RNA–Protein interactions for RNA: YKL007W

CAP1, Transcript of Alpha subunit of the capping protein heterodimer (Cap1p and Cap2p), yeast

Gene CAP1, Length 807 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAP1	YKL007W	IZH3	Q07959	543 aa		4.22	□□□□□ -1.73
CAP1	YKL007W	LAM4	P38800	1345 aa		4.21	□□□□□ -1.73
CAP1	YKL007W	GLN4	P13188	809 aa	Known RBP	4.21	□□□□□ -1.74
CAP1	YKL007W	PRE4	P30657	266 aa		4.21	□□□□□ -1.74
CAP1	YKL007W	DGR2	P32330	852 aa		4.21	□□□□□ -1.74
CAP1	YKL007W	YMC2	P38087	329 aa		4.21	□□□□□ -1.74
CAP1	YKL007W	UBP12	P39538	1254 aa		4.21	□□□□□ -1.74
CAP1	YKL007W	ATG36	P46983	293 aa		4.21	□□□□□ -1.74
CAP1	YKL007W	IMO32	P53219	342 aa		4.21	□□□□□ -1.74
CAP1	YKL007W	COQ11	Q05892	277 aa		4.21	□□□□□ -1.74
CAP1	YKL007W	AIM41	Q12032	185 aa		4.21	□□□□□ -1.74
CAP1	YKL007W	MDM20	Q12387	796 aa	Known RBP	4.21	□□□□□ -1.74
CAP1	YKL007W	BNR1	P40450	1375 aa		4.21	□□□□□ -1.74
CAP1	YKL007W	RPA135	P22138	1203 aa	Known RBP	4.2	□□□□□ -1.74
CAP1	YKL007W	VID28	P40547	921 aa		4.2	□□□□□ -1.74
CAP1	YKL007W	PMT6	P42934	759 aa		4.2	□□□□□ -1.74
CAP1	YKL007W	RNR4	P49723	345 aa	Known RBP	4.2	□□□□□ -1.74
CAP1	YKL007W	LGE1	Q02796	332 aa	Known RBP	4.2	□□□□□ -1.74
CAP1	YKL007W	RMP1	Q12530	201 aa		4.2	□□□□□ -1.74
CAP1	YKL007W	YNL162W-A	Q3E7A8	72 aa		4.2	□□□□□ -1.74
CAP1	YKL007W	TUF1	P02992	437 aa	Known RBP	4.19	□□□□□ -1.74
CAP1	YKL007W	RPS21A	P0C0V8	87 aa	Known RBP	4.19	□□□□□ -1.74
CAP1	YKL007W	MF(ALPHA)2	P32435	120 aa		4.19	□□□□□ -1.74
CAP1	YKL007W	DHR2	P36009	735 aa	Predicted RBP	4.19	□□□□□ -1.74
CAP1	YKL007W	ELF1	P36053	145 aa		4.19	□□□□□ -1.74
CAP1	YKL007W	FAT1	P38225	669 aa		4.19	□□□□□ -1.74
CAP1	YKL007W	YHR033W	P38690	423 aa		4.19	□□□□□ -1.74
CAP1	YKL007W	TMN3	P40071	706 aa		4.19	□□□□□ -1.74
CAP1	YKL007W	SKY1	Q03656	742 aa		4.19	□□□□□ -1.74
CAP1	YKL007W	SAT4	P25333	603 aa	Known RBP	4.18	□□□□□ -1.74
CAP1	YKL007W	UGP1	P32861	499 aa	Known RBP	4.18	□□□□□ -1.74
CAP1	YKL007W	PIH1	P38768	344 aa		4.18	□□□□□ -1.74
CAP1	YKL007W	PPE1	P38796	400 aa		4.18	□□□□□ -1.74
CAP1	YKL007W	PMC1	P38929	1173 aa	Predicted RBP	4.18	□□□□□ -1.74
CAP1	YKL007W	YEL025C	P39991	1188 aa		4.18	□□□□□ -1.74
CAP1	YKL007W	PRM2	P40534	656 aa		4.18	□□□□□ -1.74
CAP1	YKL007W	SNF12	P53628	566 aa		4.18	□□□□□ -1.74
CAP1	YKL007W	YDR179W-A	Q03983	463 aa		4.18	□□□□□ -1.74
CAP1	YKL007W	TRE2	Q08693	809 aa		4.18	□□□□□ -1.74
CAP1	YKL007W	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	4.18	□□□□□ -1.74	not detected
CAP1	YKL007W	PHO5	P00635	467 aa		4.17	□□□□□ -1.74
CAP1	YKL007W	TPK2	P06245	380 aa		4.17	□□□□□ -1.74
CAP1	YKL007W	ADE5,7	P07244	802 aa	Known RBP	4.17	□□□□□ -1.74
CAP1	YKL007W	CDC26	P14724	124 aa		4.17	□□□□□ -1.74
CAP1	YKL007W	AEP2	P22136	580 aa		4.17	□□□□□ -1.74
CAP1	YKL007W	VPS34	P22543	875 aa		4.17	□□□□□ -1.74
CAP1	YKL007W	PEX2	P32800	271 aa		4.17	□□□□□ -1.74
CAP1	YKL007W	FLO10	P36170	1169 aa		4.17	□□□□□ -1.74
CAP1	YKL007W	CRG1	P38892	291 aa	RIP-Chip data	4.17	□□□□□ -1.74	not detected
CAP1	YKL007W	FTR1	P40088	404 aa		4.17	□□□□□ -1.74
CAP1	YKL007W	GPP2	P40106	250 aa	Known RBP	4.17	□□□□□ -1.74
CAP1	YKL007W	YPR027C	Q12079	277 aa		4.17	□□□□□ -1.74
CAP1	YKL007W	STE12	P13574	688 aa		4.16	□□□□□ -1.74
CAP1	YKL007W	SRP68	P38687	599 aa	Known RBP	4.16	□□□□□ -1.74
CAP1	YKL007W	MIT1	P40002	666 aa		4.16	□□□□□ -1.74
CAP1	YKL007W	YEN1	P40028	759 aa		4.16	□□□□□ -1.74
CAP1	YKL007W	YGR054W	P53235	642 aa	Known RBP	4.16	□□□□□ -1.74
CAP1	YKL007W	YCG1	Q06680	1035 aa		4.16	□□□□□ -1.74
CAP1	YKL007W	YDL073W	Q07454	984 aa		4.16	□□□□□ -1.74
CAP1	YKL007W	STE4	P18851	423 aa		4.15	□□□□□ -1.75
CAP1	YKL007W	CAP1	P28495	268 aa	Known RBP	4.15	□□□□□ -1.75
CAP1	YKL007W	EUG1	P32474	517 aa		4.15	□□□□□ -1.75
CAP1	YKL007W	GRX4	P32642	244 aa		4.15	□□□□□ -1.75
CAP1	YKL007W	ORC2	P32833	620 aa		4.15	□□□□□ -1.75
CAP1	YKL007W	CDS1	P38221	457 aa		4.15	□□□□□ -1.75
CAP1	YKL007W	EMP65	P40085	556 aa		4.15	□□□□□ -1.75
CAP1	YKL007W	ASN1	P49089	572 aa	Known RBP	4.15	□□□□□ -1.75
CAP1	YKL007W	SPC105	P53148	917 aa		4.15	□□□□□ -1.75
CAP1	YKL007W	SQS1	P53866	767 aa	Known RBP	4.15	□□□□□ -1.75
CAP1	YKL007W	MFM1	Q02783	413 aa		4.15	□□□□□ -1.75
CAP1	YKL007W	EFR3	Q03653	782 aa	Known RBP	4.15	□□□□□ -1.75
CAP1	YKL007W	YPL216W	Q08964	1102 aa		4.15	□□□□□ -1.75
CAP1	YKL007W	HMG2	P12684	1045 aa		4.14	□□□□□ -1.75
CAP1	YKL007W	TUP1	P16649	713 aa		4.14	□□□□□ -1.75
CAP1	YKL007W	LOT5	P34234	306 aa		4.14	□□□□□ -1.75
CAP1	YKL007W	RIM4	P38741	713 aa		4.14	□□□□□ -1.75
CAP1	YKL007W	PEA2	P40091	420 aa		4.14	□□□□□ -1.75
CAP1	YKL007W	NIT2	P47016	307 aa		4.14	□□□□□ -1.75
CAP1	YKL007W	SLD3	P53135	668 aa		4.14	□□□□□ -1.75
CAP1	YKL007W	CPR8	P53728	308 aa		4.14	□□□□□ -1.75
CAP1	YKL007W	TRS23	Q03784	219 aa		4.14	□□□□□ -1.75
CAP1	YKL007W	MRI1	Q06489	411 aa	Known RBP	4.14	□□□□□ -1.75
CAP1	YKL007W	NGL1	Q08213	363 aa	Known RBP	4.14	□□□□□ -1.75
CAP1	YKL007W	TGS1	Q12052	315 aa		4.14	□□□□□ -1.75
CAP1	YKL007W	ULA1	Q12059	462 aa		4.14	□□□□□ -1.75
CAP1	YKL007W	ZPS1	Q12512	249 aa		4.14	□□□□□ -1.75
CAP1	YKL007W	HOM2	P13663	365 aa	Known RBP	4.13	□□□□□ -1.75
CAP1	YKL007W	CNE1	P27825	502 aa		4.13	□□□□□ -1.75
CAP1	YKL007W	HXT4	P32467	576 aa		4.13	□□□□□ -1.75
CAP1	YKL007W	MTC7	P32633	139 aa		4.13	□□□□□ -1.75
CAP1	YKL007W	MRPL7	P36519	292 aa		4.13	□□□□□ -1.75
CAP1	YKL007W	LRO1	P40345	661 aa		4.13	□□□□□ -1.75
CAP1	YKL007W	YIP4	P53093	235 aa		4.13	□□□□□ -1.75
CAP1	YKL007W	YGL117W	P53133	265 aa		4.13	□□□□□ -1.75
CAP1	YKL007W	PEF1	P53238	335 aa		4.13	□□□□□ -1.75
CAP1	YKL007W	TIM50	Q02776	476 aa		4.13	□□□□□ -1.75
CAP1	YKL007W	FMP30	Q02883	468 aa		4.13	□□□□□ -1.75
CAP1	YKL007W	GFD1	Q04839	188 aa	Known RBP	4.13	□□□□□ -1.75
CAP1	YKL007W	SEC12	P11655	471 aa		4.12	□□□□□ -1.75
CAP1	YKL007W	HOP1	P20050	605 aa		4.12	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 9.4 ms