RNA–Protein interactions for RNA: ENST00000474020.5

ATPAF1-204, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 535 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-204ENST00000474020 AATKQ6ZMQ8 1374 aa7.44□□□□□ -1.22
ATPAF1-204ENST00000474020 PNPLA6Q8IY17 1366 aa7.44□□□□□ -1.22
ATPAF1-204ENST00000474020 PLEKHG1Q9ULL1 1385 aa7.44□□□□□ -1.22
ATPAF1-204ENST00000474020 COL3A1P02461 1466 aaPredicted RBP7.43□□□□□ -1.22
ATPAF1-204ENST00000474020 CD163L1Q9NR16 1453 aa7.43□□□□□ -1.22
ATPAF1-204ENST00000474020 CDK12Q9NYV4 1490 aaPredicted RBP7.43□□□□□ -1.22
ATPAF1-204ENST00000474020 CDC42BPGQ6DT37 1551 aa7.43□□□□□ -1.22
ATPAF1-204ENST00000474020 AMPD1P23109 780 aa7.43□□□□□ -1.22
ATPAF1-204ENST00000474020 XP32Q5T750 250 aa7.43□□□□□ -1.22
ATPAF1-204ENST00000474020 ALYREFQ86V81 257 aaKnown RBP7.43□□□□□ -1.22
ATPAF1-204ENST00000474020 DZIP1LQ8IYY4 767 aaKnown RBP7.43□□□□□ -1.22
ATPAF1-204ENST00000474020 ALDH16A1Q8IZ83 802 aa7.43□□□□□ -1.22
ATPAF1-204ENST00000474020 HINFPQ9BQA5 517 aa7.43□□□□□ -1.22
ATPAF1-204ENST00000474020 KRTAP4-8Q9BYQ9 185 aa7.43□□□□□ -1.22
ATPAF1-204ENST00000474020 RRAGCQ9HB90 399 aa7.43□□□□□ -1.22
ATPAF1-204ENST00000474020 PRR12Q9ULL5 1215 aa7.43□□□□□ -1.22
ATPAF1-204ENST00000474020 DDX19BQ9UMR2 479 aa7.43□□□□□ -1.22
ATPAF1-204ENST00000474020 HOXB4P17483 251 aaPredicted RBP7.42□□□□□ -1.22
ATPAF1-204ENST00000474020 RGS3P49796 1198 aa7.42□□□□□ -1.22
ATPAF1-204ENST00000474020 GNAI1P63096 354 aa7.42□□□□□ -1.22
ATPAF1-204ENST00000474020 MVPQ14764 893 aaKnown RBP7.42□□□□□ -1.22
ATPAF1-204ENST00000474020 FCHSD1Q86WN1 690 aa7.42□□□□□ -1.22
ATPAF1-204ENST00000474020 HSH2DQ96JZ2 352 aa7.42□□□□□ -1.22
ATPAF1-204ENST00000474020 BTBD6Q96KE9 485 aa7.42□□□□□ -1.22
ATPAF1-204ENST00000474020 ARXQ96QS3 562 aa7.42□□□□□ -1.22
ATPAF1-204ENST00000474020 METP08581 1390 aa7.42□□□□□ -1.22
ATPAF1-204ENST00000474020 CPSF1Q10570 1443 aaKnown RBP7.42□□□□□ -1.22
ATPAF1-204ENST00000474020 IGFBP4P22692 258 aa7.41□□□□□ -1.22
ATPAF1-204ENST00000474020 PRKAR2BP31323 418 aa7.41□□□□□ -1.22
ATPAF1-204ENST00000474020 PCBP4P57723 403 aaKnown RBP7.41□□□□□ -1.22
ATPAF1-204ENST00000474020 EXOSC9Q06265 439 aaKnown RBP7.41□□□□□ -1.22
ATPAF1-204ENST00000474020 NFE2L2Q16236 605 aa7.41□□□□□ -1.22
ATPAF1-204ENST00000474020 HIF1AQ16665 826 aa7.41□□□□□ -1.22
ATPAF1-204ENST00000474020 ALDH1L2Q3SY69 923 aa7.41□□□□□ -1.22
ATPAF1-204ENST00000474020 THEMISQ8N1K5 641 aaPredicted RBP7.41□□□□□ -1.22
ATPAF1-204ENST00000474020 PANK1Q8TE04 598 aa7.41□□□□□ -1.22
ATPAF1-204ENST00000474020 DCAF5Q96JK2 942 aa7.41□□□□□ -1.22
ATPAF1-204ENST00000474020 SUSD3Q96L08 255 aa7.41□□□□□ -1.22
ATPAF1-204ENST00000474020 PLEKHF1Q96S99 279 aa7.41□□□□□ -1.22
ATPAF1-204ENST00000474020 DIP2AQ14689 1571 aa7.41□□□□□ -1.22
ATPAF1-204ENST00000474020 SETD1AO15047 1707 aaKnown RBP7.41□□□□□ -1.22
ATPAF1-204ENST00000474020 EIF5BO60841 1220 aaKnown RBP7.4□□□□□ -1.22
ATPAF1-204ENST00000474020 KCNQ4P56696 695 aa7.4□□□□□ -1.22
ATPAF1-204ENST00000474020 TYRO3Q06418 890 aa7.4□□□□□ -1.22
ATPAF1-204ENST00000474020 SFSWAPQ12872 951 aaKnown RBP7.4□□□□□ -1.22
ATPAF1-204ENST00000474020 ITPRIPQ8IWB1 547 aa7.4□□□□□ -1.22
ATPAF1-204ENST00000474020 ZNF280CQ8ND82 737 aa7.4□□□□□ -1.22
ATPAF1-204ENST00000474020 CEP63Q96MT8 703 aa7.4□□□□□ -1.22
ATPAF1-204ENST00000474020 BRD7Q9NPI1 651 aa7.4□□□□□ -1.22
ATPAF1-204ENST00000474020 POLKQ9UBT6 870 aa7.4□□□□□ -1.22
ATPAF1-204ENST00000474020 NRXN3Q9Y4C0 1643 aa7.4□□□□□ -1.22
ATPAF1-204ENST00000474020 ITSN1Q15811 1721 aa7.4□□□□□ -1.23
ATPAF1-204ENST00000474020 UBR1Q8IWV7 1749 aa7.4□□□□□ -1.23
ATPAF1-204ENST00000474020 LRRC7Q96NW7 1537 aa7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 TTC21BQ7Z4L5 1316 aa7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 TTC21AQ8NDW8 1320 aa7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 DGKGP49619 791 aa7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 BECN1Q14457 450 aa7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 RTN1Q16799 776 aa7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 GPAT2Q6NUI2 795 aa7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 ATF7IPQ6VMQ6 1270 aa7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 LINC00114Q6XXX2 140 aa7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 CHSY3Q70JA7 882 aa7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 SYT9Q86SS6 491 aa7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 NME9Q86XW9 330 aa7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 TSR2Q969E8 191 aaKnown RBP7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 NGLY1Q96IV0 654 aa7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 BCL2L13Q9BXK5 485 aa7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 IFT57Q9NWB7 429 aa7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 LAS1LQ9Y4W2 734 aaKnown RBP7.39□□□□□ -1.23
ATPAF1-204ENST00000474020 PTCH1Q13635 1447 aa7.38□□□□□ -1.23
ATPAF1-204ENST00000474020 SIN3BO75182 1162 aa7.38□□□□□ -1.23
ATPAF1-204ENST00000474020 LGR5O75473 907 aa7.38□□□□□ -1.23
ATPAF1-204ENST00000474020 GRIN2CQ14957 1233 aa7.38□□□□□ -1.23
ATPAF1-204ENST00000474020 FAM200AQ8TCP9 573 aa7.38□□□□□ -1.23
ATPAF1-204ENST00000474020 SLC30A3Q99726 388 aa7.38□□□□□ -1.23
ATPAF1-204ENST00000474020 MDFIQ99750 246 aa7.38□□□□□ -1.23
ATPAF1-204ENST00000474020 ZMYND15Q9H091 742 aa7.38□□□□□ -1.23
ATPAF1-204ENST00000474020 USP35Q9P2H5 1018 aa7.38□□□□□ -1.23
ATPAF1-204ENST00000474020 TBX22Q9Y458 520 aa7.38□□□□□ -1.23
ATPAF1-204ENST00000474020 MON2Q7Z3U7 1717 aa7.38□□□□□ -1.23
ATPAF1-204ENST00000474020 SLIT1O75093 1534 aa7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 ADAMTS13Q76LX8 1427 aa7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 ELOA3CA0A087WX78 387 aaPredicted RBP7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 ELOA3DA6NLF2 546 aaPredicted RBP7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 GNB5O14775 395 aa7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 FOXO3O43524 673 aa7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 RFX1P22670 979 aa7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 WEE1P30291 646 aa7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 IL13P35225 146 aa7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 SPEM2Q0P670 501 aa7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 PLA2G4EQ3MJ16 856 aa7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 ELOA3BQ3SY89 546 aa7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 IER5Q5VY09 327 aa7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 BTLAQ7Z6A9 289 aa7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 NGDNQ8NEJ9 315 aaKnown RBP7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 ELOA3Q8NG57 546 aa7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 ARHGAP45Q92619 1136 aa7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 API5Q9BZZ5 524 aaKnown RBP7.37□□□□□ -1.23
ATPAF1-204ENST00000474020 KCNH4Q9UQ05 1017 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms