RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 PHC3Q8NDX5 983 aa4.59□□□□□ -1.67
CD44-234ENST00000531873 TRPM4Q8TD43 1214 aa4.59□□□□□ -1.67
CD44-234ENST00000531873 EAF1Q96JC9 268 aaPredicted RBP4.59□□□□□ -1.67
CD44-234ENST00000531873 SPATA32Q96LK8 384 aa4.59□□□□□ -1.67
CD44-234ENST00000531873 TMEM74Q96NL1 305 aa4.59□□□□□ -1.67
CD44-234ENST00000531873 SPON2Q9BUD6 331 aa4.59□□□□□ -1.67
CD44-234ENST00000531873 ZNF576Q9H609 170 aa4.59□□□□□ -1.67
CD44-234ENST00000531873 PRDM6Q9NQX0 595 aa4.59□□□□□ -1.67
CD44-234ENST00000531873 TLR6Q9Y2C9 796 aa4.59□□□□□ -1.67
CD44-234ENST00000531873 AKAP2Q9Y2D5 859 aa4.59□□□□□ -1.67
CD44-234ENST00000531873 COL17A1Q9UMD9 1497 aaPredicted RBP4.58□□□□□ -1.68
CD44-234ENST00000531873 MINDY4BA8MYZ0 360 aa4.58□□□□□ -1.68
CD44-234ENST00000531873 PAGE1O75459 146 aa4.58□□□□□ -1.68
CD44-234ENST00000531873 EIF4A3P38919 411 aaKnown RBP4.58□□□□□ -1.68
CD44-234ENST00000531873 TXKP42681 527 aa4.58□□□□□ -1.68
CD44-234ENST00000531873 LIG3P49916 1009 aa4.58□□□□□ -1.68
CD44-234ENST00000531873 MLLT1Q03111 559 aaPredicted RBP4.58□□□□□ -1.68
CD44-234ENST00000531873 RBL2Q08999 1139 aa4.58□□□□□ -1.68
CD44-234ENST00000531873 PWP1Q13610 501 aa4.58□□□□□ -1.68
CD44-234ENST00000531873 MAP3K11Q16584 847 aa4.58□□□□□ -1.68
CD44-234ENST00000531873 FBXL19Q6PCT2 694 aa4.58□□□□□ -1.68
CD44-234ENST00000531873 NXPE3Q969Y0 559 aa4.58□□□□□ -1.68
CD44-234ENST00000531873 NECAB3Q96P71 396 aaPredicted RBP4.58□□□□□ -1.68
CD44-234ENST00000531873 FMNL2Q96PY5 1086 aa4.58□□□□□ -1.68
CD44-234ENST00000531873 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.58□□□□□ -1.68
CD44-234ENST00000531873 RASSF4Q9H2L5 321 aa4.58□□□□□ -1.68
CD44-234ENST00000531873 PPP4R2Q9NY27 417 aa4.58□□□□□ -1.68
CD44-234ENST00000531873 ARID1BQ8NFD5 2236 aaPredicted RBP4.57□□□□□ -1.68
CD44-234ENST00000531873 ELOA3CA0A087WX78 387 aaPredicted RBP4.57□□□□□ -1.68
CD44-234ENST00000531873 A0A096LPE4 126 aa4.57□□□□□ -1.68
CD44-234ENST00000531873 A0A1W2PPZ6 126 aa4.57□□□□□ -1.68
CD44-234ENST00000531873 ELOA3DA6NLF2 546 aaPredicted RBP4.57□□□□□ -1.68
CD44-234ENST00000531873 J3QW42 95 aa4.57□□□□□ -1.68
CD44-234ENST00000531873 YBX3P16989 372 aaKnown RBP eCLIP4.57□□□□□ -1.68
CD44-234ENST00000531873 GBP2P32456 591 aaPredicted RBP4.57□□□□□ -1.68
CD44-234ENST00000531873 ELOA3BQ3SY89 546 aa4.57□□□□□ -1.68
CD44-234ENST00000531873 RASIP1Q5U651 963 aa4.57□□□□□ -1.68
CD44-234ENST00000531873 RELL1Q8IUW5 271 aa4.57□□□□□ -1.68
CD44-234ENST00000531873 ELOA3Q8NG57 546 aa4.57□□□□□ -1.68
CD44-234ENST00000531873 PBX4Q9BYU1 374 aa4.57□□□□□ -1.68
CD44-234ENST00000531873 MUC3BQ9H195 1237 aa4.57□□□□□ -1.68
CD44-234ENST00000531873 PIF1Q9H611 641 aa4.57□□□□□ -1.68
CD44-234ENST00000531873 SEC31BQ9NQW1 1179 aa4.57□□□□□ -1.68
CD44-234ENST00000531873 NAGPAQ9UK23 515 aa4.57□□□□□ -1.68
CD44-234ENST00000531873 LOC102724428A0A0B4J2F2 783 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 PDE2AO00408 941 aaPredicted RBP4.56□□□□□ -1.68
CD44-234ENST00000531873 PAX4O43316 350 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 GREM1O60565 184 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 COBLO75128 1261 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 PF4P02776 101 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 TFE3P19532 575 aaPredicted RBP4.56□□□□□ -1.68
CD44-234ENST00000531873 CRKP46108 304 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 SOX9P48436 509 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 SIK1P57059 783 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 PCBP4P57723 403 aaKnown RBP4.56□□□□□ -1.68
CD44-234ENST00000531873 FAM160A1Q05DH4 1040 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 CCDC144BQ3MJ40 725 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 AGMOQ6ZNB7 445 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 HFE2Q6ZVN8 426 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 SYT9Q86SS6 491 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 PMFBP1Q8TBY8 1022 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 ZNF296Q8WUU4 475 aaPredicted RBP4.56□□□□□ -1.68
CD44-234ENST00000531873 NT5C1AQ9BXI3 368 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 GINM1Q9NU53 330 aa4.56□□□□□ -1.68
CD44-234ENST00000531873 DNAJB12Q9NXW2 375 aaKnown RBP4.56□□□□□ -1.68
CD44-234ENST00000531873 CADPSQ9ULU8 1353 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 ADARB2-AS1A8MUL3 147 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 C9orf172C9J069 976 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 RLBP1P12271 317 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 ALAS2P22557 587 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 NASPP49321 788 aaPredicted RBP4.55□□□□□ -1.68
CD44-234ENST00000531873 TRIM28Q13263 835 aaKnown RBP4.55□□□□□ -1.68
CD44-234ENST00000531873 CAMK2GQ13555 558 aaPredicted RBP4.55□□□□□ -1.68
CD44-234ENST00000531873 ADGRE1Q14246 886 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 RPS26P11Q5JNZ5 115 aaPredicted RBP4.55□□□□□ -1.68
CD44-234ENST00000531873 PCNX4Q63HM2 1172 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 TTBK2Q6IQ55 1244 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 VPS37DQ86XT2 251 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 ASAP3Q8TDY4 903 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 TNFRSF25Q93038 417 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 SEC16BQ96JE7 1060 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 SPACA7Q96KW9 195 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 POP1Q99575 1024 aaKnown RBP4.55□□□□□ -1.68
CD44-234ENST00000531873 UBE2OQ9C0C9 1292 aaKnown RBP4.55□□□□□ -1.68
CD44-234ENST00000531873 CEP44Q9C0F1 390 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 ZNF408Q9H9D4 720 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 ZFYVE1Q9HBF4 777 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 UBP1Q9NZI7 540 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 SOX13Q9UN79 622 aa4.55□□□□□ -1.68
CD44-234ENST00000531873 SUPT16HQ9Y5B9 1047 aaKnown RBP4.55□□□□□ -1.68
CD44-234ENST00000531873 SIN3BO75182 1162 aa4.54□□□□□ -1.68
CD44-234ENST00000531873 STK10O94804 968 aaKnown RBP4.54□□□□□ -1.68
CD44-234ENST00000531873 B3GALT4O96024 378 aa4.54□□□□□ -1.68
CD44-234ENST00000531873 ELNP15502 786 aa4.54□□□□□ -1.68
CD44-234ENST00000531873 EIF2AK2P19525 551 aaKnown RBP4.54□□□□□ -1.68
CD44-234ENST00000531873 RPS26P62854 115 aaKnown RBP4.54□□□□□ -1.68
CD44-234ENST00000531873 LMNB2Q03252 620 aa4.54□□□□□ -1.68
CD44-234ENST00000531873 SERINC3Q13530 473 aa4.54□□□□□ -1.68
CD44-234ENST00000531873 NEUROD1Q13562 356 aa4.54□□□□□ -1.68
CD44-234ENST00000531873 VN1R5Q7Z5H4 357 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 111.3 ms