RNA–Protein interactions for RNA: YJR028W

YJR028W, Transcript of Retrotransposon TYA Gag gene co-transcribed with TYB Pol, yeast

Gene YJR028W, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YJR028W	YJR028W	KIN82	P25341	720 aa		5.24	□□□□□ -1.57
YJR028W	YJR028W	FRD1	P32614	470 aa	Known RBP	5.24	□□□□□ -1.57
YJR028W	YJR028W	TAF5	P38129	798 aa		5.24	□□□□□ -1.57
YJR028W	YJR028W	YBR053C	P38235	358 aa		5.24	□□□□□ -1.57
YJR028W	YJR028W	CRG1	P38892	291 aa	RIP-Chip data	5.24	□□□□□ -1.57	not detected
YJR028W	YJR028W	CTK1	Q03957	528 aa	Known RBP	5.24	□□□□□ -1.57
YJR028W	YJR028W	TFC6	Q06339	672 aa		5.24	□□□□□ -1.57
YJR028W	YJR028W	NCP1	P16603	691 aa	Known RBP	5.23	□□□□□ -1.57
YJR028W	YJR028W	SIR1	P21691	654 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	RPA135	P22138	1203 aa	Known RBP	5.23	□□□□□ -1.57
YJR028W	YJR028W	ARG1	P22768	420 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	STE11	P23561	717 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	MCM3	P24279	971 aa	Known RBP	5.23	□□□□□ -1.57
YJR028W	YJR028W	CAD1	P24813	409 aa	Known RBP	5.23	□□□□□ -1.57
YJR028W	YJR028W	YCL049C	P25577	312 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	FTR1	P40088	404 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	YIR042C	P40586	236 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	BNA1	P47096	177 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	TAH11	P47112	604 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	MCH5	Q08777	521 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	MTF2	P10849	440 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	PRP6	P19735	899 aa	Predicted RBP	5.23	□□□□□ -1.57
YJR028W	YJR028W	DCG1	P32460	244 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	PSY4	P38193	441 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	FMO1	P38866	432 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	NUP60	P39705	539 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	PUG1	P40100	303 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	AMA1	P50082	593 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	MUP1	P50276	574 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	COG4	Q06096	861 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	TMA10	Q06177	86 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	YCG1	Q06680	1035 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	AAD4	Q07747	329 aa		5.23	□□□□□ -1.57
YJR028W	YJR028W	GLT1	Q12680	2145 aa	Known RBP	5.22	□□□□□ -1.57
YJR028W	YJR028W	TUP1	P16649	713 aa		5.22	□□□□□ -1.57
YJR028W	YJR028W	PRP45	P28004	379 aa	Predicted RBP	5.22	□□□□□ -1.57
YJR028W	YJR028W	MCM10	P32354	571 aa		5.22	□□□□□ -1.57
YJR028W	YJR028W	THI80	P35202	319 aa		5.22	□□□□□ -1.57
YJR028W	YJR028W	YBR138C	P38277	524 aa		5.22	□□□□□ -1.57
YJR028W	YJR028W	CCT3	P39077	534 aa	Known RBP	5.22	□□□□□ -1.57
YJR028W	YJR028W	ERP2	P39704	215 aa		5.22	□□□□□ -1.57
YJR028W	YJR028W	TAF1	P46677	1066 aa		5.22	□□□□□ -1.57
YJR028W	YJR028W	IML2	P47031	731 aa		5.22	□□□□□ -1.57
YJR028W	YJR028W	SQS1	P53866	767 aa	Known RBP	5.22	□□□□□ -1.57
YJR028W	YJR028W	ACS1	Q01574	713 aa		5.22	□□□□□ -1.57
YJR028W	YJR028W	FDC1	Q03034	503 aa		5.22	□□□□□ -1.57
YJR028W	YJR028W	YFT2	Q06676	274 aa		5.22	□□□□□ -1.57
YJR028W	YJR028W	OPY2	Q06810	360 aa		5.22	□□□□□ -1.57
YJR028W	YJR028W	DIA2	Q08496	732 aa	Predicted RBP	5.22	□□□□□ -1.57
YJR028W	YJR028W	RRI2	Q12348	645 aa		5.22	□□□□□ -1.57
YJR028W	YJR028W	TRM13	Q12383	476 aa		5.22	□□□□□ -1.57
YJR028W	YJR028W	YOL087C	Q99247	1116 aa		5.22	□□□□□ -1.57
YJR028W	YJR028W	PHO5	P00635	467 aa		5.21	□□□□□ -1.58
YJR028W	YJR028W	GAS1	P22146	559 aa	Known RBP	5.21	□□□□□ -1.58
YJR028W	YJR028W	FEN2	P25621	512 aa	Known RBP	5.21	□□□□□ -1.58
YJR028W	YJR028W	MSS1	P32559	526 aa	Predicted RBP	5.21	□□□□□ -1.58
YJR028W	YJR028W	BCS1	P32839	456 aa		5.21	□□□□□ -1.58
YJR028W	YJR028W	XRS2	P33301	854 aa		5.21	□□□□□ -1.58
YJR028W	YJR028W	TOD6	P34219	525 aa		5.21	□□□□□ -1.58
YJR028W	YJR028W	GSM1	P42950	618 aa		5.21	□□□□□ -1.58
YJR028W	YJR028W	UBA2	P52488	636 aa		5.21	□□□□□ -1.58
YJR028W	YJR028W	CRD1	Q07560	283 aa		5.21	□□□□□ -1.58
YJR028W	YJR028W	HOS1	Q12214	470 aa		5.21	□□□□□ -1.58
YJR028W	YJR028W	RPS9B	P05755	195 aa	Known RBP	5.2	□□□□□ -1.58
YJR028W	YJR028W	RRN3	P36070	627 aa		5.2	□□□□□ -1.58
YJR028W	YJR028W	EHT1	P38295	451 aa		5.2	□□□□□ -1.58
YJR028W	YJR028W	COS111	P38308	924 aa		5.2	□□□□□ -1.58
YJR028W	YJR028W	ELO3	P40319	345 aa		5.2	□□□□□ -1.58
YJR028W	YJR028W	YIL077C	P40508	320 aa		5.2	□□□□□ -1.58
YJR028W	YJR028W	MNN10	P50108	393 aa	Known RBP	5.2	□□□□□ -1.58
YJR028W	YJR028W	MEP3	P53390	489 aa		5.2	□□□□□ -1.58
YJR028W	YJR028W	IWR1	Q07532	353 aa	Predicted RBP	5.2	□□□□□ -1.58
YJR028W	YJR028W	NEW1	Q08972	1196 aa	Known RBP	5.2	□□□□□ -1.58
YJR028W	YJR028W	SSM4	P40318	1319 aa		5.19	□□□□□ -1.58
YJR028W	YJR028W	TUF1	P02992	437 aa	Known RBP	5.19	□□□□□ -1.58
YJR028W	YJR028W	PMA1	P05030	918 aa	Known RBP	5.19	□□□□□ -1.58
YJR028W	YJR028W	SIR3	P06701	978 aa		5.19	□□□□□ -1.58
YJR028W	YJR028W	BIK1	P11709	440 aa		5.19	□□□□□ -1.58
YJR028W	YJR028W	POL3	P15436	1097 aa		5.19	□□□□□ -1.58
YJR028W	YJR028W	UBC1	P21734	215 aa	Known RBP	5.19	□□□□□ -1.58
YJR028W	YJR028W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	5.19	□□□□□ -1.58	not detected
YJR028W	YJR028W	RFX1	P48743	811 aa		5.19	□□□□□ -1.58
YJR028W	YJR028W	UBC11	P52492	156 aa		5.19	□□□□□ -1.58
YJR028W	YJR028W	DLT1	Q04216	342 aa		5.19	□□□□□ -1.58
YJR028W	YJR028W	ARR3	Q06598	404 aa		5.19	□□□□□ -1.58
YJR028W	YJR028W	CAF20	P12962	161 aa	Known RBP	5.18	□□□□□ -1.58
YJR028W	YJR028W	PRP28	P23394	588 aa		5.18	□□□□□ -1.58
YJR028W	YJR028W	SWI4	P25302	1093 aa	Known RBP	5.18	□□□□□ -1.58
YJR028W	YJR028W	YCR015C	P25616	317 aa		5.18	□□□□□ -1.58
YJR028W	YJR028W	BCD1	P38772	366 aa		5.18	□□□□□ -1.58
YJR028W	YJR028W	SFB3	P38810	929 aa		5.18	□□□□□ -1.58
YJR028W	YJR028W	LRO1	P40345	661 aa		5.18	□□□□□ -1.58
YJR028W	YJR028W	POL31	P46957	487 aa		5.18	□□□□□ -1.58
YJR028W	YJR028W	IMA1	P53051	589 aa		5.18	□□□□□ -1.58
YJR028W	YJR028W	MCM6	P53091	1017 aa	Known RBP	5.18	□□□□□ -1.58
YJR028W	YJR028W	RRT6	P53117	311 aa	Predicted RBP	5.18	□□□□□ -1.58
YJR028W	YJR028W	MRPL13	Q02204	264 aa		5.18	□□□□□ -1.58
YJR028W	YJR028W	ENT2	Q05785	613 aa		5.18	□□□□□ -1.58
YJR028W	YJR028W	AIM41	Q12032	185 aa		5.18	□□□□□ -1.58
YJR028W	YJR028W	CHS5	Q12114	671 aa	Known RBP	5.18	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 18.7 ms