RNA–Protein interactions for RNA: YDR427W

RPN9, Transcript of Non-ATPase regulatory subunit of the 26S proteasome, yeast

Gene RPN9, Length 1,182 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN9	YDR427W	TDA3	P38758	523 aa		4.76	□□□□□ -1.65
RPN9	YDR427W	FMO1	P38866	432 aa		4.76	□□□□□ -1.65
RPN9	YDR427W	YHR202W	P38887	602 aa		4.76	□□□□□ -1.65
RPN9	YDR427W	HXT6	P39003	570 aa	Known RBP	4.76	□□□□□ -1.65
RPN9	YDR427W	HXT7	P39004	570 aa		4.76	□□□□□ -1.65
RPN9	YDR427W	CTR1	P49573	406 aa		4.76	□□□□□ -1.65
RPN9	YDR427W	YGR237C	P50089	785 aa		4.76	□□□□□ -1.65
RPN9	YDR427W	ECM9	Q02202	377 aa		4.76	□□□□□ -1.65
RPN9	YDR427W	RGC1	Q06108	1083 aa	Known RBP	4.76	□□□□□ -1.65
RPN9	YDR427W	YTM1	Q12024	460 aa	Predicted RBP	4.76	□□□□□ -1.65
RPN9	YDR427W	NUP145	P49687	1317 aa		4.75	□□□□□ -1.65
RPN9	YDR427W	SWI6	P09959	803 aa		4.75	□□□□□ -1.65
RPN9	YDR427W	SEC6	P32844	805 aa		4.75	□□□□□ -1.65
RPN9	YDR427W	HFD1	Q04458	532 aa		4.75	□□□□□ -1.65
RPN9	YDR427W	YKL033W-A	Q86ZR7	236 aa		4.75	□□□□□ -1.65
RPN9	YDR427W	PTP1	P25044	335 aa		4.74	□□□□□ -1.65
RPN9	YDR427W	GRX4	P32642	244 aa		4.74	□□□□□ -1.65
RPN9	YDR427W	OAF1	P39720	1047 aa	Predicted RBP	4.74	□□□□□ -1.65
RPN9	YDR427W	PAC2	P39937	518 aa		4.74	□□□□□ -1.65
RPN9	YDR427W	YNL195C	P40168	261 aa		4.74	□□□□□ -1.65
RPN9	YDR427W	RSC8	P43609	557 aa	Known RBP	4.74	□□□□□ -1.65
RPN9	YDR427W	MNN11	P46985	422 aa	Known RBP	4.74	□□□□□ -1.65
RPN9	YDR427W	PAN2	P53010	1115 aa	Predicted RBP	4.74	□□□□□ -1.65
RPN9	YDR427W	ISA1	Q07821	250 aa	Predicted RBP	4.74	□□□□□ -1.65
RPN9	YDR427W	HFI1	Q12060	488 aa		4.74	□□□□□ -1.65
RPN9	YDR427W	APM4	Q99186	491 aa		4.74	□□□□□ -1.65
RPN9	YDR427W	IMG2	P25642	146 aa	Predicted RBP	4.73	□□□□□ -1.65
RPN9	YDR427W	YKU70	P32807	602 aa		4.73	□□□□□ -1.65
RPN9	YDR427W	UBS1	P38290	277 aa		4.73	□□□□□ -1.65
RPN9	YDR427W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.73	□□□□□ -1.65	not detected
RPN9	YDR427W	YGR153W	P48238	217 aa		4.73	□□□□□ -1.65
RPN9	YDR427W	FHN1	P53279	174 aa		4.73	□□□□□ -1.65
RPN9	YDR427W	YLR407W	Q06070	228 aa		4.73	□□□□□ -1.65
RPN9	YDR427W	THI22	Q06490	572 aa		4.73	□□□□□ -1.65
RPN9	YDR427W	VHS3	Q08438	674 aa		4.73	□□□□□ -1.65
RPN9	YDR427W	RPS21B	Q3E754	87 aa	Known RBP	4.73	□□□□□ -1.65
RPN9	YDR427W	MVD1	P32377	396 aa	Known RBP	4.72	□□□□□ -1.65
RPN9	YDR427W	PET127	P32606	800 aa		4.72	□□□□□ -1.65
RPN9	YDR427W	DID4	P36108	232 aa		4.72	□□□□□ -1.65
RPN9	YDR427W	SFB3	P38810	929 aa		4.72	□□□□□ -1.65
RPN9	YDR427W	MRK1	P50873	501 aa		4.72	□□□□□ -1.65
RPN9	YDR427W	COX18	P53239	316 aa		4.72	□□□□□ -1.65
RPN9	YDR427W	VPS36	Q06696	566 aa		4.72	□□□□□ -1.65
RPN9	YDR427W	FAP7	Q12055	197 aa	Predicted RBP	4.72	□□□□□ -1.65
RPN9	YDR427W	ECM3	Q99252	613 aa		4.72	□□□□□ -1.65
RPN9	YDR427W	FRS1	P15624	595 aa	Known RBP	4.71	□□□□□ -1.66
RPN9	YDR427W	IME1	P21190	360 aa		4.71	□□□□□ -1.66
RPN9	YDR427W	YUR1	P26725	428 aa		4.71	□□□□□ -1.66
RPN9	YDR427W	OAF3	P36023	863 aa		4.71	□□□□□ -1.66
RPN9	YDR427W	YKR075C	P36155	307 aa		4.71	□□□□□ -1.66
RPN9	YDR427W	YEN1	P40028	759 aa		4.71	□□□□□ -1.66
RPN9	YDR427W	LTP1	P40347	161 aa		4.71	□□□□□ -1.66
RPN9	YDR427W	BNA3	P47039	444 aa	Known RBP	4.71	□□□□□ -1.66
RPN9	YDR427W	BIT61	P47041	543 aa		4.71	□□□□□ -1.66
RPN9	YDR427W	YMR210W	Q03649	449 aa		4.71	□□□□□ -1.66
RPN9	YDR427W	YPS7	Q06325	596 aa		4.71	□□□□□ -1.66
RPN9	YDR427W	DIA2	Q08496	732 aa	Predicted RBP	4.71	□□□□□ -1.66
RPN9	YDR427W	SLK19	Q08581	821 aa	Known RBP	4.71	□□□□□ -1.66
RPN9	YDR427W	RPS21A	P0C0V8	87 aa	Known RBP	4.7	□□□□□ -1.66
RPN9	YDR427W	SEC65	P29478	273 aa		4.7	□□□□□ -1.66
RPN9	YDR427W	BCS1	P32839	456 aa		4.7	□□□□□ -1.66
RPN9	YDR427W	PHO11	P35842	467 aa		4.7	□□□□□ -1.66
RPN9	YDR427W	BIT2	P38346	545 aa		4.7	□□□□□ -1.66
RPN9	YDR427W	PHO12	P38693	467 aa		4.7	□□□□□ -1.66
RPN9	YDR427W	BFA1	P47113	574 aa		4.7	□□□□□ -1.66
RPN9	YDR427W	NOP15	P53927	220 aa	Predicted RBP	4.7	□□□□□ -1.66
RPN9	YDR427W	MLH3	Q12083	715 aa		4.7	□□□□□ -1.66
RPN9	YDR427W	CLF1	Q12309	687 aa	Predicted RBP	4.7	□□□□□ -1.66
RPN9	YDR427W	ZRT2	Q12436	422 aa		4.7	□□□□□ -1.66
RPN9	YDR427W	PRP28	P23394	588 aa		4.69	□□□□□ -1.66
RPN9	YDR427W	FAT1	P38225	669 aa		4.69	□□□□□ -1.66
RPN9	YDR427W	IES1	P43579	692 aa		4.69	□□□□□ -1.66
RPN9	YDR427W	DUG1	P43616	481 aa	Known RBP	4.69	□□□□□ -1.66
RPN9	YDR427W	RCR2	Q03446	210 aa	Known RBP	4.69	□□□□□ -1.66
RPN9	YDR427W	YHM2	Q04013	314 aa		4.69	□□□□□ -1.66
RPN9	YDR427W	STP4	Q07351	490 aa		4.69	□□□□□ -1.66
RPN9	YDR427W	OSW1	Q08692	278 aa		4.69	□□□□□ -1.66
RPN9	YDR427W	POM34	Q12445	299 aa		4.69	□□□□□ -1.66
RPN9	YDR427W	RPS17A	P02407	136 aa	Known RBP	4.68	□□□□□ -1.66
RPN9	YDR427W	ERG20	P08524	352 aa	Known RBP	4.68	□□□□□ -1.66
RPN9	YDR427W	RPS17B	P14127	136 aa	Known RBP	4.68	□□□□□ -1.66
RPN9	YDR427W	FEN2	P25621	512 aa	Known RBP	4.68	□□□□□ -1.66
RPN9	YDR427W	BUD8	P41698	603 aa		4.68	□□□□□ -1.66
RPN9	YDR427W	NET1	P47035	1189 aa		4.68	□□□□□ -1.66
RPN9	YDR427W	ATG4	P53867	494 aa		4.68	□□□□□ -1.66
RPN9	YDR427W	RGT2	Q12300	763 aa		4.68	□□□□□ -1.66
RPN9	YDR427W	THR1	P17423	357 aa	Known RBP	4.67	□□□□□ -1.66
RPN9	YDR427W	EUG1	P32474	517 aa		4.67	□□□□□ -1.66
RPN9	YDR427W	GPP2	P40106	250 aa	Known RBP	4.67	□□□□□ -1.66
RPN9	YDR427W	PIG2	P40187	538 aa		4.67	□□□□□ -1.66
RPN9	YDR427W	PTA1	Q01329	785 aa	Predicted RBP	4.67	□□□□□ -1.66
RPN9	YDR427W	TSR4	P25040	408 aa		4.66	□□□□□ -1.66
RPN9	YDR427W	KIN82	P25341	720 aa		4.66	□□□□□ -1.66
RPN9	YDR427W	PAF1	P38351	445 aa		4.66	□□□□□ -1.66
RPN9	YDR427W	MUP3	P38734	546 aa		4.66	□□□□□ -1.66
RPN9	YDR427W	VBA4	Q04602	768 aa	Known RBP	4.66	□□□□□ -1.66
RPN9	YDR427W	CHS5	Q12114	671 aa	Known RBP	4.66	□□□□□ -1.66
RPN9	YDR427W	ERG11	P10614	530 aa		4.65	□□□□□ -1.67
RPN9	YDR427W	CDC26	P14724	124 aa		4.65	□□□□□ -1.67
RPN9	YDR427W	MSS1	P32559	526 aa	Predicted RBP	4.65	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 98.2 ms