RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 IKBKEQ14164 716 aa8.9□□□□□ -0.98
SMC4-223ENST00000493695 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.9□□□□□ -0.98
SMC4-223ENST00000493695 POLIQ9UNA4 740 aa8.9□□□□□ -0.98
SMC4-223ENST00000493695 COL17A1Q9UMD9 1497 aaPredicted RBP8.89□□□□□ -0.99
SMC4-223ENST00000493695 KIAA1324LA8MWY0 1029 aaPredicted RBP8.89□□□□□ -0.99
SMC4-223ENST00000493695 PHACTR2O75167 634 aa8.89□□□□□ -0.99
SMC4-223ENST00000493695 HGSNATQ68CP4 663 aa8.89□□□□□ -0.99
SMC4-223ENST00000493695 GIMAP7Q8NHV1 300 aa8.89□□□□□ -0.99
SMC4-223ENST00000493695 NFKBIEO00221 500 aa8.88□□□□□ -0.99
SMC4-223ENST00000493695 EREGO14944 169 aa8.88□□□□□ -0.99
SMC4-223ENST00000493695 TAL1P17542 331 aaPredicted RBP8.88□□□□□ -0.99
SMC4-223ENST00000493695 MAP4P27816 1152 aaKnown RBP8.88□□□□□ -0.99
SMC4-223ENST00000493695 ALKBH2Q6NS38 261 aa8.88□□□□□ -0.99
SMC4-223ENST00000493695 XKR5Q6UX68 686 aa8.88□□□□□ -0.99
SMC4-223ENST00000493695 BSNDQ8WZ55 320 aa8.88□□□□□ -0.99
SMC4-223ENST00000493695 ZKSCAN3Q9BRR0 538 aa8.88□□□□□ -0.99
SMC4-223ENST00000493695 GOLGA2P5Q9HBQ8 144 aa8.88□□□□□ -0.99
SMC4-223ENST00000493695 ATG3Q9NT62 314 aa8.88□□□□□ -0.99
SMC4-223ENST00000493695 WNT11O96014 354 aa8.87□□□□□ -0.99
SMC4-223ENST00000493695 USP11P51784 963 aa8.87□□□□□ -0.99
SMC4-223ENST00000493695 SGO2Q562F6 1265 aa8.87□□□□□ -0.99
SMC4-223ENST00000493695 TMEM102Q8N9M5 508 aaPredicted RBP8.87□□□□□ -0.99
SMC4-223ENST00000493695 KRTAP4-12Q9BQ66 201 aa8.87□□□□□ -0.99
SMC4-223ENST00000493695 SOX13Q9UN79 622 aa8.87□□□□□ -0.99
SMC4-223ENST00000493695 HIF3AQ9Y2N7 669 aa8.87□□□□□ -0.99
SMC4-223ENST00000493695 PRR19A6NJB7 356 aa8.86□□□□□ -0.99
SMC4-223ENST00000493695 SOX1O00570 391 aaPredicted RBP8.86□□□□□ -0.99
SMC4-223ENST00000493695 EDN3P14138 238 aa8.86□□□□□ -0.99
SMC4-223ENST00000493695 TXKP42681 527 aa8.86□□□□□ -0.99
SMC4-223ENST00000493695 NFKBIBQ15653 356 aa8.86□□□□□ -0.99
SMC4-223ENST00000493695 CHRDQ9H2X0 955 aa8.86□□□□□ -0.99
SMC4-223ENST00000493695 CYP4F12Q9HCS2 524 aa8.86□□□□□ -0.99
SMC4-223ENST00000493695 GSTM4Q03013 218 aa8.85□□□□□ -0.99
SMC4-223ENST00000493695 NXPE3Q969Y0 559 aa8.85□□□□□ -0.99
SMC4-223ENST00000493695 OSBPL1AQ9BXW6 950 aa8.85□□□□□ -0.99
SMC4-223ENST00000493695 FOXD3Q9UJU5 478 aaPredicted RBP8.85□□□□□ -0.99
SMC4-223ENST00000493695 ADAMTS4O75173 837 aa8.84□□□□□ -0.99
SMC4-223ENST00000493695 TNFRSF21O75509 655 aa8.84□□□□□ -0.99
SMC4-223ENST00000493695 ABL1P00519 1130 aa8.84□□□□□ -0.99
SMC4-223ENST00000493695 SNX29Q8TEQ0 813 aa8.84□□□□□ -0.99
SMC4-223ENST00000493695 ANGEL1Q9UNK9 670 aaKnown RBP8.84□□□□□ -0.99
SMC4-223ENST00000493695 MTMR7Q9Y216 660 aa8.84□□□□□ -0.99
SMC4-223ENST00000493695 LEMD3Q9Y2U8 911 aa8.84□□□□□ -0.99
SMC4-223ENST00000493695 SPINK2P20155 84 aa8.83□□□□□ -1
SMC4-223ENST00000493695 DTX1Q86Y01 620 aa8.83□□□□□ -1
SMC4-223ENST00000493695 PIM2Q9P1W9 311 aa8.83□□□□□ -1
SMC4-223ENST00000493695 RNF114Q9Y508 228 aa8.83□□□□□ -1
SMC4-223ENST00000493695 FAM13AO94988 1023 aa8.82□□□□□ -1
SMC4-223ENST00000493695 DRD2P14416 443 aa8.82□□□□□ -1
SMC4-223ENST00000493695 HOXA10P31260 410 aaPredicted RBP8.82□□□□□ -1
SMC4-223ENST00000493695 EHHADHQ08426 723 aa8.82□□□□□ -1
SMC4-223ENST00000493695 VN1R5Q7Z5H4 357 aa8.82□□□□□ -1
SMC4-223ENST00000493695 ANO2Q9NQ90 1003 aa8.82□□□□□ -1
SMC4-223ENST00000493695 LATS2Q9NRM7 1088 aa8.82□□□□□ -1
SMC4-223ENST00000493695 LOC100289279A0A1B0GTE1 492 aa8.81□□□□□ -1
SMC4-223ENST00000493695 FAM95CA0A1B0GW59 222 aa8.81□□□□□ -1
SMC4-223ENST00000493695 MEGF11A6BM72 1044 aa8.81□□□□□ -1
SMC4-223ENST00000493695 BTBD11A6QL63 1104 aa8.81□□□□□ -1
SMC4-223ENST00000493695 USP5P45974 858 aa8.81□□□□□ -1
SMC4-223ENST00000493695 PAOXQ6QHF9 649 aa8.81□□□□□ -1
SMC4-223ENST00000493695 FBLIM1Q8WUP2 373 aa8.81□□□□□ -1
SMC4-223ENST00000493695 AMOTL2Q9Y2J4 779 aa8.81□□□□□ -1
SMC4-223ENST00000493695 POLR3DP05423 398 aaPredicted RBP8.8□□□□□ -1
SMC4-223ENST00000493695 EXOSC6Q5RKV6 272 aaKnown RBP8.8□□□□□ -1
SMC4-223ENST00000493695 METTL12A8MUP2 240 aa8.79□□□□□ -1
SMC4-223ENST00000493695 ESRRAP11474 423 aaPredicted RBP8.79□□□□□ -1
SMC4-223ENST00000493695 SSFA2P28290 1259 aa8.79□□□□□ -1
SMC4-223ENST00000493695 SMG8Q8ND04 991 aaKnown RBP8.79□□□□□ -1
SMC4-223ENST00000493695 TBC1D32Q96NH3 1257 aa8.79□□□□□ -1
SMC4-223ENST00000493695 YIPF2Q9BWQ6 316 aa8.79□□□□□ -1
SMC4-223ENST00000493695 TMPRSS13Q9BYE2 586 aa8.79□□□□□ -1
SMC4-223ENST00000493695 F13BP05160 661 aa8.78□□□□□ -1
SMC4-223ENST00000493695 DLGAP3O95886 979 aa8.77□□□□□ -1.01
SMC4-223ENST00000493695 ZNF211Q13398 564 aaPredicted RBP8.77□□□□□ -1.01
SMC4-223ENST00000493695 CDPF1Q6NVV7 123 aa8.77□□□□□ -1.01
SMC4-223ENST00000493695 CCDC82Q8N4S0 544 aa8.77□□□□□ -1.01
SMC4-223ENST00000493695 RAD18Q9NS91 495 aa8.77□□□□□ -1.01
SMC4-223ENST00000493695 RAB6AP20340 208 aa8.76□□□□□ -1.01
SMC4-223ENST00000493695 FKBP4Q02790 459 aaKnown RBP eCLIP8.76□□□□□ -1.01
SMC4-223ENST00000493695 KRTAP19-1Q8IUB9 90 aa8.76□□□□□ -1.01
SMC4-223ENST00000493695 TP53INP2Q8IXH6 220 aa8.76□□□□□ -1.01
SMC4-223ENST00000493695 BHLHE41Q9C0J9 482 aaPredicted RBP8.76□□□□□ -1.01
SMC4-223ENST00000493695 SOX17Q9H6I2 414 aaPredicted RBP8.76□□□□□ -1.01
SMC4-223ENST00000493695 SUGCTQ9HAC7 445 aa8.76□□□□□ -1.01
SMC4-223ENST00000493695 CCDC87Q9NVE4 849 aa8.76□□□□□ -1.01
SMC4-223ENST00000493695 CARNS1A5YM72 827 aa8.75□□□□□ -1.01
SMC4-223ENST00000493695 CYP26A1O43174 497 aa8.75□□□□□ -1.01
SMC4-223ENST00000493695 TIAF1O95411 115 aa8.75□□□□□ -1.01
SMC4-223ENST00000493695 SF3B2Q13435 895 aaKnown RBP8.75□□□□□ -1.01
SMC4-223ENST00000493695 PEAR1Q5VY43 1037 aaPredicted RBP8.75□□□□□ -1.01
SMC4-223ENST00000493695 METTL22Q9BUU2 404 aaPredicted RBP8.75□□□□□ -1.01
SMC4-223ENST00000493695 ZFYVE28Q9HCC9 887 aa8.75□□□□□ -1.01
SMC4-223ENST00000493695 TMEM88BA6NKF7 163 aa8.74□□□□□ -1.01
SMC4-223ENST00000493695 FZD6O60353 706 aa8.74□□□□□ -1.01
SMC4-223ENST00000493695 FOSL1P15407 271 aa8.74□□□□□ -1.01
SMC4-223ENST00000493695 YBX3P16989 372 aaKnown RBP eCLIP8.74□□□□□ -1.01
SMC4-223ENST00000493695 SOX4Q06945 474 aaPredicted RBP8.74□□□□□ -1.01
SMC4-223ENST00000493695 PCDH1Q08174 1060 aa8.74□□□□□ -1.01
SMC4-223ENST00000493695 AKAP4Q5JQC9 854 aa8.74□□□□□ -1.01
SMC4-223ENST00000493695 DYMQ7RTS9 669 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms