RNA–Protein interactions for RNA: YDR121W

DPB4, Transcript of Subunit of DNA pol epsilon and of ISW2 chromatin accessibility complex, yeast

Gene DPB4, Length 591 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DPB4	YDR121W	HCA4	P20448	770 aa	Known RBP	4.63	□□□□□ -1.67
DPB4	YDR121W	PRP22	P24384	1145 aa	Known RBP	4.63	□□□□□ -1.67
DPB4	YDR121W	SEC21	P32074	935 aa	Known RBP	4.63	□□□□□ -1.67
DPB4	YDR121W	CSE2	P33308	149 aa		4.63	□□□□□ -1.67
DPB4	YDR121W	YKL097C	P34245	136 aa		4.63	□□□□□ -1.67
DPB4	YDR121W	PET10	P36139	283 aa		4.63	□□□□□ -1.67
DPB4	YDR121W	MRPL7	P36519	292 aa		4.63	□□□□□ -1.67
DPB4	YDR121W	ALG3	P38179	458 aa		4.63	□□□□□ -1.67
DPB4	YDR121W	ATG14	P38270	344 aa		4.63	□□□□□ -1.67
DPB4	YDR121W	SAH1	P39954	449 aa	Known RBP	4.63	□□□□□ -1.67
DPB4	YDR121W	MGS1	P40151	587 aa		4.63	□□□□□ -1.67
DPB4	YDR121W	NEO1	P40527	1151 aa		4.63	□□□□□ -1.67
DPB4	YDR121W	GPP1	P41277	250 aa	Known RBP	4.63	□□□□□ -1.67
DPB4	YDR121W	TGL2	P54857	326 aa		4.63	□□□□□ -1.67
DPB4	YDR121W	TRE2	Q08693	809 aa		4.63	□□□□□ -1.67
DPB4	YDR121W	YOR022C	Q12204	715 aa		4.63	□□□□□ -1.67
DPB4	YDR121W	HIF1	Q12373	385 aa		4.63	□□□□□ -1.67
DPB4	YDR121W	LAA1	P39526	2014 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	COX4	P04037	155 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	CDC9	P04819	755 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	ATP4	P05626	244 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	SRD1	P09007	221 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	VPS1	P21576	704 aa	Known RBP	4.62	□□□□□ -1.67
DPB4	YDR121W	TMT1	P32643	299 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	PEX2	P32800	271 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	BMH2	P34730	273 aa	Known RBP	4.62	□□□□□ -1.67
DPB4	YDR121W	CCL1	P37366	393 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	SAF1	P38352	637 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	RPN10	P38886	268 aa	Known RBP	4.62	□□□□□ -1.67
DPB4	YDR121W	YHR202W	P38887	602 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	MOB1	P40484	314 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	ULP2	P40537	1034 aa	Predicted RBP	4.62	□□□□□ -1.67
DPB4	YDR121W	MAF1	P41910	395 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	LAM5	P43560	674 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	AVT1	P47082	602 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	ALT2	P52892	507 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	HAS1	Q03532	505 aa	Known RBP	4.62	□□□□□ -1.67
DPB4	YDR121W	MTQ2	Q03920	221 aa	Predicted RBP	4.62	□□□□□ -1.67
DPB4	YDR121W	DOT1	Q04089	582 aa	Known RBP	4.62	□□□□□ -1.67
DPB4	YDR121W	SPP382	Q06411	708 aa	Predicted RBP	4.62	□□□□□ -1.67
DPB4	YDR121W	SMC5	Q08204	1093 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	SOG2	Q08817	791 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	HFI1	Q12060	488 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	GNT1	Q12096	491 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	NKP1	Q12493	238 aa		4.62	□□□□□ -1.67
DPB4	YDR121W	BEM2	P39960	2167 aa	Known RBP	4.61	□□□□□ -1.67
DPB4	YDR121W	SEN1	Q00416	2231 aa	Known RBP	4.61	□□□□□ -1.67
DPB4	YDR121W	RPP1A	P05318	106 aa	Predicted RBP	4.61	□□□□□ -1.67
DPB4	YDR121W	SST2	P11972	698 aa	Known RBP	4.61	□□□□□ -1.67
DPB4	YDR121W	APE1	P14904	514 aa		4.61	□□□□□ -1.67
DPB4	YDR121W	GLN3	P18494	730 aa		4.61	□□□□□ -1.67
DPB4	YDR121W	PUP3	P25451	205 aa	Known RBP	4.61	□□□□□ -1.67
DPB4	YDR121W	PLC1	P32383	869 aa		4.61	□□□□□ -1.67
DPB4	YDR121W	BUD2	P33314	1104 aa		4.61	□□□□□ -1.67
DPB4	YDR121W	RGD1	P38339	666 aa		4.61	□□□□□ -1.67
DPB4	YDR121W	ERC1	P38767	581 aa		4.61	□□□□□ -1.67
DPB4	YDR121W	SPO22	P40511	975 aa		4.61	□□□□□ -1.67
DPB4	YDR121W	BUD9	P53226	547 aa		4.61	□□□□□ -1.67
DPB4	YDR121W	RET3	P53600	189 aa		4.61	□□□□□ -1.67
DPB4	YDR121W	SVL3	Q03088	825 aa	Known RBP	4.61	□□□□□ -1.67
DPB4	YDR121W	RKM2	Q03942	479 aa		4.61	□□□□□ -1.67
DPB4	YDR121W	HFD1	Q04458	532 aa		4.61	□□□□□ -1.67
DPB4	YDR121W	CSM3	Q04659	317 aa		4.61	□□□□□ -1.67
DPB4	YDR121W	YLR257W	Q06146	321 aa	Known RBP	4.61	□□□□□ -1.67
DPB4	YDR121W	YIG1	Q08956	461 aa		4.61	□□□□□ -1.67
DPB4	YDR121W	RRD2	Q12461	358 aa		4.61	□□□□□ -1.67
DPB4	YDR121W	PTC5	Q12511	572 aa		4.61	□□□□□ -1.67
DPB4	YDR121W	CDC6	P09119	513 aa		4.6	□□□□□ -1.67
DPB4	YDR121W	MATALPHA2	P0CY08	210 aa		4.6	□□□□□ -1.67
DPB4	YDR121W	HMLALPHA2	P0CY09	210 aa		4.6	□□□□□ -1.67
DPB4	YDR121W	DPB3	P27344	201 aa		4.6	□□□□□ -1.67
DPB4	YDR121W	YRO2	P38079	344 aa		4.6	□□□□□ -1.67
DPB4	YDR121W	ARP1	P38696	384 aa		4.6	□□□□□ -1.67
DPB4	YDR121W	ERP2	P39704	215 aa		4.6	□□□□□ -1.67
DPB4	YDR121W	MMF1	P40185	145 aa	Known RBP	4.6	□□□□□ -1.67
DPB4	YDR121W	PRK1	P40494	810 aa		4.6	□□□□□ -1.67
DPB4	YDR121W	IRC24	P40580	263 aa		4.6	□□□□□ -1.67
DPB4	YDR121W	MNP1	P53163	194 aa	Predicted RBP	4.6	□□□□□ -1.67
DPB4	YDR121W	PGA2	P53903	129 aa		4.6	□□□□□ -1.67
DPB4	YDR121W	HCR1	Q05775	265 aa	Known RBP	4.6	□□□□□ -1.67
DPB4	YDR121W	MRI1	Q06489	411 aa	Known RBP	4.6	□□□□□ -1.67
DPB4	YDR121W	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
DPB4	YDR121W	PKH2	Q12236	1081 aa	Known RBP	4.6	□□□□□ -1.67
DPB4	YDR121W	NUM1	Q00402	2748 aa		4.6	□□□□□ -1.67
DPB4	YDR121W	THR4	P16120	514 aa	Known RBP	4.59	□□□□□ -1.67
DPB4	YDR121W	RSA4	P25382	515 aa	Known RBP	4.59	□□□□□ -1.67
DPB4	YDR121W	PRP19	P32523	503 aa	Known RBP	4.59	□□□□□ -1.67
DPB4	YDR121W	SPC29	P33419	253 aa		4.59	□□□□□ -1.67
DPB4	YDR121W	HEL1	P36113	551 aa		4.59	□□□□□ -1.67
DPB4	YDR121W	RIM4	P38741	713 aa		4.59	□□□□□ -1.67
DPB4	YDR121W	STT3	P39007	718 aa	Known RBP	4.59	□□□□□ -1.67
DPB4	YDR121W	IES5	P40060	125 aa		4.59	□□□□□ -1.67
DPB4	YDR121W	YJR096W	P47137	282 aa		4.59	□□□□□ -1.67
DPB4	YDR121W	YGR021W	P53212	290 aa		4.59	□□□□□ -1.67
DPB4	YDR121W	YNL146W	P53906	100 aa		4.59	□□□□□ -1.67
DPB4	YDR121W	IES4	Q08561	116 aa		4.59	□□□□□ -1.67
DPB4	YDR121W	ZPS1	Q12512	249 aa		4.59	□□□□□ -1.67
DPB4	YDR121W	TEL1	P38110	2787 aa		4.58	□□□□□ -1.68
DPB4	YDR121W	SPE1	P08432	466 aa		4.58	□□□□□ -1.68
DPB4	YDR121W	TCP1	P12612	559 aa	Known RBP	4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 103.9 ms