RNA–Protein interactions for RNA: ENST00000465457.1

HDAC6-215, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-215ENST00000465457 NISCHQ9Y2I1 1504 aa34.26■■■■□ 3.08
HDAC6-215ENST00000465457 ABCC9O60706 1549 aa31.67■■■□□ 2.66
HDAC6-215ENST00000465457 CCDC180Q9P1Z9 1646 aa31.05■■■□□ 2.56
HDAC6-215ENST00000465457 DNAJC5BQ9UF47 199 aa30.25■■■□□ 2.43
HDAC6-215ENST00000465457 RB1CC1Q8TDY2 1594 aa29.79■■■□□ 2.36
HDAC6-215ENST00000465457 NACADO15069 1562 aa29.41■■■□□ 2.3
HDAC6-215ENST00000465457 UNC13AQ9UPW8 1703 aa29.37■■■□□ 2.29
HDAC6-215ENST00000465457 PABPN1Q86U42 306 aaKnown RBP eCLIP29.34■■■□□ 2.293e-7■■□□□ 13.5
HDAC6-215ENST00000465457 BICRAQ9NZM4 1560 aa29.09■■■□□ 2.25
HDAC6-215ENST00000465457 DCAF8L2P0C7V8 631 aa29.08■■■□□ 2.25
HDAC6-215ENST00000465457 MYO15BQ96JP2 1530 aa28.75■■■□□ 2.19
HDAC6-215ENST00000465457 CC2D2AQ9P2K1 1620 aa28.6■■■□□ 2.17
HDAC6-215ENST00000465457 CECR2Q9BXF3 1484 aa28.53■■■□□ 2.16
HDAC6-215ENST00000465457 SHROOM4Q9ULL8 1493 aa28.41■■■□□ 2.14
HDAC6-215ENST00000465457 EIF4G1Q04637 1599 aaKnown RBP28.37■■■□□ 2.13
HDAC6-215ENST00000465457 SCRIBQ14160 1630 aa28.34■■■□□ 2.13
HDAC6-215ENST00000465457 ZCCHC6Q5VYS8 1495 aaKnown RBP28.3■■■□□ 2.12
HDAC6-215ENST00000465457 DCAF1Q9Y4B6 1507 aa28.19■■■□□ 2.1
HDAC6-215ENST00000465457 DNAJC5Q9H3Z4 198 aa28.08■■■□□ 2.09
HDAC6-215ENST00000465457 CUX2O14529 1486 aa27.44■■□□□ 1.98
HDAC6-215ENST00000465457 ERCC6Q03468 1493 aa27.3■■□□□ 1.96
HDAC6-215ENST00000465457 NCAPD3P42695 1498 aa27.14■■□□□ 1.94
HDAC6-215ENST00000465457 NESP48681 1621 aa27.08■■□□□ 1.93
HDAC6-215ENST00000465457 ATAD2BQ9ULI0 1458 aa27.04■■□□□ 1.92
HDAC6-215ENST00000465457 THOC2Q8NI27 1593 aaKnown RBP26.96■■□□□ 1.91
HDAC6-215ENST00000465457 HMGXB3Q12766 1538 aa26.95■■□□□ 1.9
HDAC6-215ENST00000465457 SMARCA4P51532 1647 aa26.92■■□□□ 1.9
HDAC6-215ENST00000465457 SMARCA2P51531 1590 aa26.88■■□□□ 1.89
HDAC6-215ENST00000465457 KIF21AQ7Z4S6 1674 aa26.77■■□□□ 1.88
HDAC6-215ENST00000465457 BAZ1BQ9UIG0 1483 aaKnown RBP26.73■■□□□ 1.87
HDAC6-215ENST00000465457 LAMC3Q9Y6N6 1575 aa26.67■■□□□ 1.86
HDAC6-215ENST00000465457 TRIM41Q8WV44 630 aa26.67■■□□□ 1.86
HDAC6-215ENST00000465457 PEG3Q9GZU2 1588 aa26.61■■□□□ 1.85
HDAC6-215ENST00000465457 BAZ1AQ9NRL2 1556 aaPredicted RBP26.61■■□□□ 1.85
HDAC6-215ENST00000465457 MROH2BQ7Z745 1585 aa26.46■■□□□ 1.83
HDAC6-215ENST00000465457 PDS5BQ9NTI5 1447 aa26.45■■□□□ 1.82
HDAC6-215ENST00000465457 MRC2Q9UBG0 1479 aa26.36■■□□□ 1.81
HDAC6-215ENST00000465457 WDR62O43379 1518 aa26.36■■□□□ 1.81
HDAC6-215ENST00000465457 CADPSQ9ULU8 1353 aa26.27■■□□□ 1.8
HDAC6-215ENST00000465457 WIZO95785 1651 aa26.17■■□□□ 1.78
HDAC6-215ENST00000465457 CEP164Q9UPV0 1460 aa26.12■■□□□ 1.77
HDAC6-215ENST00000465457 FANCD2Q9BXW9 1451 aa26.05■■□□□ 1.76
HDAC6-215ENST00000465457 OSCARQ8IYS5 282 aa25.98■■□□□ 1.75
HDAC6-215ENST00000465457 RIMBP3CA6NJZ7 1639 aa25.96■■□□□ 1.75
HDAC6-215ENST00000465457 RIMBP3BA6NNM3 1639 aa25.96■■□□□ 1.75
HDAC6-215ENST00000465457 RIMBP3Q9UFD9 1639 aa25.96■■□□□ 1.75
HDAC6-215ENST00000465457 URB2Q14146 1524 aaKnown RBP25.94■■□□□ 1.74
HDAC6-215ENST00000465457 CFTRP13569 1480 aa25.89■■□□□ 1.73
HDAC6-215ENST00000465457 ARHGEF11O15085 1522 aa25.77■■□□□ 1.72
HDAC6-215ENST00000465457 PRDM2Q13029 1718 aa25.74■■□□□ 1.71
HDAC6-215ENST00000465457 ZNF608Q9ULD9 1512 aaPredicted RBP25.74■■□□□ 1.71
HDAC6-215ENST00000465457 TOP2AP11388 1531 aaKnown RBP25.7■■□□□ 1.7
HDAC6-215ENST00000465457 RSF1Q96T23 1441 aaPredicted RBP25.62■■□□□ 1.69
HDAC6-215ENST00000465457 EIF4G3O43432 1585 aaKnown RBP25.6■■□□□ 1.69
HDAC6-215ENST00000465457 IFT140Q96RY7 1462 aa25.58■■□□□ 1.69
HDAC6-215ENST00000465457 CHD1O14646 1710 aa25.57■■□□□ 1.68
HDAC6-215ENST00000465457 TOPBP1Q92547 1522 aa25.52■■□□□ 1.68
HDAC6-215ENST00000465457 ARAP1Q96P48 1450 aa25.49■■□□□ 1.67
HDAC6-215ENST00000465457 CYB5RLQ6IPT4 315 aa25.49■■□□□ 1.67
HDAC6-215ENST00000465457 CCDC88BA6NC98 1476 aa25.4■■□□□ 1.66
HDAC6-215ENST00000465457 TARBP1Q13395 1621 aaKnown RBP25.39■■□□□ 1.66
HDAC6-215ENST00000465457 TRHP20396 242 aaPredicted RBP25.38■■□□□ 1.65
HDAC6-215ENST00000465457 DNMBPQ6XZF7 1577 aa25.37■■□□□ 1.65
HDAC6-215ENST00000465457 AQRO60306 1485 aaKnown RBP eCLIP25.36■■□□□ 1.651e-9■■■■□ 22.4
HDAC6-215ENST00000465457 ABCC8Q09428 1581 aa25.25■■□□□ 1.63
HDAC6-215ENST00000465457 FBLN2P98095 1184 aa25.23■■□□□ 1.63
HDAC6-215ENST00000465457 POLA1P09884 1462 aaPredicted RBP25.22■■□□□ 1.63
HDAC6-215ENST00000465457 CLASP1Q7Z460 1538 aa25.17■■□□□ 1.62
HDAC6-215ENST00000465457 RAD54L2Q9Y4B4 1467 aa25.17■■□□□ 1.62
HDAC6-215ENST00000465457 SNAPC4Q5SXM2 1469 aa25.11■■□□□ 1.61
HDAC6-215ENST00000465457 TDRD9Q8NDG6 1382 aaKnown RBP25.09■■□□□ 1.61
HDAC6-215ENST00000465457 AEBP2Q6ZN18 517 aaPredicted RBP25.03■■□□□ 1.6
HDAC6-215ENST00000465457 SYNJ1O43426 1573 aa25.02■■□□□ 1.6
HDAC6-215ENST00000465457 SOGA1O94964 1423 aa25■■□□□ 1.59
HDAC6-215ENST00000465457 FGD5Q6ZNL6 1462 aa24.98■■□□□ 1.59
HDAC6-215ENST00000465457 WDR97A6NE52 1622 aa24.95■■□□□ 1.58
HDAC6-215ENST00000465457 MAGI1Q96QZ7 1491 aaPredicted RBP24.94■■□□□ 1.58
HDAC6-215ENST00000465457 PBRM1Q86U86 1689 aa24.91■■□□□ 1.58
HDAC6-215ENST00000465457 CUX1P39880 1505 aa24.91■■□□□ 1.58
HDAC6-215ENST00000465457 CHMP7Q8WUX9 453 aaPredicted RBP24.88■■□□□ 1.57
HDAC6-215ENST00000465457 SYNJ2O15056 1496 aa24.88■■□□□ 1.57
HDAC6-215ENST00000465457 GAPVD1Q14C86 1478 aa24.88■■□□□ 1.57
HDAC6-215ENST00000465457 GRIN2BQ13224 1484 aa24.87■■□□□ 1.57
HDAC6-215ENST00000465457 ERCC6L2Q5T890 1561 aa24.83■■□□□ 1.57
HDAC6-215ENST00000465457 ABCA5Q8WWZ7 1642 aa24.73■■□□□ 1.55
HDAC6-215ENST00000465457 KIF13AQ9H1H9 1805 aa24.68■■□□□ 1.54
HDAC6-215ENST00000465457 CEP170Q5SW79 1584 aa24.64■■□□□ 1.54
HDAC6-215ENST00000465457 ABCA10Q8WWZ4 1543 aa24.61■■□□□ 1.53
HDAC6-215ENST00000465457 GRIN2AQ12879 1464 aa24.61■■□□□ 1.53
HDAC6-215ENST00000465457 ADAMTS12P58397 1594 aa24.59■■□□□ 1.53
HDAC6-215ENST00000465457 SHROOM2Q13796 1616 aa24.57■■□□□ 1.52
HDAC6-215ENST00000465457 NUP160Q12769 1436 aa24.53■■□□□ 1.52
HDAC6-215ENST00000465457 FHAD1B1AJZ9 1412 aa24.35■■□□□ 1.49
HDAC6-215ENST00000465457 BIVM-ERCC5R4GMW8 1640 aa24.34■■□□□ 1.49
HDAC6-215ENST00000465457 PRG4Q92954 1404 aaPredicted RBP24.33■■□□□ 1.49
HDAC6-215ENST00000465457 WRNQ14191 1432 aaPredicted RBP eCLIP24.32■■□□□ 1.48
HDAC6-215ENST00000465457 DIP2BQ9P265 1576 aa24.31■■□□□ 1.48
HDAC6-215ENST00000465457 TOP2BQ02880 1626 aa24.3■■□□□ 1.48
HDAC6-215ENST00000465457 ABCC10Q5T3U5 1492 aa24.28■■□□□ 1.48
HDAC6-215ENST00000465457 RUSC2Q8N2Y8 1516 aa24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms