RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 SH3BP5O60239 455 aa8.35□□□□□ -1.07
VPS29-210ENST00000552130 MMP20O60882 483 aa8.35□□□□□ -1.07
VPS29-210ENST00000552130 XYLBO75191 536 aa8.35□□□□□ -1.07
VPS29-210ENST00000552130 IGLV1-40P01703 118 aa8.35□□□□□ -1.07
VPS29-210ENST00000552130 S100BP04271 92 aaPredicted RBP8.35□□□□□ -1.07
VPS29-210ENST00000552130 IL22RA1Q8N6P7 574 aa8.35□□□□□ -1.07
VPS29-210ENST00000552130 DCAF11Q8TEB1 546 aa8.35□□□□□ -1.07
VPS29-210ENST00000552130 NAP1L5Q96NT1 182 aaPredicted RBP8.35□□□□□ -1.07
VPS29-210ENST00000552130 UBL7Q96S82 380 aaPredicted RBP8.35□□□□□ -1.07
VPS29-210ENST00000552130 GSC2O15499 205 aa8.34□□□□□ -1.07
VPS29-210ENST00000552130 TXKP42681 527 aa8.34□□□□□ -1.07
VPS29-210ENST00000552130 ARID5AQ03989 594 aa8.34□□□□□ -1.07
VPS29-210ENST00000552130 GDF6Q6KF10 455 aaPredicted RBP8.34□□□□□ -1.07
VPS29-210ENST00000552130 RPUSD2Q8IZ73 545 aaKnown RBP8.34□□□□□ -1.07
VPS29-210ENST00000552130 CACTIN-AS1Q8N1I8 211 aa8.34□□□□□ -1.07
VPS29-210ENST00000552130 OAS3Q9Y6K5 1087 aaKnown RBP8.34□□□□□ -1.07
VPS29-210ENST00000552130 PSAPP07602 524 aa8.33□□□□□ -1.08
VPS29-210ENST00000552130 PAX3P23760 479 aa8.33□□□□□ -1.08
VPS29-210ENST00000552130 ITGAEP38570 1179 aa8.33□□□□□ -1.08
VPS29-210ENST00000552130 XPCQ01831 940 aaPredicted RBP8.33□□□□□ -1.08
VPS29-210ENST00000552130 TSHZ1Q6ZSZ6 1077 aa8.33□□□□□ -1.08
VPS29-210ENST00000552130 ARMC10Q8N2F6 343 aa8.33□□□□□ -1.08
VPS29-210ENST00000552130 AGGF1Q8N302 714 aaeCLIP8.33□□□□□ -1.08
VPS29-210ENST00000552130 MRS2Q9HD23 443 aa8.33□□□□□ -1.08
VPS29-210ENST00000552130 DDX56Q9NY93 547 aaKnown RBP8.33□□□□□ -1.08
VPS29-210ENST00000552130 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.33□□□□□ -1.08
VPS29-210ENST00000552130 DNAJC6O75061 913 aa8.32□□□□□ -1.08
VPS29-210ENST00000552130 COBLO75128 1261 aa8.32□□□□□ -1.08
VPS29-210ENST00000552130 TGFB1P01137 390 aa8.32□□□□□ -1.08
VPS29-210ENST00000552130 ZNF76P36508 570 aa8.32□□□□□ -1.08
VPS29-210ENST00000552130 IRAK1P51617 712 aa8.32□□□□□ -1.08
VPS29-210ENST00000552130 TBX4P57082 545 aa8.32□□□□□ -1.08
VPS29-210ENST00000552130 RHBDL3P58872 404 aa8.32□□□□□ -1.08
VPS29-210ENST00000552130 ARHGAP4P98171 946 aa8.32□□□□□ -1.08
VPS29-210ENST00000552130 ECM1Q16610 540 aa8.32□□□□□ -1.08
VPS29-210ENST00000552130 ZFYVE27Q5T4F4 411 aa8.32□□□□□ -1.08
VPS29-210ENST00000552130 TREML1Q86YW5 311 aa8.32□□□□□ -1.08
VPS29-210ENST00000552130 ZDHHC13Q8IUH4 622 aa8.32□□□□□ -1.08
VPS29-210ENST00000552130 GALNT11Q8NCW6 608 aa8.32□□□□□ -1.08
VPS29-210ENST00000552130 NSUN5Q96P11 429 aaKnown RBP8.32□□□□□ -1.08
VPS29-210ENST00000552130 MUC3BQ9H195 1237 aa8.32□□□□□ -1.08
VPS29-210ENST00000552130 TRIM33Q9UPN9 1127 aa8.32□□□□□ -1.08
VPS29-210ENST00000552130 ADAMTS4O75173 837 aa8.31□□□□□ -1.08
VPS29-210ENST00000552130 GHRHP01286 108 aa8.31□□□□□ -1.08
VPS29-210ENST00000552130 SPINK2P20155 84 aa8.31□□□□□ -1.08
VPS29-210ENST00000552130 GP2P55259 537 aaKnown RBP8.31□□□□□ -1.08
VPS29-210ENST00000552130 NFE2L2Q16236 605 aa8.31□□□□□ -1.08
VPS29-210ENST00000552130 CMTR1Q8N1G2 835 aaKnown RBP8.31□□□□□ -1.08
VPS29-210ENST00000552130 MRFAP1L1Q96HT8 127 aa8.31□□□□□ -1.08
VPS29-210ENST00000552130 FAM161BQ96MY7 647 aa8.31□□□□□ -1.08
VPS29-210ENST00000552130 PRMT3O60678 531 aa8.3□□□□□ -1.08
VPS29-210ENST00000552130 STK10O94804 968 aaKnown RBP8.3□□□□□ -1.08
VPS29-210ENST00000552130 XRCC5P13010 732 aaKnown RBP8.3□□□□□ -1.08
VPS29-210ENST00000552130 GLB1P16278 677 aa8.3□□□□□ -1.08
VPS29-210ENST00000552130 BIRC2Q13490 618 aa8.3□□□□□ -1.08
VPS29-210ENST00000552130 C4orf46Q504U0 113 aa8.3□□□□□ -1.08
VPS29-210ENST00000552130 COX20Q5RI15 118 aa8.3□□□□□ -1.08
VPS29-210ENST00000552130 FMNL3Q8IVF7 1028 aa8.3□□□□□ -1.08
VPS29-210ENST00000552130 STAG1Q8WVM7 1258 aa8.3□□□□□ -1.08
VPS29-210ENST00000552130 KRTAP4-7Q9BYR0 210 aa8.3□□□□□ -1.08
VPS29-210ENST00000552130 MAF1Q9H063 256 aa8.3□□□□□ -1.08
VPS29-210ENST00000552130 SPC25Q9HBM1 224 aa8.3□□□□□ -1.08
VPS29-210ENST00000552130 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.3□□□□□ -1.08
VPS29-210ENST00000552130 STOML1Q9UBI4 398 aa8.3□□□□□ -1.08
VPS29-210ENST00000552130 PTCD1O75127 700 aaKnown RBP8.29□□□□□ -1.08
VPS29-210ENST00000552130 WISP1O95388 367 aa8.29□□□□□ -1.08
VPS29-210ENST00000552130 TAL1P17542 331 aaPredicted RBP8.29□□□□□ -1.08
VPS29-210ENST00000552130 TRIP4Q15650 581 aaPredicted RBP8.29□□□□□ -1.08
VPS29-210ENST00000552130 PKNOX2Q96KN3 472 aa8.29□□□□□ -1.08
VPS29-210ENST00000552130 RBSNQ9H1K0 784 aa8.29□□□□□ -1.08
VPS29-210ENST00000552130 CXXC1Q9P0U4 656 aaPredicted RBP8.29□□□□□ -1.08
VPS29-210ENST00000552130 PARP2Q9UGN5 583 aa8.29□□□□□ -1.08
VPS29-210ENST00000552130 PNMA2Q9UL42 364 aa8.29□□□□□ -1.08
VPS29-210ENST00000552130 INPP5FQ9Y2H2 1132 aa8.29□□□□□ -1.08
VPS29-210ENST00000552130 ENPP3O14638 875 aa8.28□□□□□ -1.08
VPS29-210ENST00000552130 PRC1O43663 620 aa8.28□□□□□ -1.08
VPS29-210ENST00000552130 ZEB1P37275 1124 aaPredicted RBP8.28□□□□□ -1.08
VPS29-210ENST00000552130 PDE3BQ13370 1112 aa8.28□□□□□ -1.08
VPS29-210ENST00000552130 NLRP13Q86W25 1043 aa8.28□□□□□ -1.08
VPS29-210ENST00000552130 GTF3C2Q8WUA4 911 aaPredicted RBP8.28□□□□□ -1.08
VPS29-210ENST00000552130 FAM46AQ96IP4 442 aaKnown RBP8.28□□□□□ -1.08
VPS29-210ENST00000552130 VTI1BQ9UEU0 232 aa8.28□□□□□ -1.08
VPS29-210ENST00000552130 PRR19A6NJB7 356 aa8.27□□□□□ -1.09
VPS29-210ENST00000552130 DHX15O43143 795 aaKnown RBP8.27□□□□□ -1.09
VPS29-210ENST00000552130 SORBS3O60504 671 aa8.27□□□□□ -1.09
VPS29-210ENST00000552130 YBX3P16989 372 aaKnown RBP eCLIP8.27□□□□□ -1.091e-6■■□□□ 11.7
VPS29-210ENST00000552130 FKBP4Q02790 459 aaKnown RBP eCLIP8.27□□□□□ -1.09
VPS29-210ENST00000552130 NFIAQ12857 509 aa8.27□□□□□ -1.09
VPS29-210ENST00000552130 FOXD4Q12950 439 aaPredicted RBP8.27□□□□□ -1.09
VPS29-210ENST00000552130 SF3B2Q13435 895 aaKnown RBP8.27□□□□□ -1.09
VPS29-210ENST00000552130 UVSSAQ2YD98 709 aa8.27□□□□□ -1.09
VPS29-210ENST00000552130 TMC4Q7Z404 712 aa8.27□□□□□ -1.09
VPS29-210ENST00000552130 ETFBKMTQ8IXQ9 262 aa8.27□□□□□ -1.09
VPS29-210ENST00000552130 FAM9BQ8IZU0 186 aa8.27□□□□□ -1.09
VPS29-210ENST00000552130 OR13H1Q8NG92 308 aa8.27□□□□□ -1.09
VPS29-210ENST00000552130 JDP2Q8WYK2 163 aa8.27□□□□□ -1.09
VPS29-210ENST00000552130 RPS6KC1Q96S38 1066 aa8.27□□□□□ -1.09
VPS29-210ENST00000552130 KCNK4Q9NYG8 393 aa8.27□□□□□ -1.09
VPS29-210ENST00000552130 PPP1R12AO14974 1030 aaPredicted RBP8.26□□□□□ -1.09
VPS29-210ENST00000552130 PRPF40AO75400 957 aaKnown RBP8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms