RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W ROT1Q03691 256 aa4.35□□□□□ -1.71
SSL1YLR005W CRD1Q07560 283 aa4.35□□□□□ -1.71
SSL1YLR005W WHI4Q07655 649 aaKnown RBP4.35□□□□□ -1.71
SSL1YLR005W ARP6Q12509 438 aa4.35□□□□□ -1.71
SSL1YLR005W FMP27Q06179 2628 aa4.35□□□□□ -1.71
SSL1YLR005W TEL1P38110 2787 aa4.35□□□□□ -1.71
SSL1YLR005W SEN1Q00416 2231 aaKnown RBP4.34□□□□□ -1.71
SSL1YLR005W CYC1P00044 109 aaPredicted RBP4.34□□□□□ -1.71
SSL1YLR005W SOD2P00447 233 aa4.34□□□□□ -1.71
SSL1YLR005W MBR1P23493 339 aa4.34□□□□□ -1.71
SSL1YLR005W EFT1P32324 842 aaKnown RBP4.34□□□□□ -1.71
SSL1YLR005W YAP1801P38856 637 aa4.34□□□□□ -1.71
SSL1YLR005W PIK1P39104 1066 aa4.34□□□□□ -1.71
SSL1YLR005W SPO22P40511 975 aa4.34□□□□□ -1.71
SSL1YLR005W SEC26P41810 973 aaKnown RBP4.34□□□□□ -1.71
SSL1YLR005W BNI5P53890 448 aaKnown RBP4.34□□□□□ -1.71
SSL1YLR005W GDE1Q02979 1223 aa4.34□□□□□ -1.71
SSL1YLR005W SMC5Q08204 1093 aa4.34□□□□□ -1.71
SSL1YLR005W YOR352WQ08816 343 aa4.34□□□□□ -1.71
SSL1YLR005W PRC1P00729 532 aa4.33□□□□□ -1.72
SSL1YLR005W RXT2P38255 430 aa4.33□□□□□ -1.72
SSL1YLR005W OPY1P38271 328 aa4.33□□□□□ -1.72
SSL1YLR005W RGD1P38339 666 aa4.33□□□□□ -1.72
SSL1YLR005W RPN3P40016 523 aaKnown RBP4.33□□□□□ -1.72
SSL1YLR005W CNN1P43618 361 aa4.33□□□□□ -1.72
SSL1YLR005W ORC4P54791 529 aa4.33□□□□□ -1.72
SSL1YLR005W MFM1Q02783 413 aa4.33□□□□□ -1.72
SSL1YLR005W MUK1Q02866 612 aa4.33□□□□□ -1.72
SSL1YLR005W HCR1Q05775 265 aaKnown RBP4.33□□□□□ -1.72
SSL1YLR005W RPS9AO13516 197 aaKnown RBP4.32□□□□□ -1.72
SSL1YLR005W WHI2P12611 486 aa4.32□□□□□ -1.72
SSL1YLR005W DBP5P20449 482 aaKnown RBP4.32□□□□□ -1.72
SSL1YLR005W IMG2P25642 146 aaPredicted RBP4.32□□□□□ -1.72
SSL1YLR005W ASF1P32447 279 aa4.32□□□□□ -1.72
SSL1YLR005W BMH2P34730 273 aaKnown RBP4.32□□□□□ -1.72
SSL1YLR005W LAM1P38851 1228 aa4.32□□□□□ -1.72
SSL1YLR005W GPD2P41911 440 aaKnown RBP4.32□□□□□ -1.72
SSL1YLR005W YFL052WP43551 465 aa4.32□□□□□ -1.72
SSL1YLR005W PLB2Q03674 706 aa4.32□□□□□ -1.72
SSL1YLR005W CSM3Q04659 317 aa4.32□□□□□ -1.72
SSL1YLR005W SDH5Q08230 162 aa4.32□□□□□ -1.72
SSL1YLR005W PCD1Q12524 340 aa4.32□□□□□ -1.72
SSL1YLR005W CCH1P50077 2039 aa4.32□□□□□ -1.72
SSL1YLR005W ADE2P21264 571 aaKnown RBP4.31□□□□□ -1.72
SSL1YLR005W RAD27P26793 382 aa4.31□□□□□ -1.72
SSL1YLR005W UBP11P36026 717 aa4.31□□□□□ -1.72
SSL1YLR005W MCM7P38132 845 aa4.31□□□□□ -1.72
SSL1YLR005W YHL026CP38740 315 aa4.31□□□□□ -1.72
SSL1YLR005W YHR202WP38887 602 aa4.31□□□□□ -1.72
SSL1YLR005W MEF2P39677 819 aa4.31□□□□□ -1.72
SSL1YLR005W MOB1P40484 314 aa4.31□□□□□ -1.72
SSL1YLR005W FAF1P40546 346 aaPredicted RBP4.31□□□□□ -1.72
SSL1YLR005W MPH1P40562 993 aa4.31□□□□□ -1.72
SSL1YLR005W BFA1P47113 574 aa4.31□□□□□ -1.72
SSL1YLR005W ENT3P47160 408 aa4.31□□□□□ -1.72
SSL1YLR005W SPT20P50875 604 aa4.31□□□□□ -1.72
SSL1YLR005W YGL138CP53122 345 aa4.31□□□□□ -1.72
SSL1YLR005W PNG1Q02890 363 aa4.31□□□□□ -1.72
SSL1YLR005W TIF35Q04067 274 aaKnown RBP4.31□□□□□ -1.72
SSL1YLR005W CEX1Q12453 761 aa4.31□□□□□ -1.72
SSL1YLR005W ILV1P00927 576 aaKnown RBP4.3□□□□□ -1.72
SSL1YLR005W MET6P05694 767 aaKnown RBP4.3□□□□□ -1.72
SSL1YLR005W TCP1P12612 559 aaKnown RBP4.3□□□□□ -1.72
SSL1YLR005W CMP2P14747 604 aa4.3□□□□□ -1.72
SSL1YLR005W STI1P15705 589 aaKnown RBP RIP-Chip data4.3□□□□□ -1.72not detected
SSL1YLR005W CDC48P25694 835 aaKnown RBP4.3□□□□□ -1.72
SSL1YLR005W ADK2P26364 225 aa4.3□□□□□ -1.72
SSL1YLR005W PPZ1P26570 692 aa4.3□□□□□ -1.72
SSL1YLR005W SEC21P32074 935 aaKnown RBP4.3□□□□□ -1.72
SSL1YLR005W RFC5P38251 354 aa4.3□□□□□ -1.72
SSL1YLR005W EAF5P39995 279 aa4.3□□□□□ -1.72
SSL1YLR005W FIS1P40515 155 aa4.3□□□□□ -1.72
SSL1YLR005W RET3P53600 189 aa4.3□□□□□ -1.72
SSL1YLR005W RSM24Q03976 319 aa4.3□□□□□ -1.72
SSL1YLR005W AIM33Q04516 312 aa4.3□□□□□ -1.72
SSL1YLR005W COQ9Q05779 260 aa4.3□□□□□ -1.72
SSL1YLR005W SMD2Q06217 110 aaKnown RBP4.3□□□□□ -1.72
SSL1YLR005W IRC10Q08118 586 aa4.3□□□□□ -1.72
SSL1YLR005W RTT10Q08924 1013 aa4.3□□□□□ -1.72
SSL1YLR005W PGA3Q12746 312 aaKnown RBP4.3□□□□□ -1.72
SSL1YLR005W GAL10P04397 699 aa4.29□□□□□ -1.72
SSL1YLR005W CLN3P13365 580 aa4.29□□□□□ -1.72
SSL1YLR005W BET2P20133 325 aa4.29□□□□□ -1.72
SSL1YLR005W GSY1P23337 708 aa4.29□□□□□ -1.72
SSL1YLR005W BRN1P38170 754 aa4.29□□□□□ -1.72
SSL1YLR005W RIM4P38741 713 aa4.29□□□□□ -1.72
SSL1YLR005W GAA1P39012 614 aa4.29□□□□□ -1.72
SSL1YLR005W VID28P40547 921 aa4.29□□□□□ -1.72
SSL1YLR005W LAM5P43560 674 aa4.29□□□□□ -1.72
SSL1YLR005W GCN5Q03330 439 aa4.29□□□□□ -1.72
SSL1YLR005W YDR132CQ03900 495 aa4.29□□□□□ -1.72
SSL1YLR005W MRN1Q08925 612 aaKnown RBP RIP-Chip data4.29□□□□□ -1.72not detected
SSL1YLR005W SVS1Q12254 260 aa4.29□□□□□ -1.72
SSL1YLR005W SNF1P06782 633 aaKnown RBP4.28□□□□□ -1.72
SSL1YLR005W SRD1P09007 221 aa4.28□□□□□ -1.72
SSL1YLR005W THR4P16120 514 aaKnown RBP4.28□□□□□ -1.72
SSL1YLR005W BAS1P22035 811 aa4.28□□□□□ -1.72
SSL1YLR005W PRP22P24384 1145 aaKnown RBP4.28□□□□□ -1.72
SSL1YLR005W DBP2P24783 546 aaKnown RBP4.28□□□□□ -1.72
SSL1YLR005W APL1P27351 700 aa4.28□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 99 ms