RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 TATDN2Q93075 761 aa8.82□□□□□ -1
HDAC3-216ENST00000523088 RASSF4Q9H2L5 321 aa8.82□□□□□ -1
HDAC3-216ENST00000523088 RWDD1Q9H446 243 aaPredicted RBP8.82□□□□□ -1
HDAC3-216ENST00000523088 GOPCQ9HD26 462 aa8.82□□□□□ -1
HDAC3-216ENST00000523088 PIM2Q9P1W9 311 aa8.82□□□□□ -1
HDAC3-216ENST00000523088 CHPF2Q9P2E5 772 aa8.82□□□□□ -1
HDAC3-216ENST00000523088 ZNF652Q9Y2D9 606 aa8.82□□□□□ -1
HDAC3-216ENST00000523088 ZBTB1Q9Y2K1 713 aa8.82□□□□□ -1
HDAC3-216ENST00000523088 CARMIL3Q8ND23 1372 aa8.82□□□□□ -1
HDAC3-216ENST00000523088 POLRMTO00411 1230 aaKnown RBP8.81□□□□□ -1
HDAC3-216ENST00000523088 NPHP1O15259 732 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 SNRPA1P09661 255 aaKnown RBP8.81□□□□□ -1
HDAC3-216ENST00000523088 TM4SF1P30408 202 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 ZNF132P52740 706 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 RBM5P52756 815 aaKnown RBP eCLIP8.81□□□□□ -1
HDAC3-216ENST00000523088 C1QTNF8P60827 252 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 DALRD3Q5D0E6 543 aaKnown RBP8.81□□□□□ -1
HDAC3-216ENST00000523088 USPL1Q5W0Q7 1092 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 WWC2Q6AWC2 1192 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 IQCEQ6IPM2 695 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 CCDC70Q6NSX1 233 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 TRIM74Q86UV6 250 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 TRIM73Q86UV7 250 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 STAG2Q8N3U4 1231 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 HDAC7Q8WUI4 952 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 VTI1AQ96AJ9 217 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 GPATCH3Q96I76 525 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 ZNF496Q96IT1 587 aaPredicted RBP8.81□□□□□ -1
HDAC3-216ENST00000523088 USP25Q9UHP3 1055 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 NOL7Q9UMY1 257 aaKnown RBP8.81□□□□□ -1
HDAC3-216ENST00000523088 BCS1LQ9Y276 419 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 ARFGEF2Q9Y6D5 1785 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 SBF1O95248 1867 aa8.81□□□□□ -1
HDAC3-216ENST00000523088 hCG_2014768A0A024R1R8 64 aa8.8□□□□□ -1
HDAC3-216ENST00000523088 SHTN1A0MZ66 631 aa8.8□□□□□ -1
HDAC3-216ENST00000523088 CDKL5O76039 1030 aa8.8□□□□□ -1
HDAC3-216ENST00000523088 BAG4O95429 457 aaKnown RBP8.8□□□□□ -1
HDAC3-216ENST00000523088 RWDD2BP57060 319 aa8.8□□□□□ -1
HDAC3-216ENST00000523088 CCDC15Q0P6D6 951 aa8.8□□□□□ -1
HDAC3-216ENST00000523088 PDAP1Q13442 181 aaKnown RBP8.8□□□□□ -1
HDAC3-216ENST00000523088 SMIM5Q71RC9 77 aa8.8□□□□□ -1
HDAC3-216ENST00000523088 SND1Q7KZF4 910 aaKnown RBP eCLIP8.8□□□□□ -1
HDAC3-216ENST00000523088 KRT77Q7Z794 578 aa8.8□□□□□ -1
HDAC3-216ENST00000523088 NUTM1Q86Y26 1132 aa8.8□□□□□ -1
HDAC3-216ENST00000523088 EFCAB13Q8IY85 973 aa8.8□□□□□ -1
HDAC3-216ENST00000523088 PDCL2Q8N4E4 241 aa8.8□□□□□ -1
HDAC3-216ENST00000523088 TNPO1Q92973 898 aaKnown RBP8.8□□□□□ -1
HDAC3-216ENST00000523088 CLUAP1Q96AJ1 413 aa8.8□□□□□ -1
HDAC3-216ENST00000523088 MRRFQ96E11 262 aaKnown RBP8.8□□□□□ -1
HDAC3-216ENST00000523088 PHACTR3Q96KR7 559 aa8.8□□□□□ -1
HDAC3-216ENST00000523088 SRP68Q9UHB9 627 aaKnown RBP8.8□□□□□ -1
HDAC3-216ENST00000523088 ACAD8Q9UKU7 415 aa8.8□□□□□ -1
HDAC3-216ENST00000523088 CIZ1Q9ULV3 898 aaPredicted RBP8.8□□□□□ -1
HDAC3-216ENST00000523088 TNRC6CQ9HCJ0 1690 aaKnown RBP8.79□□□□□ -1
HDAC3-216ENST00000523088 PABPN1LA6NDY0 278 aaKnown RBP8.79□□□□□ -1
HDAC3-216ENST00000523088 TGFB3P10600 412 aa8.79□□□□□ -1
HDAC3-216ENST00000523088 DPEP1P16444 411 aa8.79□□□□□ -1
HDAC3-216ENST00000523088 DDR1Q08345 913 aa8.79□□□□□ -1
HDAC3-216ENST00000523088 CHAF1AQ13111 956 aaPredicted RBP8.79□□□□□ -1
HDAC3-216ENST00000523088 NFIXQ14938 502 aa8.79□□□□□ -1
HDAC3-216ENST00000523088 CCDC146Q8IYE0 955 aa8.79□□□□□ -1
HDAC3-216ENST00000523088 GIMAP1Q8WWP7 306 aa8.79□□□□□ -1
HDAC3-216ENST00000523088 CDK5RAP3Q96JB5 506 aa8.79□□□□□ -1
HDAC3-216ENST00000523088 NAP1L4Q99733 375 aaKnown RBP8.79□□□□□ -1
HDAC3-216ENST00000523088 HOXC10Q9NYD6 342 aa8.79□□□□□ -1
HDAC3-216ENST00000523088 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.79□□□□□ -1
HDAC3-216ENST00000523088 A0A0G2JLW4 131 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 ERICH4A6NGS2 130 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 VAMP4O75379 141 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 SERPINB2P05120 415 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 PDE6BP35913 854 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 ST5P78524 1137 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 PDIA5Q14554 519 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 E2F5Q15329 346 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 DNAJC21Q5F1R6 531 aaKnown RBP8.78□□□□□ -1
HDAC3-216ENST00000523088 CCDC30Q5VVM6 783 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 SASS6Q6UVJ0 657 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 NOP9Q86U38 636 aaKnown RBP8.78□□□□□ -1
HDAC3-216ENST00000523088 SUGP1Q8IWZ8 645 aaKnown RBP8.78□□□□□ -1
HDAC3-216ENST00000523088 ELOA2Q8IYF1 753 aaPredicted RBP8.78□□□□□ -1
HDAC3-216ENST00000523088 LARGE2Q8N3Y3 721 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 GOLGA1Q92805 767 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 ZBTB9Q96C00 473 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 SETDB2Q96T68 719 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 BABAM1Q9NWV8 329 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 TMOD4Q9NZQ9 345 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 RSPH14Q9UHP6 348 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 ANKRD31Q8N7Z5 1873 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 DICER1Q9UPY3 1922 aaKnown RBP8.78□□□□□ -1
HDAC3-216ENST00000523088 ERBB4Q15303 1308 aa8.78□□□□□ -1
HDAC3-216ENST00000523088 MYBBP1AQ9BQG0 1328 aaKnown RBP8.78□□□□□ -1
HDAC3-216ENST00000523088 UQCRHLA0A096LP55 91 aa8.77□□□□□ -1.01
HDAC3-216ENST00000523088 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.77□□□□□ -1.01
HDAC3-216ENST00000523088 H0YIN7 160 aa8.77□□□□□ -1.01
HDAC3-216ENST00000523088 CAND2O75155 1236 aa8.77□□□□□ -1.01
HDAC3-216ENST00000523088 MTA2O94776 668 aa8.77□□□□□ -1.01
HDAC3-216ENST00000523088 OATP04181 439 aa8.77□□□□□ -1.01
HDAC3-216ENST00000523088 UQCRHP07919 91 aa8.77□□□□□ -1.01
HDAC3-216ENST00000523088 MSL3P1P0C860 447 aa8.77□□□□□ -1.01
HDAC3-216ENST00000523088 XRCC6P12956 609 aaKnown RBP eCLIP8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms