055C	TRS130	Q03660	1102 aa		11.47	□□□□□ -0.57
SPT8	YLR055C	RSA3	Q05942	220 aa	Known RBP	11.47	□□□□□ -0.57
SPT8	YLR055C	FUB1	P25659	250 aa		11.46	□□□□□ -0.57
SPT8	YLR055C	RPL5	P26321	297 aa	Known RBP	11.46	□□□□□ -0.57
SPT8	YLR055C	COY1	P34237	679 aa		11.46	□□□□□ -0.57
SPT8	YLR055C	WHI3	P34761	661 aa	Known RBP	11.46	□□□□□ -0.57
SPT8	YLR055C	GRS1	P38088	690 aa	Known RBP	11.46	□□□□□ -0.57
SPT8	YLR055C	PMC1	P38929	1173 aa	Predicted RBP	11.46	□□□□□ -0.57
SPT8	YLR055C	PFK26	P40433	827 aa	Known RBP	11.46	□□□□□ -0.57
SPT8	YLR055C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	11.46	□□□□□ -0.57	RIP-Chip
SPT8	YLR055C	USE1	P53146	245 aa		11.46	□□□□□ -0.57
SPT8	YLR055C	RPA49	Q01080	415 aa	Predicted RBP	11.46	□□□□□ -0.57
SPT8	YLR055C	ZPS1	Q12512	249 aa		11.46	□□□□□ -0.57
SPT8	YLR055C	TAO3	P40468	2376 aa		11.46	□□□□□ -0.58
SPT8	YLR055C	CBF2	P32504	956 aa		11.46	□□□□□ -0.58
SPT8	YLR055C	CDC27	P38042	758 aa		11.46	□□□□□ -0.58
SPT8	YLR055C	ASN1	P49089	572 aa	Known RBP	11.46	□□□□□ -0.58
SPT8	YLR055C	HSH155	P49955	971 aa	Known RBP	11.46	□□□□□ -0.58
SPT8	YLR055C	INP52	P50942	1183 aa		11.46	□□□□□ -0.58
SPT8	YLR055C	KTR5	P53966	522 aa	Predicted RBP	11.46	□□□□□ -0.58
SPT8	YLR055C	YLR053C	Q12026	108 aa		11.46	□□□□□ -0.58
SPT8	YLR055C	ENO2	P00925	437 aa	Known RBP	11.45	□□□□□ -0.58
SPT8	YLR055C	RAD10	P06838	210 aa		11.45	□□□□□ -0.58
SPT8	YLR055C	ADE3	P07245	946 aa	Known RBP	11.45	□□□□□ -0.58
SPT8	YLR055C	TUB3	P09734	445 aa	Known RBP	11.45	□□□□□ -0.58
SPT8	YLR055C	VMA1	P17255	1071 aa	Known RBP	11.45	□□□□□ -0.58
SPT8	YLR055C	AAD3	P25612	363 aa		11.45	□□□□□ -0.58
SPT8	YLR055C	MRX3	P38172	270 aa		11.45	□□□□□ -0.58
SPT8	YLR055C	BEM4	P39011	633 aa		11.45	□□□□□ -0.58
SPT8	YLR055C	RGD2	P43556	714 aa		11.45	□□□□□ -0.58
SPT8	YLR055C	RNR4	P49723	345 aa	Known RBP	11.45	□□□□□ -0.58
SPT8	YLR055C	YNL134C	P53912	376 aa	Known RBP	11.45	□□□□□ -0.58
SPT8	YLR055C	SHS1	Q07657	551 aa		11.45	□□□□□ -0.58
SPT8	YLR055C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	11.45	□□□□□ -0.58	not detected
SPT8	YLR055C	RUP1	Q12242	671 aa		11.45	□□□□□ -0.58
SPT8	YLR055C	TAL1	P15019	335 aa	Known RBP	11.44	□□□□□ -0.58
SPT8	YLR055C	ADE2	P21264	571 aa	Known RBP	11.44	□□□□□ -0.58
SPT8	YLR055C	MRM1	P25270	412 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	BUD2	P33314	1104 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	CSG2	P35206	410 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	MMS4	P38257	691 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	PCA1	P38360	1216 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	SMF2	P38778	549 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	NPP2	P39997	493 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	LAM5	P43560	674 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	PHO86	P46956	311 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	GCV2	P49095	1034 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	CEF1	Q03654	590 aa	Predicted RBP	11.44	□□□□□ -0.58
SPT8	YLR055C	DOT1	Q04089	582 aa	Known RBP	11.44	□□□□□ -0.58
SPT8	YLR055C	ADE4	P04046	510 aa	Known RBP	11.44	□□□□□ -0.58
SPT8	YLR055C	HEM3	P28789	327 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	11.44	□□□□□ -0.58	not detected
SPT8	YLR055C	BRL1	P38770	471 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	MKT1	P40850	830 aa	Known RBP	11.44	□□□□□ -0.58
SPT8	YLR055C	CPR7	P47103	393 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	FOL2	P51601	243 aa	Known RBP	11.44	□□□□□ -0.58
SPT8	YLR055C	NOP15	P53927	220 aa	Predicted RBP	11.44	□□□□□ -0.58
SPT8	YLR055C	OSH6	Q02201	448 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	STE20	Q03497	939 aa	Known RBP	11.44	□□□□□ -0.58
SPT8	YLR055C	ACL4	Q03771	387 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	FMN1	Q03778	218 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	ERV41	Q04651	352 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	IVY1	Q04934	453 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	RGA2	Q06407	1009 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	TRE1	Q08919	783 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	PCD1	Q12524	340 aa		11.44	□□□□□ -0.58
SPT8	YLR055C	SSC1	P0CS90	654 aa	Known RBP	11.43	□□□□□ -0.58
SPT8	YLR055C	GLN3	P18494	730 aa		11.43	□□□□□ -0.58
SPT8	YLR055C	SEG2	P34250	1132 aa		11.43	□□□□□ -0.58
SPT8	YLR055C	SCS2	P40075	244 aa	Known RBP	11.43	□□□□□ -0.58
SPT8	YLR055C	YDR018C	Q12185	396 aa		11.43	□□□□□ -0.58
SPT8	YLR055C	COX4	P04037	155 aa		11.42	□□□□□ -0.58
SPT8	YLR055C	RPS3	P05750	240 aa	Known RBP	11.42	□□□□□ -0.58
SPT8	YLR055C	ECM4	P36156	370 aa		11.42	□□□□□ -0.58
SPT8	YLR055C	TAF1	P46677	1066 aa		11.42	□□□□□ -0.58
SPT8	YLR055C	PRM6	Q04705	352 aa		11.42	□□□□□ -0.58
SPT8	YLR055C	CDC73	Q06697	393 aa		11.42	□□□□□ -0.58
SPT8	YLR055C	UBR2	Q07963	1872 aa		11.42	□□□□□ -0.58
SPT8	YLR055C	ILS1	P09436	1072 aa	Known RBP	11.42	□□□□□ -0.58
SPT8	YLR055C	RNR1	P21524	888 aa	Known RBP	11.42	□□□□□ -0.58
SPT8	YLR055C	CAD1	P24813	409 aa	Known RBP	11.42	□□□□□ -0.58
SPT8	YLR055C	NPP1	P25353	742 aa		11.42	□□□□□ -0.58
SPT8	YLR055C	MCM5	P29496	775 aa	Known RBP	11.42	□□□□□ -0.58
SPT8	YLR055C	UBX7	P38349	436 aa		11.42	□□□□□ -0.58
SPT8	YLR055C	YHL008C	P38750	627 aa		11.42	□□□□□ -0.58
SPT8	YLR055C	SPO74	P45819	413 aa		11.42	□□□□□ -0.58
SPT8	YLR055C	ALT2	P52892	507 aa		11.42	□□□□□ -0.58
SPT8	YLR055C	TBF1	Q02457	562 aa		11.42	□□□□□ -0.58

Retrieved 100 of 5,963 RNA–protein pairs in 37.7 ms