RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 ARAP2Q8WZ64 1704 aa17.06■□□□□ 0.32
TRIM28-211ENST00000597968 LAMB1P07942 1786 aa17.05■□□□□ 0.32
TRIM28-211ENST00000597968 FRAT2O75474 233 aaPredicted RBP17.05■□□□□ 0.32
TRIM28-211ENST00000597968 USP2O75604 605 aaPredicted RBP17.05■□□□□ 0.32
TRIM28-211ENST00000597968 CRKP46108 304 aa17.05■□□□□ 0.32
TRIM28-211ENST00000597968 NBPF12Q5TAG4 269 aaPredicted RBP17.05■□□□□ 0.32
TRIM28-211ENST00000597968 FKBP1CQ5VVH2 108 aa17.05■□□□□ 0.32
TRIM28-211ENST00000597968 IFNL1Q8IU54 200 aa17.05■□□□□ 0.32
TRIM28-211ENST00000597968 TESPA1A2RU30 521 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-211ENST00000597968 FGFR2P21802 821 aa17.04■□□□□ 0.32
TRIM28-211ENST00000597968 LRRC24Q50LG9 513 aa17.04■□□□□ 0.32
TRIM28-211ENST00000597968 FBXO46Q6PJ61 603 aaPredicted RBP17.04■□□□□ 0.32
TRIM28-211ENST00000597968 LPIN2Q92539 896 aa17.04■□□□□ 0.32
TRIM28-211ENST00000597968 TEKT1Q969V4 418 aa17.04■□□□□ 0.32
TRIM28-211ENST00000597968 JAG2Q9Y219 1238 aa17.04■□□□□ 0.32
TRIM28-211ENST00000597968 PCDHAC2Q9Y5I4 1007 aa17.04■□□□□ 0.32
TRIM28-211ENST00000597968 EYA2O00167 538 aa17.03■□□□□ 0.32
TRIM28-211ENST00000597968 MKRN3Q13064 507 aaKnown RBP17.03■□□□□ 0.32
TRIM28-211ENST00000597968 HHIPL2Q6UWX4 724 aa17.03■□□□□ 0.32
TRIM28-211ENST00000597968 FAM83AQ86UY5 434 aa17.03■□□□□ 0.32
TRIM28-211ENST00000597968 ZDHHC15Q96MV8 337 aa17.03■□□□□ 0.32
TRIM28-211ENST00000597968 TDRD3Q9H7E2 651 aaKnown RBP17.03■□□□□ 0.32
TRIM28-211ENST00000597968 SMC4Q9NTJ3 1288 aa17.03■□□□□ 0.32
TRIM28-211ENST00000597968 HPS5Q9UPZ3 1129 aa17.03■□□□□ 0.32
TRIM28-211ENST00000597968 CIAO1O76071 339 aa17.02■□□□□ 0.32
TRIM28-211ENST00000597968 WDR66Q8TBY9 1149 aa17.02■□□□□ 0.32
TRIM28-211ENST00000597968 TEPSINQ96N21 525 aa17.02■□□□□ 0.32
TRIM28-211ENST00000597968 API5Q9BZZ5 524 aaKnown RBP17.02■□□□□ 0.32
TRIM28-211ENST00000597968 TMOD2Q9NZR1 351 aa17.02■□□□□ 0.32
TRIM28-211ENST00000597968 CCER2I3L3R5 266 aa17.01■□□□□ 0.31
TRIM28-211ENST00000597968 SLC5A1P13866 664 aa17.01■□□□□ 0.31
TRIM28-211ENST00000597968 RFX5P48382 616 aaPredicted RBP17.01■□□□□ 0.31
TRIM28-211ENST00000597968 CLMNQ96JQ2 1002 aa17.01■□□□□ 0.31
TRIM28-211ENST00000597968 UBTFL1P0CB47 393 aaPredicted RBP17■□□□□ 0.31
TRIM28-211ENST00000597968 ARHGAP45Q92619 1136 aa17■□□□□ 0.31
TRIM28-211ENST00000597968 RPAP1Q9BWH6 1393 aaPredicted RBP17■□□□□ 0.31
TRIM28-211ENST00000597968 AOX1Q06278 1338 aa16.99■□□□□ 0.31
TRIM28-211ENST00000597968 BCAMP50895 628 aa16.99■□□□□ 0.31
TRIM28-211ENST00000597968 GTF2A2P52657 109 aa16.99■□□□□ 0.31
TRIM28-211ENST00000597968 MAP3K9P80192 1104 aa16.99■□□□□ 0.31
TRIM28-211ENST00000597968 CHAF1AQ13111 956 aaPredicted RBP16.99■□□□□ 0.31
TRIM28-211ENST00000597968 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.99■□□□□ 0.31
TRIM28-211ENST00000597968 ERO1AQ96HE7 468 aa16.99■□□□□ 0.31
TRIM28-211ENST00000597968 ZCCHC17Q9NP64 241 aaKnown RBP16.99■□□□□ 0.31
TRIM28-211ENST00000597968 GNL3LQ9NVN8 582 aaKnown RBP16.99■□□□□ 0.31
TRIM28-211ENST00000597968 FZD1Q9UP38 647 aa16.99■□□□□ 0.31
TRIM28-211ENST00000597968 CSADQ9Y600 493 aa16.99■□□□□ 0.31
TRIM28-211ENST00000597968 TCP10L2B9ZVM9 353 aa16.98■□□□□ 0.31
TRIM28-211ENST00000597968 IGF2BP3O00425 579 aaKnown RBP eCLIP16.98■□□□□ 0.31
TRIM28-211ENST00000597968 SEMA3EO15041 775 aa16.98■□□□□ 0.31
TRIM28-211ENST00000597968 ARHGEF6Q15052 776 aa16.98■□□□□ 0.31
TRIM28-211ENST00000597968 INTS3Q68E01 1043 aaKnown RBP16.98■□□□□ 0.31
TRIM28-211ENST00000597968 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.98■□□□□ 0.31
TRIM28-211ENST00000597968 OPTNQ96CV9 577 aa16.98■□□□□ 0.31
TRIM28-211ENST00000597968 CEP126Q9P2H0 1117 aa16.98■□□□□ 0.31
TRIM28-211ENST00000597968 WDHD1O75717 1129 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-211ENST00000597968 IL15P40933 162 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-211ENST00000597968 DCAF15Q66K64 600 aa16.97■□□□□ 0.31
TRIM28-211ENST00000597968 APOBEC3HQ6NTF7 200 aaKnown RBP16.97■□□□□ 0.31
TRIM28-211ENST00000597968 ATG9AQ7Z3C6 839 aa16.97■□□□□ 0.31
TRIM28-211ENST00000597968 KLHDC4Q8TBB5 520 aa16.97■□□□□ 0.31
TRIM28-211ENST00000597968 CDCA7LQ96GN5 454 aa16.97■□□□□ 0.31
TRIM28-211ENST00000597968 MS4A4AQ96JQ5 239 aa16.97■□□□□ 0.31
TRIM28-211ENST00000597968 TMEM39BQ9GZU3 492 aa16.97■□□□□ 0.31
TRIM28-211ENST00000597968 IQSEC3Q9UPP2 1182 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-211ENST00000597968 TNRC18O15417 2968 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-211ENST00000597968 SALL1Q9NSC2 1324 aa16.96■□□□□ 0.31
TRIM28-211ENST00000597968 GJA5P36382 358 aa16.96■□□□□ 0.31
TRIM28-211ENST00000597968 ZGPATQ8N5A5 531 aaKnown RBP16.96■□□□□ 0.31
TRIM28-211ENST00000597968 R3HDMLQ9H3Y0 253 aa16.96■□□□□ 0.31
TRIM28-211ENST00000597968 ELP3Q9H9T3 547 aa16.96■□□□□ 0.31
TRIM28-211ENST00000597968 COPRSQ9NQ92 184 aa16.96■□□□□ 0.31
TRIM28-211ENST00000597968 SPDYE5A6NIY4 337 aa16.95■□□□□ 0.3
TRIM28-211ENST00000597968 SOX10P56693 466 aa16.95■□□□□ 0.3
TRIM28-211ENST00000597968 VGLL4Q14135 290 aa16.95■□□□□ 0.3
TRIM28-211ENST00000597968 GRIK5Q16478 980 aa16.95■□□□□ 0.3
TRIM28-211ENST00000597968 ERO1BQ86YB8 467 aa16.95■□□□□ 0.3
TRIM28-211ENST00000597968 DENND2AQ9ULE3 1009 aa16.95■□□□□ 0.3
TRIM28-211ENST00000597968 NOB1Q9ULX3 412 aaKnown RBP16.95■□□□□ 0.3
TRIM28-211ENST00000597968 PDS5AQ29RF7 1337 aaKnown RBP16.95■□□□□ 0.3
TRIM28-211ENST00000597968 GNAI3P08754 354 aa16.94■□□□□ 0.3
TRIM28-211ENST00000597968 SP3Q02447 781 aa16.94■□□□□ 0.3
TRIM28-211ENST00000597968 CRHR2Q13324 411 aa16.94■□□□□ 0.3
TRIM28-211ENST00000597968 ATP2B3Q16720 1220 aa16.94■□□□□ 0.3
TRIM28-211ENST00000597968 OTOP1Q7RTM1 612 aa16.94■□□□□ 0.3
TRIM28-211ENST00000597968 FAM151AQ8WW52 585 aa16.94■□□□□ 0.3
TRIM28-211ENST00000597968 PTPN18Q99952 460 aa16.94■□□□□ 0.3
TRIM28-211ENST00000597968 ZFYVE28Q9HCC9 887 aa16.94■□□□□ 0.3
TRIM28-211ENST00000597968 TRIM17Q9Y577 477 aa16.94■□□□□ 0.3
TRIM28-211ENST00000597968 HTTP42858 3142 aa16.93■□□□□ 0.3
TRIM28-211ENST00000597968 CETPP11597 493 aa16.93■□□□□ 0.3
TRIM28-211ENST00000597968 RARSP54136 660 aaKnown RBP16.93■□□□□ 0.3
TRIM28-211ENST00000597968 CCL15-CCL14A0A0B4J2E2 113 aa16.92■□□□□ 0.3
TRIM28-211ENST00000597968 IPO8O15397 1037 aaKnown RBP16.92■□□□□ 0.3
TRIM28-211ENST00000597968 LDHBP07195 334 aaKnown RBP16.92■□□□□ 0.3
TRIM28-211ENST00000597968 PPATQ06203 517 aa16.92■□□□□ 0.3
TRIM28-211ENST00000597968 MTX1Q13505 466 aa16.92■□□□□ 0.3
TRIM28-211ENST00000597968 CCL15Q16663 113 aa16.92■□□□□ 0.3
TRIM28-211ENST00000597968 SLF2Q8IX21 1173 aa16.92■□□□□ 0.3
TRIM28-211ENST00000597968 WRNIP1Q96S55 665 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms