RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 CAPNS2Q96L46 248 aa18.83■□□□□ 0.6
USP39-217ENST00000491659 WNT10BO00744 389 aa18.82■□□□□ 0.6
USP39-217ENST00000491659 SASH1O94885 1247 aa18.82■□□□□ 0.6
USP39-217ENST00000491659 PUM3Q15397 648 aaKnown RBP18.82■□□□□ 0.6
USP39-217ENST00000491659 NBPF9Q3BBW0 867 aa18.82■□□□□ 0.6
USP39-217ENST00000491659 CYP4F22Q6NT55 531 aa18.82■□□□□ 0.6
USP39-217ENST00000491659 DLK2Q6UY11 383 aa18.82■□□□□ 0.6
USP39-217ENST00000491659 CERS5Q8N5B7 392 aa18.82■□□□□ 0.6
USP39-217ENST00000491659 TDRD7Q8NHU6 1098 aaKnown RBP18.82■□□□□ 0.6
USP39-217ENST00000491659 CLUAP1Q96AJ1 413 aa18.82■□□□□ 0.6
USP39-217ENST00000491659 CDCA5Q96FF9 252 aa18.82■□□□□ 0.6
USP39-217ENST00000491659 HHIPL1Q96JK4 782 aa18.82■□□□□ 0.6
USP39-217ENST00000491659 FAM84BQ96KN1 310 aaPredicted RBP18.82■□□□□ 0.6
USP39-217ENST00000491659 FBXO3Q9UK99 471 aa18.82■□□□□ 0.6
USP39-217ENST00000491659 JAG2Q9Y219 1238 aa18.82■□□□□ 0.6
USP39-217ENST00000491659 PAPPA2Q9BXP8 1791 aa18.81■□□□□ 0.6
USP39-217ENST00000491659 FAM205AQ6ZU69 1335 aa18.81■□□□□ 0.6
USP39-217ENST00000491659 F8W031 263 aaPredicted RBP18.81■□□□□ 0.6
USP39-217ENST00000491659 IFIT1P09914 478 aaKnown RBP18.81■□□□□ 0.6
USP39-217ENST00000491659 C2orf69Q8N8R5 385 aa18.81■□□□□ 0.6
USP39-217ENST00000491659 AIDAQ96BJ3 306 aa18.81■□□□□ 0.6
USP39-217ENST00000491659 SIL1Q9H173 461 aa18.81■□□□□ 0.6
USP39-217ENST00000491659 GBA2Q9HCG7 927 aaPredicted RBP18.81■□□□□ 0.6
USP39-217ENST00000491659 TNNQ9UQP3 1299 aa18.81■□□□□ 0.6
USP39-217ENST00000491659 CIAO1O76071 339 aa18.8■□□□□ 0.6
USP39-217ENST00000491659 SLC5A1P13866 664 aa18.8■□□□□ 0.6
USP39-217ENST00000491659 HUNKP57058 714 aa18.8■□□□□ 0.6
USP39-217ENST00000491659 DLGAP5Q15398 846 aa18.8■□□□□ 0.6
USP39-217ENST00000491659 MFSD14BQ5SR56 506 aa18.8■□□□□ 0.6
USP39-217ENST00000491659 FRAT2O75474 233 aaPredicted RBP18.79■□□□□ 0.6
USP39-217ENST00000491659 FBXO33Q7Z6M2 555 aa18.79■□□□□ 0.6
USP39-217ENST00000491659 APOBEC3FQ8IUX4 373 aaKnown RBP18.79■□□□□ 0.6
USP39-217ENST00000491659 FTSJ3Q8IY81 847 aaKnown RBP18.79■□□□□ 0.6
USP39-217ENST00000491659 COL1A1P02452 1464 aaPredicted RBP18.78■□□□□ 0.6
USP39-217ENST00000491659 ATG9AQ7Z3C6 839 aa18.78■□□□□ 0.6
USP39-217ENST00000491659 TMEM57Q8N5G2 664 aa18.78■□□□□ 0.6
USP39-217ENST00000491659 LPIN2Q92539 896 aa18.78■□□□□ 0.6
USP39-217ENST00000491659 ZBED3Q96IU2 234 aaPredicted RBP18.78■□□□□ 0.6
USP39-217ENST00000491659 IQSEC3Q9UPP2 1182 aaPredicted RBP18.78■□□□□ 0.6
USP39-217ENST00000491659 SRGAP3O43295 1099 aa18.77■□□□□ 0.6
USP39-217ENST00000491659 MYO1BO43795 1136 aa18.77■□□□□ 0.6
USP39-217ENST00000491659 GNAI2P04899 355 aa18.77■□□□□ 0.6
USP39-217ENST00000491659 FGFR2P21802 821 aa18.77■□□□□ 0.6
USP39-217ENST00000491659 IL15P40933 162 aaPredicted RBP18.77■□□□□ 0.6
USP39-217ENST00000491659 MAP2K1Q02750 393 aaPredicted RBP18.77■□□□□ 0.6
USP39-217ENST00000491659 CHAF1AQ13111 956 aaPredicted RBP18.77■□□□□ 0.6
USP39-217ENST00000491659 CFAP100Q494V2 611 aa18.77■□□□□ 0.6
USP39-217ENST00000491659 MTMR14Q8NCE2 650 aa18.77■□□□□ 0.6
USP39-217ENST00000491659 COPRSQ9NQ92 184 aa18.77■□□□□ 0.6
USP39-217ENST00000491659 CEP126Q9P2H0 1117 aa18.77■□□□□ 0.6
USP39-217ENST00000491659 PA2G4Q9UQ80 394 aaKnown RBP18.77■□□□□ 0.6
USP39-217ENST00000491659 RBM5P52756 815 aaKnown RBP eCLIP18.76■□□□□ 0.59
USP39-217ENST00000491659 MTX1Q13505 466 aa18.76■□□□□ 0.59
USP39-217ENST00000491659 ATP2B3Q16720 1220 aa18.76■□□□□ 0.59
USP39-217ENST00000491659 TBC1D22AQ8WUA7 517 aa18.76■□□□□ 0.59
USP39-217ENST00000491659 TTF2Q9UNY4 1162 aaKnown RBP18.76■□□□□ 0.59
USP39-217ENST00000491659 SCAF8Q9UPN6 1271 aaKnown RBP18.76■□□□□ 0.59
USP39-217ENST00000491659 PCNTO95613 3336 aa18.75■□□□□ 0.59
USP39-217ENST00000491659 NF2P35240 595 aa18.75■□□□□ 0.59
USP39-217ENST00000491659 MAP2K2P36507 400 aa18.75■□□□□ 0.59
USP39-217ENST00000491659 BCAMP50895 628 aa18.75■□□□□ 0.59
USP39-217ENST00000491659 FKBP1BP68106 108 aa18.75■□□□□ 0.59
USP39-217ENST00000491659 RGMBQ6NW40 437 aa18.75■□□□□ 0.59
USP39-217ENST00000491659 DZIP1LQ8IYY4 767 aaKnown RBP18.75■□□□□ 0.59
USP39-217ENST00000491659 WBP1LQ9NX94 342 aa18.75■□□□□ 0.59
USP39-217ENST00000491659 SPDYE2BA6NHP3 402 aa18.74■□□□□ 0.59
USP39-217ENST00000491659 FOXN1O15353 648 aa18.74■□□□□ 0.59
USP39-217ENST00000491659 AOC2O75106 756 aa18.74■□□□□ 0.59
USP39-217ENST00000491659 SPDYE6P0CI01 402 aa18.74■□□□□ 0.59
USP39-217ENST00000491659 BEGAINQ9BUH8 593 aa18.74■□□□□ 0.59
USP39-217ENST00000491659 CTCFP49711 727 aaPredicted RBP18.73■□□□□ 0.59
USP39-217ENST00000491659 NOGQ13253 232 aa18.73■□□□□ 0.59
USP39-217ENST00000491659 ITPRIPQ8IWB1 547 aa18.73■□□□□ 0.59
USP39-217ENST00000491659 SERPINA10Q9UK55 444 aa18.73■□□□□ 0.59
USP39-217ENST00000491659 PCDHAC2Q9Y5I4 1007 aa18.73■□□□□ 0.59
USP39-217ENST00000491659 CLRN2A0PK11 232 aa18.72■□□□□ 0.59
USP39-217ENST00000491659 ZNF157P51786 506 aaPredicted RBP18.72■□□□□ 0.59
USP39-217ENST00000491659 TTLL12Q14166 644 aaPredicted RBP18.72■□□□□ 0.59
USP39-217ENST00000491659 PRAMEF18Q5VWM3 479 aa18.72■□□□□ 0.59
USP39-217ENST00000491659 CCDC102AQ96A19 550 aa18.72■□□□□ 0.59
USP39-217ENST00000491659 VEZTQ9HBM0 779 aa18.72■□□□□ 0.59
USP39-217ENST00000491659 GNL3LQ9NVN8 582 aaKnown RBP18.72■□□□□ 0.59
USP39-217ENST00000491659 PRMT6Q96LA8 375 aaPredicted RBP18.71■□□□□ 0.59
USP39-217ENST00000491659 PPP2R3BQ9Y5P8 575 aa18.71■□□□□ 0.59
USP39-217ENST00000491659 MAST3O60307 1309 aa18.71■□□□□ 0.59
USP39-217ENST00000491659 CRKP46108 304 aa18.7■□□□□ 0.58
USP39-217ENST00000491659 COL13A1Q5TAT6 717 aaPredicted RBP18.7■□□□□ 0.58
USP39-217ENST00000491659 WDR66Q8TBY9 1149 aa18.7■□□□□ 0.58
USP39-217ENST00000491659 DEFB129Q9H1M3 183 aa18.7■□□□□ 0.58
USP39-217ENST00000491659 AKAP2Q9Y2D5 859 aa18.7■□□□□ 0.58
USP39-217ENST00000491659 SUGT1Q9Y2Z0 365 aa18.7■□□□□ 0.58
USP39-217ENST00000491659 MS4A1P11836 297 aa18.69■□□□□ 0.58
USP39-217ENST00000491659 RLBP1P12271 317 aa18.69■□□□□ 0.58
USP39-217ENST00000491659 HDLBPQ00341 1268 aaKnown RBP18.69■□□□□ 0.58
USP39-217ENST00000491659 TNFAIP1Q13829 316 aa18.69■□□□□ 0.58
USP39-217ENST00000491659 TEKT1Q969V4 418 aa18.69■□□□□ 0.58
USP39-217ENST00000491659 PNMA6EA0A0J9YXQ4 647 aa18.68■□□□□ 0.58
USP39-217ENST00000491659 SLC10A3P09131 477 aa18.68■□□□□ 0.58
USP39-217ENST00000491659 TFCP2Q12800 502 aa18.68■□□□□ 0.58
USP39-217ENST00000491659 GRIK5Q16478 980 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms