RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 ARL4DP49703 201 aa6.77□□□□□ -1.33
USP48-215ENST00000534705 NCAPG2Q86XI2 1143 aa6.77□□□□□ -1.33
USP48-215ENST00000534705 PRIMPOLQ96LW4 560 aa6.77□□□□□ -1.33
USP48-215ENST00000534705 BSDC1Q9NW68 430 aaPredicted RBP6.77□□□□□ -1.33
USP48-215ENST00000534705 ATP2B4P23634 1241 aa6.76□□□□□ -1.33
USP48-215ENST00000534705 FBXL6Q8N531 539 aa6.76□□□□□ -1.33
USP48-215ENST00000534705 CEP120Q8N960 986 aa6.76□□□□□ -1.33
USP48-215ENST00000534705 POP1Q99575 1024 aaKnown RBP6.76□□□□□ -1.33
USP48-215ENST00000534705 KRTAP4-2Q9BYR5 136 aa6.76□□□□□ -1.33
USP48-215ENST00000534705 ABI2Q9NYB9 513 aaPredicted RBP6.76□□□□□ -1.33
USP48-215ENST00000534705 SLAIN2Q9P270 581 aa6.76□□□□□ -1.33
USP48-215ENST00000534705 PDE4CQ08493 712 aa6.75□□□□□ -1.33
USP48-215ENST00000534705 C16orf46Q6P387 395 aa6.75□□□□□ -1.33
USP48-215ENST00000534705 PAOXQ6QHF9 649 aa6.75□□□□□ -1.33
USP48-215ENST00000534705 ARID3AQ99856 593 aa6.75□□□□□ -1.33
USP48-215ENST00000534705 CYP26A1O43174 497 aa6.74□□□□□ -1.33
USP48-215ENST00000534705 NLRP12P59046 1061 aa6.74□□□□□ -1.33
USP48-215ENST00000534705 SGO2Q562F6 1265 aa6.74□□□□□ -1.33
USP48-215ENST00000534705 NUTM2GQ5VZR2 741 aa6.74□□□□□ -1.33
USP48-215ENST00000534705 B4GALNT3Q6L9W6 998 aa6.74□□□□□ -1.33
USP48-215ENST00000534705 ADAMTSL4Q6UY14 1074 aa6.74□□□□□ -1.33
USP48-215ENST00000534705 CYP4F12Q9HCS2 524 aa6.74□□□□□ -1.33
USP48-215ENST00000534705 FAM95CA0A1B0GW59 222 aa6.73□□□□□ -1.33
USP48-215ENST00000534705 NFKBIBQ15653 356 aa6.73□□□□□ -1.33
USP48-215ENST00000534705 C12orf50Q8NA57 414 aaPredicted RBP6.73□□□□□ -1.33
USP48-215ENST00000534705 SSFA2P28290 1259 aa6.72□□□□□ -1.33
USP48-215ENST00000534705 C19orf57Q0VDD7 668 aa6.72□□□□□ -1.33
USP48-215ENST00000534705 SMG8Q8ND04 991 aaKnown RBP6.72□□□□□ -1.33
USP48-215ENST00000534705 FLCNQ8NFG4 579 aa6.72□□□□□ -1.33
USP48-215ENST00000534705 YIPF2Q9BWQ6 316 aa6.72□□□□□ -1.33
USP48-215ENST00000534705 SUGCTQ9HAC7 445 aa6.72□□□□□ -1.33
USP48-215ENST00000534705 BIN1O00499 593 aa6.71□□□□□ -1.34
USP48-215ENST00000534705 ZAP70P43403 619 aa6.71□□□□□ -1.34
USP48-215ENST00000534705 USP11P51784 963 aa6.71□□□□□ -1.34
USP48-215ENST00000534705 FBLN7Q53RD9 439 aa6.71□□□□□ -1.34
USP48-215ENST00000534705 PDE12Q6L8Q7 609 aaKnown RBP6.71□□□□□ -1.34
USP48-215ENST00000534705 NFXL1Q6ZNB6 911 aa6.71□□□□□ -1.34
USP48-215ENST00000534705 SLC7A3Q8WY07 619 aa6.71□□□□□ -1.34
USP48-215ENST00000534705 TMPRSS13Q9BYE2 586 aa6.71□□□□□ -1.34
USP48-215ENST00000534705 SAP130Q9H0E3 1048 aa6.71□□□□□ -1.34
USP48-215ENST00000534705 DBX1A6NMT0 343 aa6.7□□□□□ -1.34
USP48-215ENST00000534705 RETREG2Q8NC44 543 aa6.7□□□□□ -1.34
USP48-215ENST00000534705 MKNK1Q9BUB5 465 aa6.7□□□□□ -1.34
USP48-215ENST00000534705 TNFRSF10BO14763 440 aa6.69□□□□□ -1.34
USP48-215ENST00000534705 TIAF1O95411 115 aa6.69□□□□□ -1.34
USP48-215ENST00000534705 CYP2E1P05181 493 aaPredicted RBP6.69□□□□□ -1.34
USP48-215ENST00000534705 COL19A1Q14993 1142 aa6.69□□□□□ -1.34
USP48-215ENST00000534705 DUSP27Q5VZP5 1158 aa6.69□□□□□ -1.34
USP48-215ENST00000534705 GPR152Q8TDT2 470 aa6.69□□□□□ -1.34
USP48-215ENST00000534705 TBC1D32Q96NH3 1257 aa6.69□□□□□ -1.34
USP48-215ENST00000534705 MTMR7Q9Y216 660 aa6.69□□□□□ -1.34
USP48-215ENST00000534705 PDE2AO00408 941 aaPredicted RBP6.68□□□□□ -1.34
USP48-215ENST00000534705 EIF4EBP3O60516 100 aaPredicted RBP6.68□□□□□ -1.34
USP48-215ENST00000534705 RPLP1P05386 114 aaKnown RBP6.68□□□□□ -1.34
USP48-215ENST00000534705 CYP27A1Q02318 531 aa6.68□□□□□ -1.34
USP48-215ENST00000534705 EXOSC6Q5RKV6 272 aaKnown RBP6.68□□□□□ -1.34
USP48-215ENST00000534705 PHLDB3Q6NSJ2 640 aa6.68□□□□□ -1.34
USP48-215ENST00000534705 ZAR1Q86SH2 424 aa6.68□□□□□ -1.34
USP48-215ENST00000534705 ELP3Q9H9T3 547 aa6.68□□□□□ -1.34
USP48-215ENST00000534705 PAK6Q9NQU5 681 aaPredicted RBP6.68□□□□□ -1.34
USP48-215ENST00000534705 SALL4Q9UJQ4 1053 aa6.68□□□□□ -1.34
USP48-215ENST00000534705 CAPN12Q6ZSI9 719 aa6.67□□□□□ -1.34
USP48-215ENST00000534705 ABTB2Q8N961 1025 aa6.67□□□□□ -1.34
USP48-215ENST00000534705 HELQQ8TDG4 1101 aa6.67□□□□□ -1.34
USP48-215ENST00000534705 PMEPA1Q969W9 287 aa6.67□□□□□ -1.34
USP48-215ENST00000534705 PRKAG2Q9UGJ0 569 aa6.67□□□□□ -1.34
USP48-215ENST00000534705 SOX13Q9UN79 622 aa6.67□□□□□ -1.34
USP48-215ENST00000534705 NFKBIEO00221 500 aa6.66□□□□□ -1.34
USP48-215ENST00000534705 FARP2O94887 1054 aaPredicted RBP6.66□□□□□ -1.34
USP48-215ENST00000534705 PKN1Q16512 942 aa6.66□□□□□ -1.34
USP48-215ENST00000534705 FAM26DQ5JW98 314 aa6.66□□□□□ -1.34
USP48-215ENST00000534705 ZNF648Q5T619 568 aaPredicted RBP6.66□□□□□ -1.34
USP48-215ENST00000534705 FBLIM1Q8WUP2 373 aa6.66□□□□□ -1.34
USP48-215ENST00000534705 EZH1Q92800 747 aaPredicted RBP6.66□□□□□ -1.34
USP48-215ENST00000534705 SOX17Q9H6I2 414 aaPredicted RBP6.66□□□□□ -1.34
USP48-215ENST00000534705 DZANK1Q9NVP4 752 aa6.66□□□□□ -1.34
USP48-215ENST00000534705 STIM2Q9P246 746 aa6.66□□□□□ -1.34
USP48-215ENST00000534705 SEPT3Q9UH03 358 aa6.66□□□□□ -1.34
USP48-215ENST00000534705 PAPLNO95428 1278 aa6.65□□□□□ -1.34
USP48-215ENST00000534705 CES1P23141 567 aa6.65□□□□□ -1.34
USP48-215ENST00000534705 ADMP35318 185 aa6.65□□□□□ -1.34
USP48-215ENST00000534705 IKBKEQ14164 716 aa6.65□□□□□ -1.34
USP48-215ENST00000534705 NAA30Q147X3 362 aaPredicted RBP6.65□□□□□ -1.34
USP48-215ENST00000534705 CDPF1Q6NVV7 123 aa6.65□□□□□ -1.34
USP48-215ENST00000534705 ZNF438Q7Z4V0 828 aa6.65□□□□□ -1.34
USP48-215ENST00000534705 SHISA5Q8N114 240 aa6.65□□□□□ -1.34
USP48-215ENST00000534705 TMEM102Q8N9M5 508 aaPredicted RBP6.65□□□□□ -1.34
USP48-215ENST00000534705 USP26Q9BXU7 913 aa6.65□□□□□ -1.34
USP48-215ENST00000534705 TMEM63CQ9P1W3 806 aa6.65□□□□□ -1.34
USP48-215ENST00000534705 KANSL3Q9P2N6 904 aa6.65□□□□□ -1.34
USP48-215ENST00000534705 LOC100289279A0A1B0GTE1 492 aa6.64□□□□□ -1.35
USP48-215ENST00000534705 SOX1O00570 391 aaPredicted RBP6.64□□□□□ -1.35
USP48-215ENST00000534705 MAP7Q14244 749 aa6.64□□□□□ -1.35
USP48-215ENST00000534705 LCE4AQ5TA78 99 aa6.64□□□□□ -1.35
USP48-215ENST00000534705 XKR5Q6UX68 686 aa6.64□□□□□ -1.35
USP48-215ENST00000534705 STK11IPQ8N1F8 1099 aa6.64□□□□□ -1.35
USP48-215ENST00000534705 BSNDQ8WZ55 320 aa6.64□□□□□ -1.35
USP48-215ENST00000534705 ZC3H7BQ9UGR2 993 aaKnown RBP6.64□□□□□ -1.35
USP48-215ENST00000534705 EGFL7Q9UHF1 273 aa6.64□□□□□ -1.35
USP48-215ENST00000534705 SLC5A6Q9Y289 635 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms