RNA–Protein interactions for RNA: ENST00000465457.1

HDAC6-215, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-215ENST00000465457 SPRYD7Q5W111 196 aa17.28■□□□□ 0.36
HDAC6-215ENST00000465457 JARID2Q92833 1246 aaPredicted RBP17.28■□□□□ 0.36
HDAC6-215ENST00000465457 RWDD1Q9H446 243 aaPredicted RBP17.28■□□□□ 0.36
HDAC6-215ENST00000465457 USP17L3A6NCW0 530 aa17.27■□□□□ 0.36
HDAC6-215ENST00000465457 USP17L4A6NCW7 530 aa17.27■□□□□ 0.36
HDAC6-215ENST00000465457 ELL2O00472 640 aaPredicted RBP17.27■□□□□ 0.36
HDAC6-215ENST00000465457 ANKRD13DQ6ZTN6 518 aa17.27■□□□□ 0.36
HDAC6-215ENST00000465457 USP17L1Q7RTZ2 530 aa17.27■□□□□ 0.36
HDAC6-215ENST00000465457 CD99L2Q8TCZ2 262 aa17.27■□□□□ 0.36
HDAC6-215ENST00000465457 STK31Q9BXU1 1019 aa17.27■□□□□ 0.36
HDAC6-215ENST00000465457 DACT2Q5SW24 774 aa17.26■□□□□ 0.35
HDAC6-215ENST00000465457 CCDC30Q5VVM6 783 aa17.26■□□□□ 0.35
HDAC6-215ENST00000465457 IFNL1Q8IU54 200 aa17.26■□□□□ 0.35
HDAC6-215ENST00000465457 TMEM57Q8N5G2 664 aa17.26■□□□□ 0.35
HDAC6-215ENST00000465457 CLMNQ96JQ2 1002 aa17.26■□□□□ 0.35
HDAC6-215ENST00000465457 ANGEL1Q9UNK9 670 aaKnown RBP17.26■□□□□ 0.35
HDAC6-215ENST00000465457 LDLRAD1Q5T700 205 aa17.25■□□□□ 0.35
HDAC6-215ENST00000465457 FBXW7Q969H0 707 aa17.25■□□□□ 0.35
HDAC6-215ENST00000465457 TNNQ9UQP3 1299 aa17.25■□□□□ 0.35
HDAC6-215ENST00000465457 PTPN22Q9Y2R2 807 aa17.25■□□□□ 0.35
HDAC6-215ENST00000465457 XDHP47989 1333 aa17.24■□□□□ 0.35
HDAC6-215ENST00000465457 HDGFL1Q5TGJ6 251 aa17.24■□□□□ 0.35
HDAC6-215ENST00000465457 INTS3Q68E01 1043 aaKnown RBP17.24■□□□□ 0.35
HDAC6-215ENST00000465457 ARMC5Q96C12 935 aa17.24■□□□□ 0.35
HDAC6-215ENST00000465457 NF2P35240 595 aa17.23■□□□□ 0.35
HDAC6-215ENST00000465457 HDAC1Q13547 482 aaPredicted RBP17.23■□□□□ 0.35
HDAC6-215ENST00000465457 ZBTB40Q9NUA8 1239 aa17.23■□□□□ 0.35
HDAC6-215ENST00000465457 COL6A3P12111 3177 aa17.23■□□□□ 0.35
HDAC6-215ENST00000465457 CACNA1FO60840 1977 aa17.22■□□□□ 0.35
HDAC6-215ENST00000465457 KLRK1P26718 216 aa17.22■□□□□ 0.35
HDAC6-215ENST00000465457 GJA5P36382 358 aa17.22■□□□□ 0.35
HDAC6-215ENST00000465457 CRHR2Q13324 411 aa17.22■□□□□ 0.35
HDAC6-215ENST00000465457 ARMC9Q7Z3E5 817 aa17.22■□□□□ 0.35
HDAC6-215ENST00000465457 PODNQ7Z5L7 613 aa17.22■□□□□ 0.35
HDAC6-215ENST00000465457 TXNRD3Q86VQ6 643 aa17.22■□□□□ 0.35
HDAC6-215ENST00000465457 ZBTB38Q8NAP3 1195 aaPredicted RBP17.22■□□□□ 0.35
HDAC6-215ENST00000465457 WNK4Q96J92 1243 aa17.22■□□□□ 0.35
HDAC6-215ENST00000465457 MED23Q9ULK4 1368 aa17.22■□□□□ 0.35
HDAC6-215ENST00000465457 A0A1B0GUL6 1792 aa17.22■□□□□ 0.35
HDAC6-215ENST00000465457 PCDHAC2Q9Y5I4 1007 aa17.21■□□□□ 0.35
HDAC6-215ENST00000465457 MANSC4A6NHS7 340 aaPredicted RBP17.2■□□□□ 0.34
HDAC6-215ENST00000465457 H0YGN5 161 aa17.2■□□□□ 0.34
HDAC6-215ENST00000465457 ALDH1A1P00352 501 aa17.2■□□□□ 0.34
HDAC6-215ENST00000465457 MYCP01106 439 aaPredicted RBP17.2■□□□□ 0.34
HDAC6-215ENST00000465457 ATP2B4P23634 1241 aa17.2■□□□□ 0.34
HDAC6-215ENST00000465457 TRIM28Q13263 835 aaKnown RBP17.2■□□□□ 0.34
HDAC6-215ENST00000465457 KIAA0825Q8IV33 1275 aa17.2■□□□□ 0.34
HDAC6-215ENST00000465457 PCDHB15Q9Y5E8 787 aa17.2■□□□□ 0.34
HDAC6-215ENST00000465457 AOX1Q06278 1338 aa17.2■□□□□ 0.34
HDAC6-215ENST00000465457 SLC4A2P04920 1241 aa17.19■□□□□ 0.34
HDAC6-215ENST00000465457 CCDC152Q4G0S7 254 aa17.19■□□□□ 0.34
HDAC6-215ENST00000465457 APOBEC3FQ8IUX4 373 aaKnown RBP17.19■□□□□ 0.34
HDAC6-215ENST00000465457 ANKRD18AQ8IVF6 992 aa17.19■□□□□ 0.34
HDAC6-215ENST00000465457 OGFOD1Q8N543 542 aa17.19■□□□□ 0.34
HDAC6-215ENST00000465457 OTUD5Q96G74 571 aa17.19■□□□□ 0.34
HDAC6-215ENST00000465457 ERO1AQ96HE7 468 aa17.19■□□□□ 0.34
HDAC6-215ENST00000465457 ZBED3Q96IU2 234 aaPredicted RBP17.19■□□□□ 0.34
HDAC6-215ENST00000465457 ZNF333Q96JL9 665 aa17.19■□□□□ 0.34
HDAC6-215ENST00000465457 MYD88Q99836 296 aa17.19■□□□□ 0.34
HDAC6-215ENST00000465457 DBF4Q9UBU7 674 aaPredicted RBP17.19■□□□□ 0.34
HDAC6-215ENST00000465457 LAMA3Q16787 3333 aa17.18■□□□□ 0.34
HDAC6-215ENST00000465457 IGHDP01880 384 aa17.18■□□□□ 0.34
HDAC6-215ENST00000465457 CCT4P50991 539 aaKnown RBP17.18■□□□□ 0.34
HDAC6-215ENST00000465457 PTPN18Q99952 460 aa17.18■□□□□ 0.34
HDAC6-215ENST00000465457 PHAXQ9H814 394 aaKnown RBP17.18■□□□□ 0.34
HDAC6-215ENST00000465457 EFCC1Q9HA90 598 aa17.18■□□□□ 0.34
HDAC6-215ENST00000465457 RBM19Q9Y4C8 960 aaKnown RBP17.18■□□□□ 0.34
HDAC6-215ENST00000465457 CUL9Q8IWT3 2517 aa17.18■□□□□ 0.34
HDAC6-215ENST00000465457 COL1A1P02452 1464 aaPredicted RBP17.18■□□□□ 0.34
HDAC6-215ENST00000465457 ZBTB7BO15156 539 aaPredicted RBP17.17■□□□□ 0.34
HDAC6-215ENST00000465457 PDE8AO60658 829 aa17.17■□□□□ 0.34
HDAC6-215ENST00000465457 ZBTB48P10074 688 aaPredicted RBP17.17■□□□□ 0.34
HDAC6-215ENST00000465457 SLC10A4Q96EP9 437 aa17.17■□□□□ 0.34
HDAC6-215ENST00000465457 PTCH2Q9Y6C5 1203 aa17.17■□□□□ 0.34
HDAC6-215ENST00000465457 PCCAP05165 728 aaPredicted RBP17.16■□□□□ 0.34
HDAC6-215ENST00000465457 MAP3K11Q16584 847 aa17.16■□□□□ 0.34
HDAC6-215ENST00000465457 STRIP1Q5VSL9 837 aa17.16■□□□□ 0.34
HDAC6-215ENST00000465457 CHRDL2Q6WN34 429 aa17.16■□□□□ 0.34
HDAC6-215ENST00000465457 RIC3Q7Z5B4 369 aa17.16■□□□□ 0.34
HDAC6-215ENST00000465457 DEFB129Q9H1M3 183 aa17.16■□□□□ 0.34
HDAC6-215ENST00000465457 MINPP1Q9UNW1 487 aa17.16■□□□□ 0.34
HDAC6-215ENST00000465457 A0A0C4DFX4 3053 aa17.16■□□□□ 0.34
HDAC6-215ENST00000465457 MYO3BQ8WXR4 1341 aa17.16■□□□□ 0.34
HDAC6-215ENST00000465457 GREM2Q9H772 168 aa17.15■□□□□ 0.34
HDAC6-215ENST00000465457 HYPKQ9NX55 129 aa17.15■□□□□ 0.34
HDAC6-215ENST00000465457 SP3Q02447 781 aa17.14■□□□□ 0.33
HDAC6-215ENST00000465457 FLIIQ13045 1269 aa17.14■□□□□ 0.33
HDAC6-215ENST00000465457 CERS5Q8N5B7 392 aa17.14■□□□□ 0.33
HDAC6-215ENST00000465457 CLRN2A0PK11 232 aa17.13■□□□□ 0.33
HDAC6-215ENST00000465457 CTSWP56202 376 aa17.13■□□□□ 0.33
HDAC6-215ENST00000465457 INHBEP58166 350 aa17.13■□□□□ 0.33
HDAC6-215ENST00000465457 GTF2IP78347 998 aa17.13■□□□□ 0.33
HDAC6-215ENST00000465457 SMC5Q8IY18 1101 aa17.13■□□□□ 0.33
HDAC6-215ENST00000465457 CNKSR2Q8WXI2 1034 aa17.13■□□□□ 0.33
HDAC6-215ENST00000465457 TMEM106CQ9BVX2 250 aa17.13■□□□□ 0.33
HDAC6-215ENST00000465457 COA1Q9GZY4 146 aa17.13■□□□□ 0.33
HDAC6-215ENST00000465457 RBM27Q9P2N5 1060 aaKnown RBP17.13■□□□□ 0.33
HDAC6-215ENST00000465457 DLL1O00548 723 aa17.12■□□□□ 0.33
HDAC6-215ENST00000465457 SLC9C1Q4G0N8 1177 aa17.12■□□□□ 0.33
HDAC6-215ENST00000465457 NBPF12Q5TAG4 269 aaPredicted RBP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms